CSPI07G15230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G15230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LOB domain-containing protein
Location	Chr7: 13918773 .. 13919550 (+)
RNA-Seq Expression	CSPI07G15230
Synteny	CSPI07G15230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCTTCTTCTTCTTCTCCTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTTTCTAATAATAAAATTTACCATATAAACCAACTCATATCATCCAACTTCAAGTTTTAGATTCCATGATAATAAACTTTATCATAATTTTTAAAGAAAAGCAAAACGATCATACTTATTTGATCTCCTCACCTTAAACTTTTGAGTTTATGTTAATTTATTCGAAACCCTAATTTTCGAAATCGAGTTTGATGAGTATTTGAATGGCTGTGGAAATTGTAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

mRNA sequence

ATGGCAGCCTCTTCTTCTTCTTCTCCTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Coding sequence (CDS)

ATGGCAGCCTCTTCTTCTTCTTCTCCTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCGGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA

Protein sequence

MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC*

Homology

[Close]

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-48
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNPTELLYEKSPFCYSDD 141
           + T+ NP     + +   Y  D
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHD 142

[Close]

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.6e-42
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAV 70
           PCGACKFLRRKCV GC+FAPYF HE GA+HF+AIHKVFGASN SKLLAHLP++ R EAAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 71  TISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ 115
           TISYEAQARL+DPIYGCV+HI ALQQQVM L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-40
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 6.4e-38
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 3   ASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 R 124
           R
Sbjct: 149 R 149

[Close]

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot
Match: Q9SJW5 (LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.5e-36
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAV 70
           PCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 71  TISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ 115
           TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.0e-99
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS PPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.4e-93
Identity = 173/184 (94.02%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 172/184 (93.48%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTEL YEKSP  YSDDPFLDLQSWLLAESC+  APE EPAA+PYFEMSVV+SKLAG
Sbjct: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL
Match: A0A6J1DSE8 (LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC111023473 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 155/184 (84.24%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSS  PCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+NLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           T RNP ELLY KSPF  S DP  DLQSWLLAE  SA APE EPAAVP+ EMS+ D  +AG
Sbjct: 121 TIRNPNELLYGKSPF--SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.6e-79
Identity = 149/183 (81.42%), Postives = 158/183 (86.34%), Query Frame = 0


Query: 2   AASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61
           ++SSSSS PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHLP
Sbjct: 4   SSSSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLP 63

Query: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYT 121
           VSHR +AAVTISYEAQARLQDPIYGC+S I ALQ QVMNLRAQVAYLREQAAQILLN Y 
Sbjct: 64  VSHRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYI 123

Query: 122 TRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGD 181
           TRNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY EM + DS LAGD
Sbjct: 124 TRNPNELLYGNS-LSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGD 183

Query: 182 FCC 185
           FCC
Sbjct: 184 FCC 185

[Close]

BLAST of CSPI07G15230 vs. NCBI nr
Match: XP_004150342.1 (LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical protein Csa_015971 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS PPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. NCBI nr
Match: XP_008447245.1 (PREDICTED: LOB domain-containing protein 29 [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 173/184 (94.02%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRN TEL YEKSPF YSDDPFLDLQSWLL ESC+A APE EPAAVPYFEMSV+DSKLAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. NCBI nr
Match: KAA0042058.1 (LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB domain-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 4.3e-92
Identity = 172/184 (93.48%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVA LREQAAQILLNNY
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNPTEL YEKSP  YSDDPFLDLQSWLLAESC+  APE EPAA+PYFEMSVV+SKLAG
Sbjct: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180

Query: 181 DFCC 185
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of CSPI07G15230 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 169/183 (92.35%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAASSSSS PPCGACKFLRRKCVNGCIFAP+FRHELGASHFSAIHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRC+AAVTISYEAQARLQDPIYGCVSHI ALQQQVMNLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           TTRNP EL YEKSPF YSDDP LDLQ+WLLAESCSA APE EPAAVPY EMSVVDS LAG
Sbjct: 121 TTRNPIELPYEKSPF-YSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAG 180

Query: 181 DFC 184
           +FC
Sbjct: 181 NFC 182

[Close]

BLAST of CSPI07G15230 vs. NCBI nr
Match: XP_022156602.1 (LOB domain-containing protein 29-like [Momordica charantia])

