CSPI07G15330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G15330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Fanconi anemia group D2 protein
Location	Chr7: 14011110 .. 14012040 (+)
RNA-Seq Expression	CSPI07G15330
Synteny	CSPI07G15330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTGTCGATGTGCTCTTTCATCTGATGCAAGTTTTGTTTCCACCCTTCAATTTTTCGCCTACTTTCACTTTCCATGAAGGTTTTCTGATCCTTGATTTTTTCCCCTCTCTTGATACAGATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGGTATTTCTCTTATTGTGTTACTGATGGAGCTTGAAACGTAAATACAGAGCTGTTGGTTTTTATGTGCAATGTGTTTATATCTTTTGCTGATGCAAAATTGAGACGGAGAAAAGAGTCGGACTTTCAACCATGGTAAATTTATTTTATTTTTTGTTTAGAGGGTAAAATGTGACGTGCAAAATAAAGGGAAATCTGTAAACTGGTGTAGTTCTTGCAACACACTCCAGTGCTTAAGTTATAGACTGGAAAAGGGTAGAAGCTCTAGGATTTGAGAGTGAGACCTTACTCGAAGCTATAACGATCTAATTATTAATAGAAGACTTAGGTTATCCTCTATAGAGTTTCGAAGGTAACTCTTTATCTTCTCGAGTTGGGGCGTGGCGGATGCATTGGCCATTTTCCTAGGGCCAAGTTTGAGCACCTTCCTAAAGGCATATTTTGGTCCTGGCACGGTGTCATTGGGTTGGCTCACGCTCGCATATGCCTCGTTAGGCATTTTGTTAGGCTCTGTCAAGCACATCACCTTGGGCCAATGGTCCTAGGGTGCTACTGTTGATAAGAATCACGTTAATGTCCTTGGCTCCGTTGCTTATGTTCTTGTTTTATGTCGATGGTACTCTTTGATTCAAAATCAACCATAA

mRNA sequence

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTGTCGATGTGCTCTTTCATCTGATGCAAGTTTTATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGGGTGCTACTGTTGATAAGAATCACGTTAATGTCCTTGGCTCCGTTGCTTATGTTCTTGTTTTATGTCGATGGTACTCTTTGATTCAAAATCAACCATAA

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTTTGGTTCAGTTTAGGATTCGCGACAACAGCTGCTTCCATTTCCCATTTCGTCTGGAGAGATCTATTGGCTTGTCGATGTGCTCTTTCATCTGATGCAAGTTTTATGGAGCGGAGTTTTGATGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCCGCTCGAAACCGGAATTCGGTTTCATCTGCTGAGGGTGCTACTGTTGATAAGAATCACGTTAATGTCCTTGGCTCCGTTGCTTATGTTCTTGTTTTATGTCGATGGTACTCTTTGATTCAAAATCAACCATAA

Protein sequence

MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESARNRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRWYSLIQNQP*

Homology

[Close]

BLAST of CSPI07G15330 vs. ExPASy TrEMBL
Match: A0A0A0K8L3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLA RCALSSDASFMERSFDALEARISNLESAR
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61 NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW 94
          NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW
Sbjct: 61 NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW 93

[Close]

BLAST of CSPI07G15330 vs. ExPASy TrEMBL
Match: A0A1S3BGX2 (uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAEGA 72
          NRNS+SSAE A
Sbjct: 61 NRNSISSAEQA 68

[Close]

BLAST of CSPI07G15330 vs. ExPASy TrEMBL
Match: A0A1S3BGW3 (uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAE 70
          NRNS+SSAE
Sbjct: 61 NRNSISSAE 66

[Close]

BLAST of CSPI07G15330 vs. ExPASy TrEMBL
Match: A0A1S3BHI8 (uncharacterized protein LOC103489712 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAE 70
          NRNS+SSAE
Sbjct: 61 NRNSISSAE 66

[Close]

BLAST of CSPI07G15330 vs. ExPASy TrEMBL
Match: A0A6J1JNH5 (uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488481 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.0e-19
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFA T+ASIS FVWRDLLA RCALSSD   +ER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSD---IERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAEGATVD 75
          NR+S+ SAE A  +
Sbjct: 61 NRDSIPSAEQANAE 71

