Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAATCTCTCCTTTTGGAAAGGAAATTGGTGTGAGATCAGCCCCGTATACACATAAACCATGGTTATTTGCCTTATCTACCATCCAAAATGGCTTCGTAAAAGAAATGTGGAATTGTAGCATTTTGGATTGGGACTTCAAACCAAGAAGATCCCTTCGAAATTGTGAACATCATGCGCAGTGGAATGAAATCAAGCGACATTTCAAAACCCCAAATGACAGTAGAGCTATTGACTATCCCACTTGGAAATTGAACATTAATGGTAAATTTGTCGTTGCTTCTGTTAAGAAAGTCTTTTTTAGCTTGAACCAAAGAGATGATATTGATATTGATGTTAACATCTTTTCTCAACTTTGGAAAACCAAAATCCCCAAGAAATGTCGTTTTTTCATATGGTCTCTTTTACATTGTTGTATTAACACTGCTGACATTCTTCAGAGAAAAGTTTCAACTCTCAATCTGAGTTAA
mRNA sequence
ATGGCGAAAATCTCTCCTTTTGGAAAGGAAATTGGTGTGAGATCAGCCCCGTATACACATAAACCATGGTTATTTGCCTTATCTACCATCCAAAATGGCTTCGTAAAAGAAATGTGGAATTGTAGCATTTTGGATTGGGACTTCAAACCAAGAAGATCCCTTCGAAATTGTGAACATCATGCGCAGTGGAATGAAATCAAGCGACATTTCAAAACCCCAAATGACAGTAGAGCTATTGACTATCCCACTTGGAAATTGAACATTAATGGTAAATTTGTCGTTGCTTCTGTTAAGAAAGTCTTTTTTAGCTTGAACCAAAGAGATGATATTGATATTGATGTTAACATCTTTTCTCAACTTTGGAAAACCAAAATCCCCAAGAAATGTCGTTTTTTCATATGGTCTCTTTTACATTGTTGTATTAACACTGCTGACATTCTTCAGAGAAAAGTTTCAACTCTCAATCTGAGTTAA
Coding sequence (CDS)
ATGGCGAAAATCTCTCCTTTTGGAAAGGAAATTGGTGTGAGATCAGCCCCGTATACACATAAACCATGGTTATTTGCCTTATCTACCATCCAAAATGGCTTCGTAAAAGAAATGTGGAATTGTAGCATTTTGGATTGGGACTTCAAACCAAGAAGATCCCTTCGAAATTGTGAACATCATGCGCAGTGGAATGAAATCAAGCGACATTTCAAAACCCCAAATGACAGTAGAGCTATTGACTATCCCACTTGGAAATTGAACATTAATGGTAAATTTGTCGTTGCTTCTGTTAAGAAAGTCTTTTTTAGCTTGAACCAAAGAGATGATATTGATATTGATGTTAACATCTTTTCTCAACTTTGGAAAACCAAAATCCCCAAGAAATGTCGTTTTTTCATATGGTCTCTTTTACATTGTTGTATTAACACTGCTGACATTCTTCAGAGAAAAGTTTCAACTCTCAATCTGAGTTAA
Protein sequence
MAKISPFGKEIGVRSAPYTHKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLWKTKIPKKCRFFIWSLLHCCINTADILQRKVSTLNLS*
Homology
BLAST of CSPI07G21020 vs. ExPASy TrEMBL
Match:
A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 0
Query: 20 HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAI 79
H P LFALST Q+ +K+MWN +++DWD KPRR LR+ E H W E+K
Sbjct: 620 HYPRLFALSTNQDNSIKDMWNTTLMDWDLKPRRQLRDWE-HPLWAELKNSLNASFCENGR 679
Query: 80 DYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLWKTKIPKKCRFFIWSLLHC 139
D PTW LN +G + VASVKK +Q + N F LWK+ IPKKC+FFIW+LL+
Sbjct: 680 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 739
Query: 140 CINTADILQRKVSTL 155
+NTAD L +++ L
Sbjct: 740 SVNTADQLTKRMPNL 753
BLAST of CSPI07G21020 vs. ExPASy TrEMBL
Match:
A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 0
Query: 20 HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAI 79
H P LFALST ++ +++MWN +++DWD PRR LR E + W E+K
Sbjct: 280 HYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWE-YPLWAELKNSLNASFCENGK 339
Query: 80 DYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWSL 139
D PTW LN NG + VASVKK +L Q D +D+ N F LWKT IPKKC FFIW+L
Sbjct: 340 DSPTWTLNSNGLYTVASVKK---ALQQPDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTL 399
Query: 140 LHCCINTADILQRKVSTL 155
L+ +NTA+ L +++ L
Sbjct: 400 LYDSVNTAEQLMKRLPNL 413
BLAST of CSPI07G21020 vs. ExPASy TrEMBL
Match:
A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 0
Query: 19 THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRA 78
+H P L+ALST + +++MWN +++DWD PRR LR E H W E+K
