CSPI07G21630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G21630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Location	Chr7: 18428629 .. 18430397 (-)
RNA-Seq Expression	CSPI07G21630
Synteny	CSPI07G21630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGCTTTGTGAAACCTTACCCATAACGATCGACGGCGACACCAGATAAGGCCACAAAGAACCACACAAACACAGCCATTATGATTTATCTTTCACCAAAACACTTCATTTCTTCGACCCTCAATTCCCCAAAATGGAGGCTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTTAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTTAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTTGATTTGGCTTTTGTTAATGTAAGTTGTAAACTTGGTAATGTCAAATGTGAGGGGTTTGTTTTGGCTTATCGAGTATGGTTTTGTGTGTGTGTGTTTTTTTTTCAGTCTGTGCTGCTTCCTGATGGAACTCCAGATGTGCACTTACGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATGTGAGTTTCCCCGTTCATTAACTTGTTGAGGAACCTGGGAATTTCAATTAGTTTTGATTATCGTATGGCTTTGATGTTGTTTTTCAGTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGGTGATTTTTCTGTATTAGTTCACGTTCTCAACAGGATTTAATCACTGCCCTTTTCATTTCTACTATCTGAATCATTGTTTATTTGATCATCATGGTAAATTTATTCAGTTCATGACTTAGACAAACTGACTTAGAAGTTAAAAGAGTTCAAAAGTCGGTGCTATGGCCATTGGAAAATGAAAGAAATGAAGAAGAAATTCAATCCTAATGTTCTGCTACAAGTCTTCTGACTGAAAATTTTACCGTTTCAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGAACAGACATAGAGAAAGACAAACTCAAAAGGGTAAGAACACCGATGCCATTGGCATTATAAGCTGAGAAACCAAAACGAGTCAATAACTATGGACACTGTCATGTAGATGTTAAGTTCATTTGAATTTTTCATTCAAATCCTTTTAACATCATGTTGTGGTTGAATCAAACGAGAGCACGAGGCGATACAATGATAGAAGTATAATGATTTTGTTTTCATGCACAGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGGTAAATAGTTGAAGCTTGATTGATGATGTTCTTGAGTAGAATAGTCTCACAGTCATCTCTTTTTCACAAAAGTTGATGAGTCTTAATTGTTTGTTTTCTTTGGATGCAGCTCGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATCAATGGGGCTATGAAGAAGTAGAGCTTTCAGACTCATCTGAGTCTACATAAAATTTAACTCATTTACTCTTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGATACTACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCTCAGTATCATCAATGTAATTATTCCTTGTCTATATTCAACAGTTCATTCTTTTTTTGGGCAATAAATTGTTAAGTGGTGCATTCCTTCTTGTTATTATATCGTTCATATGTTTGAGTATGAGTACGATAATACTTACGAAAGCATAACTTAACAAGTTAAAACATTATATAAGATCATCAGTTCATATCACTACCCCTTATATTGTT

mRNA sequence

TTCAGCTTTGTGAAACCTTACCCATAACGATCGACGGCGACACCAGATAAGGCCACAAAGAACCACACAAACACAGCCATTATGATTTATCTTTCACCAAAACACTTCATTTCTTCGACCCTCAATTCCCCAAAATGGAGGCTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTTAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTTAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTTGATTTGGCTTTTGTTAATTCTGTGCTGCTTCCTGATGGAACTCCAGATGTGCACTTACGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGAACAGACATAGAGAAAGACAAACTCAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTCGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATCAATGGGGCTATGAAGAAGTAGAGCTTTCAGACTCATCTGAGTCTACATAAAATTTAACTCATTTACTCTTTTTTGACCTATCGGAGTCAGCTGTGAAGATTGAGCTATGGATACTACTCATCCACTTTGGAGCCTACAAAGACAAGCTCCCTGCCTCAGTATCATCAATGTAATTATTCCTTGTCTATATTCAACAGTTCATTCTTTTTTTGGGCAATAAATTGTTAAGTGGTGCATTCCTTCTTGTTATTATATCGTTCATATGTTTGAGTATGAGTACGATAATACTTACGAAAGCATAACTTAACAAGTTAAAACATTATATAAGATCATCAGTTCATATCACTACCCCTTATATTGTT

