CSPI07G13660 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G13660
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr7: 12176931 .. 12177431 (+)
RNA-Seq ExpressionCSPI07G13660
SyntenyCSPI07G13660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCGGCAACGTTGTAGAGGAAACCGAACCAATCAAAATCGATGTTTTTACACATGGAAATGAAGAAACAATTCTCTAA

mRNA sequence

ATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCGGCAACGTTGTAGAGGAAACCGAACCAATCAAAATCGATGTTTTTACACATGGAAATGAAGAAACAATTCTCTAA

Coding sequence (CDS)

ATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCTCAAACACGAAAGAAAGCATGATTGAAACTCTAAGCGTTGAAGTGAAAATCGTTGACAACAAAAAACGGGGAGCAACCGAATTACCTACTTCAAAGAGGAAAGATGAAGTCGGCAACGTTGTAGAGGAAACCGAACCAATCAAAATCGATGTTTTTACACATGGAAATGAAGAAACAATTCTCTAA

Protein sequence

MIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVGNVVEETEPIKIDVFTHGNEETIL*
Homology
BLAST of CSPI07G13660 vs. ExPASy TrEMBL
Match: A0A0L0CF49 (Uncharacterized protein (Fragment) OS=Lucilia cuprina OX=7375 GN=FF38_01558 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 2    IETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPT 61
            I    +E K V+ KK    EL T+K K EVS  K   +E   VE    + KK    +L T
Sbjct: 3173 ISVEELEEKQVETKKAEEKELKTTKDKAEVSEVKAEKLEEKKVE---AEAKKAEEKDLRT 3232

Query: 62   SKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVK 121
            +K K EVS  K   +E   +E    + KK    EL T+K K EVS  K   +E + VE  
Sbjct: 3233 TKEKAEVSEVKAEKLEEKKME---AEAKKAEEKELKTTKEKAEVSEVKAEKVEEMKVE-- 3292

Query: 122  IVDNKKRGATELPTSKRKDEVGNV-VEETEPIKIDVFTHGNEE 164
              + KK    +L T+K K EV  V  E+ E  K++      EE
Sbjct: 3293 -DEAKKAEEKDLKTTKEKAEVSEVKAEKLEEKKMEAEAKKAEE 3326

BLAST of CSPI07G13660 vs. NCBI nr
Match: XP_037810752.1 (LOW QUALITY PROTEIN: titin [Lucilia sericata])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 0

Query: 12   VDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNT 71
            V+ KK    ++ T+K K E+S  K   +E   +E    + KK    +L T+K K EVS  
Sbjct: 3238 VETKKAEEKDVKTTKEKAEISEVKAEKLEDKKLE---AETKKAEEKDLKTTKEKAEVSEV 3297

Query: 72   KESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGAT 131
            K   +E   VE K    KK    E+ T+K K EVS  K   IE + +E    + KK    
Sbjct: 3298 KAEKLEEKKVEAK---TKKAEEKEVKTTKEKAEVSEVKAEKIEEMQLE---AEAKKAEEK 3357

Query: 132  ELPTSKRKDEVGNV-VEETEPIKIDVFTHGNEE 164
            +L T+K K EV  V  E+ E  KI+V     EE
Sbjct: 3358 DLKTTKEKAEVSEVKAEKLEEKKIEVEAKKAEE 3381

BLAST of CSPI07G13660 vs. NCBI nr
Match: KNC30842.1 (hypothetical protein FF38_01558, partial [Lucilia cuprina])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 2    IETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPT 61
            I    +E K V+ KK    EL T+K K EVS  K   +E   VE    + KK    +L T
Sbjct: 3173 ISVEELEEKQVETKKAEEKELKTTKDKAEVSEVKAEKLEEKKVE---AEAKKAEEKDLRT 3232

Query: 62   SKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVK 121
            +K K EVS  K   +E   +E    + KK    EL T+K K EVS  K   +E + VE  
Sbjct: 3233 TKEKAEVSEVKAEKLEEKKME---AEAKKAEEKELKTTKEKAEVSEVKAEKVEEMKVE-- 3292

Query: 122  IVDNKKRGATELPTSKRKDEVGNV-VEETEPIKIDVFTHGNEE 164
              + KK    +L T+K K EV  V  E+ E  K++      EE
Sbjct: 3293 -DEAKKAEEKDLKTTKEKAEVSEVKAEKLEEKKMEAEAKKAEE 3326

BLAST of CSPI07G13660 vs. NCBI nr
Match: XP_023297888.1 (titin homolog, partial [Lucilia cuprina])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 0

Query: 2    IETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPT 61
            I    +E K V+ KK    EL T+K K EVS  K   +E   VE    + KK    +L T
Sbjct: 3242 ISVEELEEKQVETKKAEEKELKTTKDKAEVSEVKAEKLEEKKVE---AEAKKAEEKDLRT 3301

Query: 62   SKRKDEVSNTKESMIETLSVEVKIVDNKKRGATELPTSKRKDEVSNTKESMIETLSVEVK 121
            +K K EVS  K   +E   +E    + KK    EL T+K K EVS  K   +E + VE  
Sbjct: 3302 TKEKAEVSEVKAEKLEEKKME---AEAKKAEEKELKTTKEKAEVSEVKAEKVEEMKVE-- 3361

Query: 122  IVDNKKRGATELPTSKRKDEVGNV-VEETEPIKIDVFTHGNEE 164
              + KK    +L T+K K EV  V  E+ E  K++      EE
Sbjct: 3362 -DEAKKAEEKDLKTTKEKAEVSEVKAEKLEEKKMEAEAKKAEE 3395

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0L0CF491.5e-0435.58Uncharacterized protein (Fragment) OS=Lucilia cuprina OX=7375 GN=FF38_01558 PE=4... [more]
Match NameE-valueIdentityDescription
XP_037810752.11.4e-0435.29LOW QUALITY PROTEIN: titin [Lucilia sericata][more]
KNC30842.13.1e-0435.58hypothetical protein FF38_01558, partial [Lucilia cuprina][more]
XP_023297888.13.1e-0435.58titin homolog, partial [Lucilia cuprina][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13660.1CSPI07G13660.1mRNA