CSPI07G21300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G21300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	serine-rich protein-related
Location	Chr7: 18266873 .. 18267103 (+)
RNA-Seq Expression	CSPI07G21300
Synteny	CSPI07G21300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

mRNA sequence

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

Coding sequence (CDS)

ATGTGTTATCCAACCCTTCCCTTTCACAGACCCACCGCCTTCAGCTTCGCCAGCCACGGAAGGTCGGTTGTAGCGGCGGTGGAAGAGGCCGTCCGGCAGCAGAGAAGTGGCGGTGGATACAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCACAACATCAAAAGCAAAAACAGTTTAA

Protein sequence

MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQGDYKWVSRSTTSKAKTV*

Homology

[Close]

BLAST of CSPI07G21300 vs. ExPASy TrEMBL
Match: A0A0A0KAE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]

BLAST of CSPI07G21300 vs. ExPASy TrEMBL
Match: A0A2G9GMB1 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21010 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHG---RSVVAAVEEAVRQQ--------------RSGGGYK-C 60
          MCYP+  +    A++FAS     R+V  A E A R+Q              R GG  K C
Sbjct: 1  MCYPSGAYWE-CAYNFASRRLLVRAVATATEVAAREQQRANIGGGLAEGGGRGGGITKVC 60

Query: 61 ICSPTTHPGSFKCRFHQGDYKWVSRS 69
          +CSPT HPGSF+CR H G+Y+WV+R+
Sbjct: 61 VCSPTGHPGSFRCRHHHGEYQWVNRT 85

[Close]

BLAST of CSPI07G21300 vs. ExPASy TrEMBL
Match: D7KJG0 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_474355 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]

BLAST of CSPI07G21300 vs. ExPASy TrEMBL
Match: A0A2C9W3Q9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVE----EAVRQQRSGGG-----YKCICSPTTHPG 60
          MCY  +PF      +       V  AVE    E  R + SGG       KC+CSPT HPG
Sbjct: 1  MCYSVMPFVTHARTAEEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTRHPG 60

Query: 61 SFKCRFHQGDYKWVSRST 70
          SF+CR H GDY+W  R T
Sbjct: 61 SFRCRHHHGDYEWGRRIT 78

[Close]

BLAST of CSPI07G21300 vs. ExPASy TrEMBL
Match: A0A4D6LSX7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g180 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVR----QQRSGGGYKCICSPTTHPGSFKCR 60
          MC+P +PF      SF  H R V++AV            SG   +C+CSP+ HPGSF+CR
Sbjct: 1  MCHPGIPFLNRE--SFILHRRWVLSAVARQAHGGGSSGESGSAKRCVCSPSQHPGSFRCR 60

Query: 61 FHQGDYKWVSRST 70
           H G+Y W  R++
Sbjct: 61 LHHGEYVWRGRAS 71

[Close]

BLAST of CSPI07G21300 vs. NCBI nr
Match: KGN45357.1 (hypothetical protein Csa_016243 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSTTSKAKT 76
          DYKWVSRSTTSKAKT
Sbjct: 61 DYKWVSRSTTSKAKT 75

[Close]

BLAST of CSPI07G21300 vs. NCBI nr
Match: PIN06441.1 (hypothetical protein CDL12_21010 [Handroanthus impetiginosus])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHG---RSVVAAVEEAVRQQ--------------RSGGGYK-C 60
          MCYP+  +    A++FAS     R+V  A E A R+Q              R GG  K C
Sbjct: 1  MCYPSGAYWE-CAYNFASRRLLVRAVATATEVAAREQQRANIGGGLAEGGGRGGGITKVC 60

Query: 61 ICSPTTHPGSFKCRFHQGDYKWVSRS 69
          +CSPT HPGSF+CR H G+Y+WV+R+
Sbjct: 61 VCSPTGHPGSFRCRHHHGEYQWVNRT 85

[Close]

BLAST of CSPI07G21300 vs. NCBI nr
Match: XP_010500835.1 (PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1  MCYPTLP---------FHRPTAFSFASHGRSVVAAVEEAVRQQRSGGG-YKCICSPTTHP 60
          MCY  LP         FH  T  +  +   +V + VE     +  GGG  KC+CSP+ HP
Sbjct: 1  MCYKILPPLVVIPSGSFHENTPVAEVTTVATVKSEVETTAGHRNGGGGKKKCVCSPSKHP 60