Coding sequence (CDS)

ATGGAGGCTCTCCATCTGGGTTCATACCATTTATCATCTTCATCCTCCTTTCGTTCCTTTAACTACATTACGAATTCCTCCCACACCCTTAAACGCTTTCGCCCTCTTACTTTCCGTAGAACCCAAGTTAGAGCTGTTGGCACTGTTCCCCAGAGTCAATCTGAAGCCACTGACCCTGAGGAGCCTCCGATTGTTGATTTGGCTTTTGTTAATTCTGTGCTGCTTCCTGATGGAACTCCAGATGTGCACTTACGTCGAGCATGTGGTGGGCAAAAGCTTAGAAACATAATGTTGGATTCTAATATTGACTTGTATGGACCTTATTCGAGATTTCTGTTGAACTGTGCTGGTGGAGGAACCTGTGGGACTTGTATGGTGGAGATTGTTGAAGGGAAAGAGCTACTGAATCCTCGAACAGACATAGAGAAAGACAAACTCAAAAGGAAACCTAAAAACTGGAGACTAGCTTGTCAAACCACTGTGGGGAAACCAGATTCCAGAGGGATGCTCGTTGTTCAACAGTTGCCTGAGTGGAAAGCTCATCAATGGGGCTATGAAGAAGTAGAGCTTTCAGACTCATCTGAGTCTACATAA

Protein sequence

MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPEEPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKAHQWGYEEVELSDSSEST*

Homology

[Close]

BLAST of CSPI07G21630 vs. ExPASy Swiss-Prot
Match: Q9LU21 (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-62
Identity = 123/188 (65.43%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRTQVRAVGTVPQSQSEA 65
           +GS  LS S    S     + SH  K  +P ++         R   VRA+ T P SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPDGTPDVH RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 184
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

[Close]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL
Match: A0A0A0KC78 (2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.2e-108
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEALHLGSYHL SSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSEST 198
           H+WGYEEVELSDSSEST
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL
Match: A0A5A7UW39 (Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002050 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.0e-104
Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTVPQSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSES 197
           H+WGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL
Match: A0A1S3CGA8 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.4e-104
Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSES 197
           H+WGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL
Match: A0A6J1CVZ7 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014722 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.7e-101
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEA HLGSY LSSSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSEST 198
           H+WGYE+VELS+SSES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL
Match: A0A6J1KDJ1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494655 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.3e-95
Identity = 168/197 (85.28%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTFRR+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSEST 198
           H+WGYE+VELS+SSES+
Sbjct: 181 HEWGYEKVELSESSESS 191

[Close]

BLAST of CSPI07G21630 vs. NCBI nr
Match: XP_004141758.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_016364 [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 4.6e-108
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEALHLGSYHL SSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSEST 198
           H+WGYEEVELSDSSEST
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of CSPI07G21630 vs. NCBI nr
Match: KAA0059320.1 (photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK04007.1 photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa])

HSP 1 Score: 388.3 bits (996), Expect = 4.1e-104
Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTVPQSQSEA DPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVPQSQSEAIDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSES 197
           H+WGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of CSPI07G21630 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 6.9e-104
Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           ME LHLGSYHLSSSSSFRSFNYITNSSHTLKRFR LTFRRTQVRAVGTV QSQSEATDPE
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVDLAFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSES 197
           H+WGYEEV+LS+ SES
Sbjct: 181 HEWGYEEVDLSELSES 196

[Close]

BLAST of CSPI07G21630 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEA HLGSY LSSSSS RSFNYITNS+HTLKR RPL FRR ++RAVGTVPQSQSE TDPE
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPPIVD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSEST 198
           H+WGYE+VELS+SSES+
Sbjct: 181 HEWGYEKVELSESSESS 197

[Close]

BLAST of CSPI07G21630 vs. NCBI nr
Match: XP_038899995.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 1.8e-99
Identity = 177/196 (90.31%), Postives = 188/196 (95.92%), Query Frame = 0


Query: 1   MEALHLGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60
           MEALHLGSY LSSSSSFRSFNYIT+SS TLKRFRPL+FRR  +RAVGTVPQ+QSE TDPE
Sbjct: 1   MEALHLGSYRLSSSSSFRSFNYITSSSQTLKRFRPLSFRRAHIRAVGTVPQNQSETTDPE 60

Query: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSNI+LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPVVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180
           CGTCMVEI+EGKELLN RTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA
Sbjct: 121 CGTCMVEIIEGKELLNSRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HQWGYEEVELSDSSES 197
           H+WGYE+VE+S+SSES
Sbjct: 181 HEWGYEKVEISESSES 196

[Close]

BLAST of CSPI07G21630 vs. TAIR 10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-63
Identity = 123/188 (65.43%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 6   LGSYHLSSSSSFRSFNYITNSSHTLKRFRPLTF---------RRTQVRAVGTVPQSQSEA 65
           +GS  LS S    S     + SH  K  +P ++         R   VRA+ T P SQ  A
Sbjct: 1   MGSVQLSGSGLVASLPPNHSFSHKTKLNKPNSYFFRSKHNAARTKTVRAISTAPASQPPA 60

Query: 66  TD-PEEPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNC 125
            D P+EPP VD AFV+SVLLPDGTPDVH RRA GGQKLR+IMLDSNI+LYGPYS+ L NC
Sbjct: 61  ADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNC 120

Query: 126 AGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQL 184
           AG GTC TCMVEIV GKELLNPRTDIEK+KLKRKPKNWRLACQT VG PDS G++V+QQL
Sbjct: 121 AGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQL 180

[Close]

BLAST of CSPI07G21630 vs. TAIR 10
Match: AT4G32590.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-29
Identity = 64/146 (43.84%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRGMLVVQQLPEWK 180
           RLACQT VG  ++ G +VVQ++P+WK
Sbjct: 148 RLACQTIVGNKENSGKVVVQRIPQWK 172

[Close]

BLAST of CSPI07G21630 vs. TAIR 10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 58/135 (42.96%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNW 159
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+KP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 160 RLACQTTVGKPDSRG 169
           RLACQT VG  ++ G
Sbjct: 148 RLACQTIVGNKENSG 161

[Close]

BLAST of CSPI07G21630 vs. TAIR 10
Match: AT4G32590.4 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-16
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKR 149
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LK+
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKK 141

[Close]

BLAST of CSPI07G21630 vs. TAIR 10
Match: AT4G32590.2 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 40  RTQVRAVGTVPQSQSEATDPE-----EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQK-L 99
           R +V +  +   S S+A+ P+      P  ++L F       DG+  V   +A  G K L
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 100 RNIMLDSNIDLYGPYSRFLLNCAGGGTCGTCMVE 128
           R+IM D+ I+LY  Y + ++NC GGG+CGTC+VE
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVE 120

The following BLAST results are available for this feature:

BLAST of CSPI07G21630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU21	1.8e-62	65.43	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of CSPI07G21630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC78	2.2e-108	98.98	2Fe-2S ferredoxin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A5A7UW39	2.0e-104	95.92	Photosynthetic NDH subunit of subcomplex B 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CGA8	3.4e-104	95.92	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A6J1CVZ7	7.7e-101	91.37	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Momordica charant...	[more]
A0A6J1KDJ1	8.3e-95	85.28	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucurbita maxima ...	[more]

BLAST of CSPI07G21630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141758.1	4.6e-108	98.98	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >K...	[more]
KAA0059320.1	4.1e-104	95.92	photosynthetic NDH subunit of subcomplex B 3 [Cucumis melo var. makuwa] >TYK0400...	[more]
XP_008462178.1	6.9e-104	95.92	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
XP_022145222.1	1.6e-100	91.37	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_038899995.1	1.8e-99	90.31	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Benincasa hispida]	[more]

BLAST of CSPI07G21630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16250.1	1.3e-63	65.43	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.1	2.1e-29	43.84	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.3	1.2e-24	42.96	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.4	4.4e-16	40.00	2Fe-2S ferredoxin-like superfamily protein	[more]
AT4G32590.2	1.8e-09	37.23	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 113..161 e-value: 2.2E-10 score: 40.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 90..161 e-value: 1.42429E-8 score: 47.7748
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 73..171 e-value: 1.8E-18 score: 68.2
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 1..169
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 1..169
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 82..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G21630.1	CSPI07G21630.1	mRNA
CSPI07G21630.2	CSPI07G21630.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0051536	iron-sulfur cluster binding