Sbjct: 792 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWE-HPLWAELKNSLNASFCENG 851
Query: 79 IDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWS 138
D P W LN NG + VASVKK +L Q + +D N F LWKT IPKKC FFIW+
Sbjct: 852 NDSPMWTLNSNGLYTVASVKK---TLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWT 911
Query: 139 LLHCCINTADILQRKVSTL 155
LL+ +NTA+ L +++ L
Sbjct: 912 LLYDSVNTAEQLMKRLPNL 926
BLAST of CSPI07G21020 vs. ExPASy TrEMBL
Match:
A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.7e-24
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 0
Query: 19 THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRA 78
+H P L+ALST + +++MWN +++DWD PRR LR E H W E+K
Sbjct: 792 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWE-HPLWAELKNSLNASFCENG 851
Query: 79 IDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWS 138
D P W LN NG + VASVKK +L Q + +D N F LWKT IPKKC FFIW+
Sbjct: 852 NDSPMWTLNSNGLYTVASVKK---TLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWT 911
Query: 139 LLHCCINTADILQRKVSTL 155
LL+ +NTA+ L +++ L
Sbjct: 912 LLYDSVNTAEQLMKRLPNL 926
BLAST of CSPI07G21020 vs. ExPASy TrEMBL
Match:
A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 0
Query: 22 PWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAIDY 81
P LFALST + G VK+ WN S DW R LR+ E + W+ IK TP +R +
Sbjct: 226 PRLFALSTNKKGSVKDFWNPSSNDWHLHINRPLRDHEKNL-WHNIKASLPTPLPNRGLPK 285
Query: 82 PTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLWKTKIPKKCRFFIWSLLHCCI 141
P WKLN N F ASVKK+ S + N++ LWK + PKKC+FFIW+L+H CI
Sbjct: 286 PLWKLNSNNIFDTASVKKI-LSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 345
Query: 142 NTADILQRKVSTLNLS 158
NTAD LQ+++ LS
Sbjct: 346 NTADRLQKRLPNWALS 359
BLAST of CSPI07G21020 vs. NCBI nr
Match:
TYK10356.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 0
Query: 20 HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAI 79
H P LFALST Q+ +K+MWN +++DWD KPRR LR+ E H W E+K
Sbjct: 620 HYPRLFALSTNQDNSIKDMWNTTLMDWDLKPRRQLRDWE-HPLWAELKNSLNASFCENGR 679
Query: 80 DYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLWKTKIPKKCRFFIWSLLHC 139
D PTW LN +G + VASVKK +Q + N F LWK+ IPKKC+FFIW+LL+
Sbjct: 680 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 739
Query: 140 CINTADILQRKVSTL 155
+NTAD L +++ L
Sbjct: 740 SVNTADQLTKRMPNL 753
BLAST of CSPI07G21020 vs. NCBI nr
Match:
XP_031744692.1 (uncharacterized protein LOC116405125 [Cucumis sativus])
HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 0
Query: 16 APYTH-KPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPN 75
+P+T P LFALST + + MWN DWD PRR LR+ E W ++K
Sbjct: 35 SPFTQTNPRLFALSTKKGDSIANMWNAEKADWDLYPRRPLRSVE-EVLWEDMKVSLPPLP 94
Query: 76 DSRAIDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDVNIFSQLWKTKIPKKCRFFIW 135
DS D P W LN NG F VAS+K NQ + + D I++ LWK+ IPK+C+FF+W
Sbjct: 95 DS-GFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPKRCKFFVW 154
Query: 136 SLLHCCINTADILQRKVSTLNL 157
+LLH CINT D+LQR++ T NL
Sbjct: 155 TLLHECINTMDMLQRRLPTWNL 174
BLAST of CSPI07G21020 vs. NCBI nr
Match:
KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 125.2 bits (313), Expect = 5.1e-25
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 0
Query: 20 HKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRAI 79
H P LFALST ++ +++MWN +++DWD PRR LR E + W E+K
Sbjct: 280 HYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWE-YPLWAELKNSLNASFCENGK 339
Query: 80 DYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWSL 139
D PTW LN NG + VASVKK +L Q D +D+ N F LWKT IPKKC FFIW+L
Sbjct: 340 DSPTWTLNSNGLYTVASVKK---ALQQPDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTL 399
Query: 140 LHCCINTADILQRKVSTL 155
L+ +NTA+ L +++ L
Sbjct: 400 LYDSVNTAEQLMKRLPNL 413
BLAST of CSPI07G21020 vs. NCBI nr
Match:
XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])
HSP 1 Score: 121.7 bits (304), Expect = 5.7e-24
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 0
Query: 19 THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRA 78
+H P L+ALST + +++MWN +++DWD PRR LR E H W E+K
Sbjct: 792 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWE-HPLWAELKNSLNASFCENG 851
Query: 79 IDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWS 138
D P W LN NG + VASVKK +L Q + +D N F LWKT IPKKC FFIW+
Sbjct: 852 NDSPMWTLNSNGLYTVASVKK---TLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWT 911
Query: 139 LLHCCINTADILQRKVSTL 155
LL+ +NTA+ L +++ L
Sbjct: 912 LLYDSVNTAEQLMKRLPNL 926
BLAST of CSPI07G21020 vs. NCBI nr
Match:
KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 121.7 bits (304), Expect = 5.7e-24
Identity = 61/139 (43.88%), Postives = 82/139 (58.99%), Query Frame = 0
Query: 19 THKPWLFALSTIQNGFVKEMWNCSILDWDFKPRRSLRNCEHHAQWNEIKRHFKTPNDSRA 78
+H P L+ALST + +++MWN +++DWD PRR LR E H W E+K
Sbjct: 792 SHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWE-HPLWAELKNSLNASFCENG 851
Query: 79 IDYPTWKLNINGKFVVASVKKVFFSLNQRDDIDIDV---NIFSQLWKTKIPKKCRFFIWS 138
D P W LN NG + VASVKK +L Q + +D N F LWKT IPKKC FFIW+
Sbjct: 852 NDSPMWTLNSNGLYTVASVKK---TLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWT 911
Query: 139 LLHCCINTADILQRKVSTL 155
LL+ +NTA+ L +++ L
Sbjct: 912 LLYDSVNTAEQLMKRLPNL 926
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CJ08 | 1.3e-26 | 46.67 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TES3 | 2.5e-25 | 45.65 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3DM72 | 2.7e-24 | 43.88 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S4E2K5 | 2.7e-24 | 43.88 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
A0A5A7TSA7 | 1.0e-23 | 45.59 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
TYK10356.1 | 2.7e-26 | 46.67 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
XP_031744692.1 | 1.0e-25 | 45.77 | uncharacterized protein LOC116405125 [Cucumis sativus] | [more] |
KAA0040037.1 | 5.1e-25 | 45.65 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
XP_016902461.1 | 5.7e-24 | 43.88 | PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo] | [more] |
KAA0039770.1 | 5.7e-24 | 43.88 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... | [more] |
Match Name | E-value | Identity | Description | |