CSPI07G14900 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G14900
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 13545009 .. 13545491 (+)
RNA-Seq Expression	CSPI07G14900
Synteny	CSPI07G14900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGTGTCCCTCCACTAACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGATAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACGCTTGCCACCCACTCCATGTGGCAGTTCCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCGTGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGGCACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATATCTTGTTCGGCCTCCCTAAAAGTTGAGGCACTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

mRNA sequence

ATGACACGTGTCCCTCCACTAACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGATAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACGCTTGCCACCCACTCCATGTGGCAGTTCCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCGTGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGGCACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATATCTTGTTCGGCCTCCCTAAAAGTTGAGGCACTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

Coding sequence (CDS)

ATGACACGTGTCCCTCCACTAACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGATAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACGCTTGCCACCCACTCCATGTGGCAGTTCCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCGTGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGGCACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATATCTTGTTCGGCCTCCCTAAAAGTTGAGGCACTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

Protein sequence

MTRVPPLTTSSDATSAKEVPSNGCLKDNARGFGGMSTRGLGGVSAQPVALLPMALPTFVCALFGLPSHTHTLATHSMWQFLSCTPPLRMSCTRAPQQVRAIPTYSPLSTAFKKVSAGTLVLPNVPHPTTYFLGAISCSASLKVEALTHPSYSTTVIRWGS*

Homology

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BLAST of CSPI07G14900 vs. ExPASy TrEMBL
Match: A0A0A0K8H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368190 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 153/160 (95.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MTRVPPLTTSSDATSAKEVPSNGCLKDNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60
           MT VPPLTTSSDATSAKEVPSNGCLK NARGFGGMSTRGLGGVSAQPVALLPMALPTFVC
Sbjct: 1   MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60

Query: 61  ALFGLPSHTHTLATHSMWQFLSCTPPLRMSCTRAPQQVRAIPTYSPLSTAFKKVSAGTLV 120
           ALFGLPSHTHTLATHSMWQ LSCTPPLRMSCT APQQVRAIPTYSPLSTAFKKVSA TLV
Sbjct: 61  ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV 120

Query: 121 LPNVPHPTTYFLGAISCSASLKVEALTHPSYSTTVIRWGS 161
           LPNVPHPTTYFLGA+SCSASLKVEA THPSYSTTVIRWGS
Sbjct: 121 LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS 160

The following BLAST results are available for this feature:

BLAST of CSPI07G14900 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G14900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H1	1.2e-80	95.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G368190 PE=4 SV=1	[more]

BLAST of CSPI07G14900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI07G14900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G14900.1	CSPI07G14900.1	mRNA