Query: 61 GSFKCRFHQGDYKWVSRSTTSKAKT 76
           SFKCR+HQ +Y+W+  S++S + +
Sbjct: 61 RSFKCRYHQHEYQWLPSSSSSSSSS 85

[Close]

BLAST of CSPI07G21300 vs. NCBI nr
Match: KAG8656900.1 (hypothetical protein MANES_03G019500v8 [Manihot esculenta])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 35/81 (43.21%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVE----EAVRQQRSGGG-----YKCICSPTTHPG 60
          MCY  +PF      +       V  AVE    E  R + SGG       KC+CSPT HPG
Sbjct: 1  MCYSVMPFVTHARTAEEEQRWLVFQAVETTGAEPARTETSGGDGGGSMKKCVCSPTRHPG 60

Query: 61 SFKCRFHQGDYKWVSRSTTSK 73
          SF+CR H GDY+W  R T +K
Sbjct: 61 SFRCRHHHGDYEWGRRITKNK 81

[Close]

BLAST of CSPI07G21300 vs. NCBI nr
Match: XP_002894376.1 (uncharacterized protein LOC9330437 [Arabidopsis lyrata subsp. lyrata] >EFH70635.1 hypothetical protein ARALYDRAFT_474355 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  MCYPTLP--------FHRPTAFSFASHGRSVVAAVE-EAVRQQRSGGG--YKCICSPTTH 60
          MCY  LP        FH  T  +       V AA E EA    RSGGG   KC+CSP+ H
Sbjct: 1  MCYKILPPLVILPENFHENTTVA------EVTAATEVEASAGHRSGGGGKKKCVCSPSKH 60

Query: 61 PGSFKCRFHQGDYKWVSRSTTS 72
          P SFKCR+HQ +Y+W+  S++S
Sbjct: 61 PRSFKCRYHQHEYQWLPSSSSS 76

[Close]

BLAST of CSPI07G21300 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-10
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1  MCY--------PTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T  +  +    V A           GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSTTSKAKT 76
          FKCR+HQ +Y+W+  S++S + +
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSS 83

[Close]

BLAST of CSPI07G21300 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 0


Query: 18 SHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH  S V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of CSPI07G21300 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 0


Query: 18 SHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH  S V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of CSPI07G21300 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.2e-05
Identity = 19/40 (47.50%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 20 GRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQ 60
          G SV  +   +VRQ        C+C+PTTHPGSF+CR+H+
Sbjct: 50 GGSVGMSKSSSVRQ-------NCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of CSPI07G21300 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 5.2e-05
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 41 KCICSPTTHPGSFKCRFHQ 60
          KC+CSPTTHPGSF+C FH+
Sbjct: 70 KCLCSPTTHPGSFRCSFHR 88

The following BLAST results are available for this feature:

BLAST of CSPI07G21300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G21300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE1	1.1e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1	[more]
A0A2G9GMB1	8.7e-08	43.02	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21010 P...	[more]
D7KJG0	1.1e-07	45.12	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]
A0A2C9W3Q9	3.3e-07	43.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019500 PE=4 SV=...	[more]
A0A4D6LSX7	3.3e-07	41.10	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g180 PE=4 SV=1	[more]

BLAST of CSPI07G21300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45357.1	2.2e-37	100.00	hypothetical protein Csa_016243 [Cucumis sativus]	[more]
PIN06441.1	1.8e-07	43.02	hypothetical protein CDL12_21010 [Handroanthus impetiginosus]	[more]
XP_010500835.1	1.8e-07	37.65	PREDICTED: uncharacterized protein LOC104778157 [Camelina sativa]	[more]
KAG8656900.1	1.8e-07	43.21	hypothetical protein MANES_03G019500v8 [Manihot esculenta]	[more]
XP_002894376.1	2.3e-07	45.12	uncharacterized protein LOC9330437 [Arabidopsis lyrata subsp. lyrata] >EFH70635....	[more]

BLAST of CSPI07G21300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	9.2e-10	34.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.1	6.2e-06	47.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	6.2e-06	47.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	5.2e-05	47.50	serine-rich protein-related	[more]
AT5G20370.1	5.2e-05	78.95	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 2..71
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G21300.1	CSPI07G21300.1	mRNA