[Close]

BLAST of CSPI07G15330 vs. NCBI nr
Match: KGN44712.1 (hypothetical protein Csa_016169 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.3e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLA RCALSSDASFMERSFDALEARISNLESAR
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASFMERSFDALEARISNLESAR 60

Query: 61 NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW 94
          NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW
Sbjct: 61 NRNSVSSAEGATVDKNHVNVLGSVAYVLVLCRW 93

[Close]

BLAST of CSPI07G15330 vs. NCBI nr
Match: XP_004148945.1 (uncharacterized protein LOC101218167 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 65/69 (94.20%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFSLGFATTAASISHFVWRDLLA RCALSSD   MERSFDALEARISNLESAR
Sbjct: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSD---MERSFDALEARISNLESAR 60

Query: 61 NRNSVSSAE 70
          NRNSVSSAE
Sbjct: 61 NRNSVSSAE 66

[Close]

BLAST of CSPI07G15330 vs. NCBI nr
Match: XP_008447214.1 (PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo] >XP_008447215.1 PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAEGA 72
          NRNS+SSAE A
Sbjct: 61 NRNSISSAEQA 68

[Close]

BLAST of CSPI07G15330 vs. NCBI nr
Match: XP_008447216.1 (PREDICTED: uncharacterized protein LOC103489712 isoform X3 [Cucumis melo] >XP_008447217.1 PREDICTED: uncharacterized protein LOC103489712 isoform X3 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAE 70
          NRNS+SSAE
Sbjct: 61 NRNSISSAE 66

[Close]

BLAST of CSPI07G15330 vs. NCBI nr
Match: XP_008447209.1 (PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo] >XP_008447210.1 PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo] >XP_008447211.1 PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo] >XP_008447213.1 PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRLFWFS+GFATTAASIS FVWRDLLA R AL SD   MER+FDALEARISNLES R
Sbjct: 1  MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---MERNFDALEARISNLESVR 60

Query: 61 NRNSVSSAE 70
          NRNS+SSAE
Sbjct: 61 NRNSISSAE 66

[Close]

BLAST of CSPI07G15330 vs. TAIR 10
Match: AT3G07568.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-12
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 1  MLRTRLFWFSLGFATTAASISHFVWRDLLACRCALSSDASFMERSFDALEARISNLESAR 60
          MLRTRL WF+LGF+ T  SI+H VWRDL A R A+SSD   M+  F ALE R+S LES  
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSD---MKEKFSALEGRVSGLESGG 60

Query: 61 NRN 64
            N
Sbjct: 61 YEN 60

The following BLAST results are available for this feature:

BLAST of CSPI07G15330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G15330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8L3	2.1e-41	98.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1	[more]
A0A1S3BGX2	1.3e-19	83.10	uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BGW3	2.2e-19	84.06	uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BHI8	2.2e-19	84.06	uncharacterized protein LOC103489712 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JNH5	5.0e-19	75.68	uncharacterized protein LOC111488481 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI07G15330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44712.1	4.3e-41	98.92	hypothetical protein Csa_016169 [Cucumis sativus]	[more]
XP_004148945.1	4.0e-23	94.20	uncharacterized protein LOC101218167 [Cucumis sativus]	[more]
XP_008447214.1	2.7e-19	83.10	PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo] >XP_00...	[more]
XP_008447216.1	4.6e-19	84.06	PREDICTED: uncharacterized protein LOC103489712 isoform X3 [Cucumis melo] >XP_00...	[more]
XP_008447209.1	4.6e-19	84.06	PREDICTED: uncharacterized protein LOC103489712 isoform X1 [Cucumis melo] >XP_00...	[more]

BLAST of CSPI07G15330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07568.1	5.8e-12	58.73	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	PANTHER	PTHR34970:SF5	SUBFAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR34970	ABC TRANSPORTER A FAMILY PROTEIN	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G15330.1	CSPI07G15330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane