CSPI07G17720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G17720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionKeratin, type I cytoskeletal 9-like
LocationChr7: 15963602 .. 15964006 (-)
RNA-Seq ExpressionCSPI07G17720
SyntenyCSPI07G17720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

mRNA sequence

ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Coding sequence (CDS)

ATGGCTGTGGCAAGATGTTTCAAGCTCTTACCCACCCTTTTCTTAGTGTTTGTTTGGCAATATTGTGCTAAAGTTGGGGCCAGTGGCTTTTTCGACGACTTTGACAGCGGTTCATTTGGATCAAGTGGTGTTGGGATGCTAGTGATCAAGAATCGTGGCGTTGCACCTAACTCAAACATGATAGATCCTAAAGAATTAGCTCCCGAAACTACTCGTCCGATTGAGACTAAAACTACACAGAATAAAGATAACAAAGATTCATCATCCAATATCAAAATTACAGCTAATAACAGAAAGATTGGCACTACTGTTTCATATGATCGTATTAAAACTAATATGAAGATTGGTGGAAACATTGATCTTTTTGATCATGGAAGAATAATTATTCCAAAGATCCAAGTTTAA

Protein sequence

MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNIDLFDHGRIIIPKIQV*
Homology
BLAST of CSPI07G17720 vs. ExPASy TrEMBL
Match: A0A0A0K668 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60
           MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM
Sbjct: 1   MAVARCFKLLPTLFLVFVWQYCAKVGASGFFDDFDSGSFGSSGVGMLVIKNRGVAPNSNM 60

Query: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120
           IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID
Sbjct: 61  IDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKIGGNID 120

Query: 121 LFDHGRIIIPKIQV 135
           LFDHGRIIIPKIQV
Sbjct: 121 LFDHGRIIIPKIQV 134

BLAST of CSPI07G17720 vs. ExPASy TrEMBL
Match: A0A5D3D1L6 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00710 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M + R  KL   + LVF WQYC KV A     +GFF DFD GSFGS GVG+L    +GV+
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFGSFGSGGVGILDDTKKGVS 68

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
                      AP +   I   +  NKD++ SS + + T N    G   S D  K N+K 
Sbjct: 69  -----------APASAPSIAPTSFDNKDDEASSFDFEFTKNING-GVGASNDNHKINLKG 121

Query: 121 GGNIDL 122
            G +D+
Sbjct: 129 SGTLDV 121

BLAST of CSPI07G17720 vs. ExPASy TrEMBL
Match: A0A5A7VI20 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001710 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M + R  KL   + LVF WQYC KV A     +GFF DFD GSFGS GVG+L     GV+
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFGSFGSGGVGILDDTKNGVS 68

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
                      AP +   I   +  NKD++ SS + + T N    G   S D  K N+K 
Sbjct: 69  -----------APASAPSIAPTSFDNKDDEASSFDFEFTKNING-GVGASNDNHKINLKG 121

Query: 121 GGNIDL 122
            G +D+
Sbjct: 129 SGTLDV 121

BLAST of CSPI07G17720 vs. ExPASy TrEMBL
Match: A0A0A0K5G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M++A   KL  T+ L+  WQYCAKV A     +GFF DF+ GSFGS G G++     G +
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLGSFGSGGAGIMGGTKNGGS 60

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
           P     +  E+AP    P+   T  N ++  +SS     + N   G  +S    K N+K 
Sbjct: 61  P----ANAPEMAPGIA-PVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKG 120

Query: 121 GGNIDL 122
            G +DL
Sbjct: 121 SGTLDL 120

BLAST of CSPI07G17720 vs. NCBI nr
Match: TYK18141.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M + R  KL   + LVF WQYC KV A     +GFF DFD GSFGS GVG+L    +GV+
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFGSFGSGGVGILDDTKKGVS 68

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
                      AP +   I   +  NKD++ SS + + T N    G   S D  K N+K 
Sbjct: 69  -----------APASAPSIAPTSFDNKDDEASSFDFEFTKNING-GVGASNDNHKINLKG 121

Query: 121 GGNIDL 122
            G +D+
Sbjct: 129 SGTLDV 121

BLAST of CSPI07G17720 vs. NCBI nr
Match: KAA0067982.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-06
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 0

Query: 1   MAVARCFKLLPTLFLVFVWQYCAKVGA-----SGFFDDFDSGSFGSSGVGMLVIKNRGVA 60
           M + R  KL   + LVF WQYC KV A     +GFF DFD GSFGS GVG+L     GV+
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFGSFGSGGVGILDDTKNGVS 68

Query: 61  PNSNMIDPKELAPETTRPIETKTTQNKDNKDSSSNIKITANNRKIGTTVSYDRIKTNMKI 120
                      AP +   I   +  NKD++ SS + + T N    G   S D  K N+K 
Sbjct: 69  -----------APASAPSIAPTSFDNKDDEASSFDFEFTKNING-GVGASNDNHKINLKG 121

Query: 121 GGNIDL 122
            G +D+
Sbjct: 129 SGTLDV 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6681.3e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399270 PE=4 SV=1[more]
A0A5D3D1L62.2e-0638.89Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VI203.8e-0638.89Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A0A0K5G87.8e-0435.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYK18141.14.5e-0638.89keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
KAA0067982.17.7e-0638.89keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G17720.1CSPI07G17720.1mRNA