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-81
Identity = 155/184 (84.24%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           MAAS+SSS  PCGACKFLRRKCVNGCIFAPYFRHELG SHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASASSSSSPCGACKFLRRKCVNGCIFAPYFRHELGTSHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120
           PVSHRCEAA+TISYEAQARLQDPIYGCVSHI  LQQQV+NLRAQVAYLREQAAQILLNNY
Sbjct: 61  PVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQVAYLREQAAQILLNNY 120

Query: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180
           T RNP ELLY KSPF  S DP  DLQSWLLAE  SA APE EPAAVP+ EMS+ D  +AG
Sbjct: 121 TIRNPNELLYGKSPF--SGDPLQDLQSWLLAEDRSAAAPEFEPAAVPFVEMSLADPNVAG 180

Query: 181 DFCC 185
           D CC
Sbjct: 181 DCCC 182

[Close]

BLAST of CSPI07G15230 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-49
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MAASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF HE GASHF+AIHKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ--ILLN 120
           P+S RCEAA+TISYEAQARLQDPIYGCVSHI ALQQQV+NL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 NYTTRNPTELLYEKSPFCYSDD 141
           + T+ NP     + +   Y  D
Sbjct: 121 SPTSENPNSYYGDTTKAPYHHD 142

[Close]

BLAST of CSPI07G15230 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.7e-41
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   SSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF HE GASHF+AIH+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  CEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
            EAA TI YEAQAR QDPIYGCVSHI +LQQQV+NL+ Q+  L++QA Q ++
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMM 113

[Close]

BLAST of CSPI07G15230 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-39
Identity = 77/121 (63.64%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 3   ASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  E G+++F+A+HKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTT 122
             R +A VTI YEAQAR++DPIYGCV+HI ALQQQV+NL+A+V+YL+   A + L    T
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQT 148

Query: 123 R 124
           R
Sbjct: 149 R 149

[Close]

BLAST of CSPI07G15230 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-37
Identity = 72/104 (69.23%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAV 70
           PCG CKFLRRKCV GC+FAPYF +E G+S+F+AIHKVFGASN SKL++HLP   RC+A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 71  TISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQ 115
           TISYEA +RL DPIYGCVS I +LQQQV++L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of CSPI07G15230 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 73/116 (62.93%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 2   AASSSSSPPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLP 61
           ++SS     PCGACKFLRRKCV GCIFAPYF  E GA+HF+A+HKVFGASN SKLL H+P
Sbjct: 8   SSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVP 67

Query: 62  VSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILL 118
              R +A V+I +EAQARL+DPIYGCVSHI++LQQQV++L+ +++YL+   A + L
Sbjct: 68  EHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLEL 123

The following BLAST results are available for this feature:

BLAST of CSPI07G15230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	2.3e-48	68.31	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	9.6e-42	79.81	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	5.2e-40	70.54	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	6.4e-38	63.64	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SJW5	3.5e-36	69.23	LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 S...	[more]

BLAST of CSPI07G15230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D4	1.0e-99	99.46	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A1S3BGZ5	9.4e-93	94.02	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]
A0A5D3D179	2.1e-92	93.48	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1DSE8	1.7e-81	84.24	LOB domain-containing protein 29-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1KRG7	4.6e-79	81.42	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]

BLAST of CSPI07G15230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150342.1	2.2e-99	99.46	LOB domain-containing protein 29 [Cucumis sativus] >KGN44703.1 hypothetical prot...	[more]
XP_008447245.1	2.0e-92	94.02	PREDICTED: LOB domain-containing protein 29 [Cucumis melo]	[more]
KAA0042058.1	4.3e-92	93.48	LOB domain-containing protein 29 [Cucumis melo var. makuwa] >TYK18001.1 LOB doma...	[more]
XP_038896394.1	4.5e-89	92.35	LOB domain-containing protein 29-like [Benincasa hispida]	[more]
XP_022156602.1	3.5e-81	84.24	LOB domain-containing protein 29-like [Momordica charantia]	[more]

BLAST of CSPI07G15230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	1.7e-49	68.31	lateral organ boundaries-domain 29	[more]
AT2G42440.1	3.7e-41	70.54	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	4.6e-39	63.64	LOB domain-containing protein 18	[more]
AT2G31310.1	2.5e-37	69.23	LOB domain-containing protein 14	[more]
AT4G00220.1	5.6e-37	62.93	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 9..128
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 9..128
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 11..108 e-value: 1.7E-34 score: 118.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 10..112 score: 21.478207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G15230.1	CSPI07G15230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus