CSPI07G13990 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G13990
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionChromo domain-containing protein
LocationChr7: 12529988 .. 12530695 (-)
RNA-Seq ExpressionCSPI07G13990
SyntenyCSPI07G13990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTTACCAACTAGCTACTTAAACGCAAGAGAAGATGACATGGTTATCATGCCGCATAGTCTGCATAACAAAACTGCCTTTCCTCCTTAACTAGGCTTCTACATCTAAGATTCATGCCTAACAACCTGAGGAGGGGGAAAACTTAAAACGTAAGTCAAAAGGATTTTAGTGAGTGATGGGTTTGAAAAAACTTTTTTAGGAAAAGCAACAGGTGCAGACAATAACAAGGTCAAAACGCAAACATATAGTTATCATAGCATCAAGCCATATAAAACAAATCACCATCACAACAAGTGCTACAAGCTCCACGCACTTAAAACATCACGCATTTCATACTCATCCCCTTGCCTAGACCTGAAATTCACATTCAACCAGCGTCATGCGAGTTACCTAGAATTTCCACCACCATCTCGTCACATTCAAACTTTTCTCAAACCTGGGATTCACATTCAACCAGCGTTACATGAGTTACCTAGAATTTCTACCAACGTCTCGTCACATTCAAACTTTTCTCAGACCTGGGATTCAAATTCAACTAGTGTCTCATACATCACTCCTCGCCTAGACCTAGGATTCTCCCCTCGTTATGACTTGAAATTCACACTCGACCAGTGTCACGCAAGTTACCTGGAATTTCCACCAGTGTCTAGCGTCAATAATACATCACAAGTACTCGTCTCGACTTGGGATTCTCCCCTTGCTTGA

mRNA sequence

ATGCGCTTACCAACTAGCTACTTAAACGCAAGAGAAGATGACATGGTTATCATGCCGCATAGAAAAGCAACAGGTGCAGACAATAACAAGGTCAAAACGCAAACATATAGTTATCATAGCATCAAGCCATATAAAACAAATCACCATCACAACAAGTGCTACAAGCTCCACGCACTTAAAACATCACGCATTTCATACTCATCCCCTTGCCTAGACCTGAAATTCACATTCAACCAGCGTCATGCGAGTTACCTAGAATTTCCACCACCATCTCGTCACATTCAAACTTTTCTCAAACCTGGGATTCACATTCAACCAGCGTTACATGAGTTACCTAGAATTTCTACCAACGTCTCGTCACATTCAAACTTTTCTCAGACCTGGGATTCAAATTCAACTAGTGTCTCATACATCACTCCTCGCCTAGACCTAGGATTCTCCCCTCGTTATGACTTGAAATTCACACTCGACCAGTGTCACGCAAGTTACCTGGAATTTCCACCAGTGTCTAGCGTCAATAATACATCACAAGTACTCGTCTCGACTTGGGATTCTCCCCTTGCTTGA

Coding sequence (CDS)

ATGCGCTTACCAACTAGCTACTTAAACGCAAGAGAAGATGACATGGTTATCATGCCGCATAGAAAAGCAACAGGTGCAGACAATAACAAGGTCAAAACGCAAACATATAGTTATCATAGCATCAAGCCATATAAAACAAATCACCATCACAACAAGTGCTACAAGCTCCACGCACTTAAAACATCACGCATTTCATACTCATCCCCTTGCCTAGACCTGAAATTCACATTCAACCAGCGTCATGCGAGTTACCTAGAATTTCCACCACCATCTCGTCACATTCAAACTTTTCTCAAACCTGGGATTCACATTCAACCAGCGTTACATGAGTTACCTAGAATTTCTACCAACGTCTCGTCACATTCAAACTTTTCTCAGACCTGGGATTCAAATTCAACTAGTGTCTCATACATCACTCCTCGCCTAGACCTAGGATTCTCCCCTCGTTATGACTTGAAATTCACACTCGACCAGTGTCACGCAAGTTACCTGGAATTTCCACCAGTGTCTAGCGTCAATAATACATCACAAGTACTCGTCTCGACTTGGGATTCTCCCCTTGCTTGA

Protein sequence

MRLPTSYLNAREDDMVIMPHRKATGADNNKVKTQTYSYHSIKPYKTNHHHNKCYKLHALKTSRISYSSPCLDLKFTFNQRHASYLEFPPPSRHIQTFLKPGIHIQPALHELPRISTNVSSHSNFSQTWDSNSTSVSYITPRLDLGFSPRYDLKFTLDQCHASYLEFPPVSSVNNTSQVLVSTWDSPLA*
Homology
[Close]
BLAST of CSPI07G13990 vs. ExPASy TrEMBL
Match: A0A5A7TDW2 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00680 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 32/70 (45.71%), Postives = 34/70 (48.57%), Query Frame = 0 

Query: 68  SPCLDLKFTFNQRHASYLEFPPPSRHIQTF-----------------------LKPGIHI 115
           SPC DL FT NQ H SYL FPP S HIQ+F                        + GIH 
Sbjct: 49  SPCRDLGFTINQHHTSYLGFPPASHHIQSFSNLGFAFNQCLVTILPRHGILPSSRFGIHN 108

[Close]
BLAST of CSPI07G13990 vs. NCBI nr
Match: KAA0041148.1 (hypothetical protein E6C27_scaffold128G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 32/70 (45.71%), Postives = 34/70 (48.57%), Query Frame = 0 

Query: 68  SPCLDLKFTFNQRHASYLEFPPPSRHIQTF-----------------------LKPGIHI 115
           SPC DL FT NQ H SYL FPP S HIQ+F                        + GIH 
Sbjct: 49  SPCRDLGFTINQHHTSYLGFPPASHHIQSFSNLGFAFNQCLVTILPRHGILPSSRFGIHN 108

The following BLAST results are available for this feature:
BLAST of CSPI07G13990 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G13990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TDW21.3e-0445.71Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
BLAST of CSPI07G13990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041148.12.7e-0445.71hypothetical protein E6C27_scaffold128G00680 [Cucumis melo var. makuwa][more]
BLAST of CSPI07G13990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13990.1CSPI07G13990.1mRNA