CSPI07G17880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G17880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Type B response regulator
Location	Chr7: 16084903 .. 16085434 (-)
RNA-Seq Expression	CSPI07G17880
Synteny	CSPI07G17880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAGTAAGCTCATTCATGTTTCTCAAATTTGAATTAACCTTCAAATTACTAATTAATACAACTTCTCACATTCTAGTTATGAAAATTAGATAATTACAGTAACCCATTCTTATATTATTATGAAACGTCTTTGGAATGTTCGATAATATGTGTGGTTAAGCCAAGGAAGATAATTGATCCATTATTATTGATTTTGATTCAGATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA

mRNA sequence

ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA

Coding sequence (CDS)

ATGAGCGACGATCTTAATAATCAACCTTGCACTTCACCTCATCATTTTTGGTTGACGGATATGCCTGTTAACAATAGAAGCTTAGGAAGAGAAGAAAACTCAGCCGTCCCGACTGCCTCGATCAATATTGGAGAATTTGGTGAATCGTCCACCGGAGAATTGGGTGGTCGGTCCGTGGCAGAAAGTGGAGATCAAAACAATTCTTTTGATGCTGATGAGCCTTTACAGAGACAAGAAATTTTCCCTAGAAGGACACGTTTCATTTGGACTGATGAATACCATCGAATATTTGTTGAGGCTGTTGATCGTTTAACACTTCAGAGTAAGTGTTAA

Protein sequence

MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVAESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQSKC*

Homology

[Close]

BLAST of CSPI07G17880 vs. ExPASy TrEMBL
Match: A0A0A0KB26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60
           MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA
Sbjct: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60

Query: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 108
           ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ
Sbjct: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 107

[Close]

BLAST of CSPI07G17880 vs. ExPASy TrEMBL
Match: A0A5D3D1X5 (Type B response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001420 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-20
Identity = 63/96 (65.62%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 14  HHFWLTDMPVNNRSLGREENSA-VPTASINIGEFGESSTGELGGRSVAESGDQNNSFDAD 73
           H FWL+DMPV+ R+L  EENSA VPTASI+ GE G S T ELGG S A+ G + N FD D
Sbjct: 12  HDFWLSDMPVDYRNLVSEENSAPVPTASISTGELGGSITRELGGPSTADGG-EINYFDVD 71

Query: 74  EPLQ-RQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 108
           E LQ R  I PRRTRFIWT E H+IFVEAV+ LTLQ
Sbjct: 72  EALQERTGIGPRRTRFIWTPECHQIFVEAVNTLTLQ 106

[Close]

BLAST of CSPI07G17880 vs. NCBI nr
Match: KAE8646356.1 (hypothetical protein Csa_015559 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60
           MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA
Sbjct: 1   MSDDLNNQPCTSPHHFWLTDMPVNNRSLGREENSAVPTASINIGEFGESSTGELGGRSVA 60

Query: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQSKC 111
           ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQSKC
Sbjct: 61  ESGDQNNSFDADEPLQRQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQSKC 110

[Close]

BLAST of CSPI07G17880 vs. NCBI nr
Match: KAA0046668.1 (type B response regulator [Cucumis melo var. makuwa] >TYK18203.1 type B response regulator [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 63/96 (65.62%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 14  HHFWLTDMPVNNRSLGREENSA-VPTASINIGEFGESSTGELGGRSVAESGDQNNSFDAD 73
           H FWL+DMPV+ R+L  EENSA VPTASI+ GE G S T ELGG S A+ G + N FD D
Sbjct: 12  HDFWLSDMPVDYRNLVSEENSAPVPTASISTGELGGSITRELGGPSTADGG-EINYFDVD 71

Query: 74  EPLQ-RQEIFPRRTRFIWTDEYHRIFVEAVDRLTLQ 108
           E LQ R  I PRRTRFIWT E H+IFVEAV+ LTLQ
Sbjct: 72  EALQERTGIGPRRTRFIWTPECHQIFVEAVNTLTLQ 106

The following BLAST results are available for this feature:

BLAST of CSPI07G17880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G17880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB26	1.0e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405920 PE=3 SV=1	[more]
A0A5D3D1X5	2.9e-20	65.63	Type B response regulator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CSPI07G17880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646356.1	1.4e-56	100.00	hypothetical protein Csa_015559 [Cucumis sativus]	[more]
KAA0046668.1	5.9e-20	65.63	type B response regulator [Cucumis melo var. makuwa] >TYK18203.1 type B response...	[more]

BLAST of CSPI07G17880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	PANTHER	PTHR23143:SF23	ZINC FINGER PROTEIN 729-LIKE	coord: 2..100
IPR026737	Golgin subfamily A member 6-like	PANTHER	PTHR23143	TRICHOHYALIN-RELATED	coord: 2..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G17880.1	CSPI07G17880.1	mRNA