CSPI07G13500 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G13500
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionHistone H3.2
LocationChr7: 11956860 .. 11967094 (+)
RNA-Seq ExpressionCSPI07G13500
SyntenyCSPI07G13500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTGTTAGTTCTATTTGCTATCACTTTTTACGAAATAAAATAGCGGGAAGTTCCGAAGTTTTGTTTTGGTGAGTTCACTGTCTTTGAAATCACCAATTTTTGCCCAAAATTGAAACATTGAGCTCCATTCTCATTCTCCCTAAACCCCTCTCACACCACTGCCTTCAACTCCGAATCAATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTTCCTTTCTCTCTTCTGCATACACCGAGTAGTTTGGATAAATTTTACTTCTTTTTTTTTTTTTTTTTGGTTTGGTAATGGTTTTATCCCTGGAAGTGTTGTTGGATGTATTGAGCTTTTGTCCTTTTTCATACTGCTTCTCGTTTTGTTTGTGAAATCTTAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGGTATTACTTTCTCGCTTTCTGTACAATGATTAGATTTTCGCTTCCACGTTTCTATTTTCTTTGGAGTTATGATGGAAAGATGTTGGGGAGATAATACATTATGGGTCTGCGAGGTCTGGTTTCAGTAGATTTGGTGGCTTAAGAATTTTCGAATATGAGAATCCTGTCATTGTTTTCCATTTTTAACATATAATTTCTTCTCTAAAGAAAGGGGAAAAAACCCGTAGACTCTTTTCATTTTGATGATAGGATAGTAGGAATGAGAGAATAAATTATATCATTTTTTCCCCCGTTTGTGGCAAGGGTAAGATAGAGCTTGGGTGTTCATGCCTCTTCTAAGTTGAAGGCTCACTTGTGGAAGTATGTAGTCTGATTGGGTTGTTTGATATTGCATCGGGCATCCCGAACGTGTGCCAATATGTTGGTAGACAAATTACCCCTCAAATTCGCTTTTACTTATGAAATGAAGGGTACACTTGATAGTAAGGAGGGGATTAATGGGATAAATTGATATGCAGGGTTAGTTACTAATGGTATATAATATATATAAAGCAGAGGCAGTTATTGTCTTAACTCTTATATTTTTTAGTGTAGATATAAAACTCCCGAAAAGTCTGTGAACTTTGTAATTCTCTTTTCTCTATGTATATAAAAGAAAATTACTGATTCCCAGCAGGTTTCTAATTGTGAAGATGTAACTTTTACAACCCATGATGTGGGGTTACTTGTTTCCATATAGATATTTAGTATTGATTTGAGGACCTCTTATGTCTACCAAAACTATCAATTGGACTAGATTGGAGGGATGCTCTGATTGGAAAGTGATAGGAATGCTATTAAGGGTATACTAGTAATTAGCTAAGGAACTTGTTATGATATTTGGTTATAGATTAAGAGAGTGGGAAGGGAAGATGTATACATTATTGTAGCATGAGATTTAGGGCTTGAACTTGAAAGGTATCTCAATAGAGGATCTCCAAGTACCTTGAACACTTATTTTATCTTGTATGTTCTTATTATTTATATTGAAAAGAAGAAGAAGACAAACACAAGGTATATGTGGAAAACCCTAGTACACGGAGAAAAAACCACGATAGGAGTTGCTCTTATTGTTTACTAATAATCCAAAGAATATGAGGGGTAAGAATATATATAGGCTACAACAAGCCCTAACAAATGAGGAAATAAAACTAGGGTACAATAAAATACAAAAATACCCTTGAGGCTTTAAACAATCAACTAGCTCTTATTTCCAACATTCCCCCTCAAGTTGGAGGGTTGATGTCAATTTGACCCAATTTGCTAACACAAGAGTCAATCCTTTGGTGAGAACCATCAACAATTTGTTGACTAGACGGATTGTACGAAATACAGAAACTGTCATTATCAAGTTTCTCCTTTATAAAATGTTTTTCAATCTCCACATGTTTCGTTTCGTCATGTTGAACTGGGATGTCAGCTATGCTTATAGTAGATTTATTATCACATAAGAGCTTCATAAATAACTCACATTCTTGGTGAAGATTAGACAAAGCTTTTTGCAGCCAAATCTCTTCACTGATTCTCAAACTCATAGCTCTATATTCAGCTTCAGCACTACTCCTAGCGACAACACCTTGCTTGTGAGTCCTCCAAGTAACAGATCACCCACACAAAGGTACAGTATCCTAGAGTGGACTTTCTGCCAGTAATTGATCCTACCCAATTAGAGATGGTATAAGCCTCAATACATCTTCCGTTAGTTTTCCTAAACATCAAACCTTTACTTGGAGTAGTTTTCAAATACCTCTAAATACGATTCACATCTTCCATGTGTTCTTCGTAGGGTGCTTGTATAAACTGACTCACAATTAACTAGGGGTGTAAGTCCAATTCGAATAACCCGATAACTCAGACTACCCAACTCATATTATATGGGTTGGGTTAGGTTAGTTTAAAATGTGGGTTGGGTTGGGTCTCAGGTTAGAGGTTCAACCAAACCCAACCCGAAATAATAATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTATATTTATTATTATTATTTATTTAATAAAAGTAAAGTTAAGGGTATTTTGTTAGCTGATCGTATGGAAAGTTAAATGATCGTGTAAAAAGTAAACGATCATTTAAAAGTAGAAAGCTAAATGATATAAGAGGGTAAATGATCGCTAGGTTGGAAATGAAAAAAAAAAAAACAACCCAACCCATATTTTATTGGTTGGGTTGGAAAATTAATTTGAGTTATTCGAGTTGTCAACCCAACCAACCCAAAAATATAGGTTGGGTTGAGAATGTCTCCCAATCCAACCCAACCCAACTTGTTTATACCCCTAATACCAACCGCATAGGAGATATCCTAGTGTGGGATAGATAAATCAACTTTTCCACTAGATGCTGATACTTCTCTTTATCAACAGGAACTTTGTCAACAGAATTTCTCAGTTTCGAATTGAATTCCATAGGAGTATCAGCAGGTCTGCATCCATCATATCTATTTCTTTTAACAGGTCAAGAGTATATTTCCTTTGTGAACAAAGATTCCTTCCCTTGATCTCACCACCTCCATCCCAAGGAAGAATTTCAGATTTAGGTAGAGTGCAAAGATCTCATGTCTTATTCTTCTTAAGCACTCTCATTTCTTCCATGACAATAGTCTTCCACTCTAGACTCTTTATAGCTTCATGTATGTTCTTTGGTACTATTGCAGTATCGAGGCTTGCAGTGAACGCCTTGAACTTAGGCGATAGATTACTGTAAGACATGTAATTACACATAGAATGCTTTGTACAGAACCTAGTATCCCTTCTCAAAGCAATGGGCATGTCAAGAGAGGGATCATAACTTCTTGGTTTGTTTGAGTCATCCTAGTTGGTCTCACCCACCTGTTTTTCTACTAGAGTTTCATCACTTCTGGAAACCGTGTTCTCTTCTTGAGATTAGTCATGTCCTTCTCAACCACATCAATAATATCATCCTCAATGCATAAGTTATTATTATTAAGTTTAGTCATACCATGAGCTTGTGTTGGTTTAGATTCATGGACCGAAGTCGACGGAGCAGTAGGGTGCACTATTTCCTTTCTAAGGTTCTTCCTGTAGTAAGTTATCCAAGGGACTTGGTTGGTGGGTAAAACGGTGTCATGGAGGATGGGTTCAGAAGGCTCAGTAAGAGCTAAAGGAACGAAGGAAATGAGCCACTTAGCCTCTTCACTCATACTCTTTCCTTAAGGAGGGCTCACAGGAAAGAAGGGTTTGTCCTCAAGGAAGGTGACATCCATGGACACAAAATACTTTCGAAAAGGAGAATGATAACACTTATAACCTTTCTGGTGTAGAGGATACCCCTAAAAGGGCATGGTTGAGCACGAGGAGCAAACTTAGTATGGTTAGGGCCATGATTGTGAACGAAGGCAGTGCACTCAAGCACACGGAGAGGAACACCAAGAATAAGTTGTGTGATAGGGTAGAACTCCTTGTGACATTCAAGAAATTTTTGGAGCTGGAGGATGCAAGATGATATTCTATTGATAAGATCATATTGCTAAGGCAGTAAAACATTCTTAAAAGAACTATGCTTTTCATATATACATCATAAGATTACATCATTAAGCATGATACAAACATAGCATGAAAGAACTTGGAAAAGACTATCTTTTCATTGAAAAGTCACTCACAAAGCCTGATCTCCTTTGTTCTTCCACCTTTCTTAACATCTAAACTTTTCTTCCCCCTTCTCGTCTAATCCTTCTTTTCTTCCTTCATCTTAACGCCTTCTTTACAGCTTCTGCTATTCAGCTGTTTTCTTTTGAGAACACTTTAGAGCTTCCTTTCCCACTTTTCTTCTGATCTCACGAGGCTTATTTATACTAAGTTTAAACTAGATTAGTCATCCTTAACTTCATATTTGCTTGCCAGCTCCTCTTTCATGATCTACATATGTCGGTATCCCATTTCCTCTAGTCATGCTTATCCTTAAGTTAACACGTAAAACACTGACTAATTTGAGTCTACAGCCTCACCCGAAATACCTAACTTCCTTCCCTTGCATGGCTTCTTTGCCTGATGCCCAAAGCTCTTTTCTTGTGTTGTGTACCCTTCCTCGCGTGACACCTCTTCTGATCATAACGCAGATCCCAAATCGCTTTCTTCTTATACAACCTAACTTTCTTCTTCACAACCCTTCTATTCCAGAACGCGGGTGCTTCACAGTACAAGAAGAAAATAACTATCAAATGGTTGCGTCTTGCCTCATCCAATTACAGGGTTTGGAGTTGGTACAACTTTCACTTTTAAGGGCCATCGGTAGTAGAGAGCTTTATATTTGTAATTGCAAGATAATTTTTTGGTCAAATATATTTATATTTTCTTGCTCTTGGTTTACTTCAACTAGTTTGGTACAGTTGCTTATTTATAGATAAATAGATAGATAGATAGATAGATATAGCTATATAGATTATTGACTAACTAGTATTCTGTCCTCAAAATTGATAGCCACTTAATGGGAGAACGCAAAATGTCAGGGAAGCTCAAAGTGAGTTTTTTTATTCTGGCTTTTCTTCACCTTTGTATTAAGAACATTTTGATTTTGGTGATAGCTTTTGCATTTGCTTTTTCAACTGGTTTATTCTGTGTAAGTCTTTTTTCGTTCTTTTCTTTTTCTATGGCTTGAAAACTTTTTAATATAGACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCATGGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTAAGGTTTTTTTTTCCTTTTTTCCTTTCTCTTTTTCTCTAGTTCCTATGTATATAAGGACATCTTTGCGTGCATATTTTCACTAATTGATTTTAAGGACCGAAAAATATGGTCAGCCTCTTGATTTCTAGAGAACAGAAATGGTCAGTACAGAAACTCAGGAGAAATGAAAATTCAAATATGAGAAAAAGTATTCAAGAGAAAAGTCCTATATCTAGATTCACACCTCCTTCTGACAAGTATTGTAACCTAGTTTTTTATACTTACAACTATATAAAGTGGTCTTAATGCAGTTTAATATGCTATGTGATTATTTTGATATTCATGTTTCTGGTCTCATATTGAGATGTCTGCTTCTTTGCCATGACAGTAGCCTTGGTGCATATATTCTATTTTATAATAGTTCACTCTATACATTTCTGAGGCTATTTCTTTTGGGGAAAAAAATGGAACTTCAATCAAGAAATGTGGACTATAAAAATAGTGGAGCCCGCCTACCTAGTATAGTTATTGTAGATGCTACTTGCCTAGGATAAAATTCTATGAATTTCTTGACAATGAAATTAGTTGAGAGTAAGGTGGTCTCATGAGATTGATCAAAGTGTGCAATCTAAGTTAGGCACAGACAGATATAAATTTATATTTCCACGTATGTAATGAAAACAAAGGGGGAATATCATGAACAACTTAGTGAAACCCATGATACAGCGTTGAAATCTGCTGGACCCCAGCCCTTCTGCCATTGATTTTTCTAGTCAAATGTTCCACATAAGAGCCTGATAGTCAGCTTGTAAAAAAGAATCCTCCTGTCCTTAAATGGGGCTTTGTTAGTTGAGTTCTTGAAGAGCAAGAACATATTAAATGCTCATTTTGTAATTACTTAACATATATTGCTTTTAAAATTTGATCATGTGACGGTTATAATAAACCCTTGTAGGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAGGAAGTAATTGCTTCTTTTCGTTAGTTTGGTTGAATGAGCCTTCTTTTATTTGTCTACACTAATGAGAGGAGTTGTGTGATGTGTCTTCCATTTTGTCTATACTAGGAAGCAGCTTCTCTTCCTTTGTGCTACACTACTTTTGGCAATGCCGTTCGGAATTTCAAGCTTATAATTTTTTTAATTTGTTGCAACTTGAAGAAGAAATTAAAATTCTCTTTGTTGTGTGAGTGTGTGTGTATTTCCTTTCCAAGCTATTGTTTAATTCTTGATTTATAAAATTTGATGTTGTGGTTTAGTACTTCGAAAATACCTTTTGTTTCCCAAACTTATCTATTATGGAACATAGTACAAATGTCGATTTTACTTAATTGTCTTGGAACAACCGGTTTAAAGCAACTTGTGTGTTTGTGTCATAACTTTGTCCCTCAATAGCCAAGCAAGTATTTGCGCAGTTTACTTCTAATTTTTAAGCGTATCTTGTTATCACCTAGTTCAGGTAGTTGGATTTTATGCCATCTTTAACTATAAACGTTATTTCCATTTAATGAATCATGTTGTTTTGTTTCTTTAAGATGGGAACGAAGCGAAAACATCAAACCTTCTTGTGTTTATTTTGAAGTTCTGAGGACCATAGTAATATTTTCCCTTTATTTTTGTATCTGCGATTATTTAAAGTATGTTAAACAAGCTTTATTCTGTTAGACATCTTTTTTAAATCTTAATTTAGCCTCATACTTCTTATAATTGATCTCTGACTCACTCTTGTATTTCTATCCATGGCATATTTGGCTTAAGACTTAGTGTTGTTACAAGATATTAGGAGTGAGTTAATTTTCACTTTTACGTGCAATTATGTTATTATGATTTCCTTTTTGAGTTAGTTTCTTCCGTCTTTCTGTTGCATACAAAATATTTTTATTTCTTGCAACAAACATTTGGCCGACCTGATTCCATTTTTTGTAGTGCAATCTATCACTTTGTCACCTGTTTTTGTGAAGCCTGATTGTATTTTGTTGATATCTGCTTTTCGTTAGGTTTTTTTAAGATCAAGTAAAATTGTACCATTAAACTGCTTGCATCTCTCATCTGTAGGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCAGTAAGTCAATCTTCACATATTTGAGTTTTGTTCCAATTTTGATTATGGTAGCTATTTTTCCTGTCAGTATTATTTAGATTAAAATACCATTTTGGTCCAACTATTTTGAATTTTGTCCCATTTTTGTCCCTGTTCTTTGGATTGCCCAATTTTAGCCCTTTGTACTTTCAATAAATCTTAAAATTAGTCCTTGTAGTTATTGTCTTGTTGATTGTTCCCACAAAAACATTAGTCTCTATGAGCACATCTTTCATAAATTGTGAAAATATATTATACACAATGTCTTTTCTTGCATGAAAATTATTTTTATTATTTTTCTAATTTTGATAGAGAAATTAACTTCTAAAGACTAAATTGAAGTTTTATTGAATGAAAGCACGTGGACTGAATATAAGATTTATGGACAGTACAGGAACTAAAATTGGACAATTGAAAAGTACAAAGTCCAAAATGGACCAAAATCCAAAGTACAGGGACCAATATAGTATTATACTCTTATACTTGGGAAAACTATACAAAATAGCCCCTGATCTTTTAAGCAATCTTAAATTTGTTCCTTTATTTTTCAAAGTTCTCAATTTTACCGTCAATGTTTTAAAATTCTCAATTAGGTTTTTTGTTTAACATCTTTTTTATGAAAAAAAGAATAACAATATTTAGACTCATGTTGTCACATGAGATCCAACTAGTTTATTGTTAAAATCTGACCCACCACAAGCAAATTCCTTTCTTTCCTAGTGGCACACTCATGTGCCCAAATATGTCGACTAGGCAATAATTTAGTTTGACATAAGATTTGGTAACAAATTTTAACAAAGGGTAACTAGCCCCATCCATGTTCGTTGAAACCTTCTTCCATTTTGTTAAAAAAAATTGTGTGCTTTTACTTAAACAGTAACAGCCTCATTCTCACTGCCCCAGCTTTCTCCTTCGTTTTGATTGATATTTTCTGTTGCACTATGGGGAGTTTATTTTTAAGAAAAGCAGTAATATTGAAATCTATTGTGTCATTAAGATAAGAGTACATCAGTCACTGTATAATCTTTTTTGTTTTGTTACTCGAAGTTTCTAGCTGAAAAGGATAAAGGAAAAAGAAAACCCAAAATCTTAATTAAAATATATTATAGTTTCTTTTGTCAAAATGAGCTTAGCTCAATAGTAATTGACATTTTCTTTCTCATTAGAAGTTTTGATTCCGCATCCTGCCGTTGTACTAATATATATATATATTTCATGCTATGAAAAATTGAGGTTTTGTTTTGCTTGTATTTGATGATTGAAGTAACTTTTAAAATTTGAACTCCAAGATTCAAATTAAAGGTAAGGCACTCAATTGAGGGGAAAATAGTTAACCGTTCTGTTTGAATTAGGTTTAGTTAATAAAATTTGATGCTTCTACACAATAGTCAAAGTTCCATAAGCAAGCATATGGACTAAGATTATTCACTTCTTTAGATTGGTTGTGTTAGGAAATGATTGATAAATTTCTTTTTAACTCATTTTGGATCGCTTCTTCCTTTTCTTCTTTCCATATATGAACATAAGAACTAAAAAACACTCCTGGATTTGATAATCAATACTTTCAACTTGTAAAATAGTTGGACACTGGACAGTATAATACTCTCAAACATGATTATGAACTGCGCTAGGTTCCAAGTATCTGCTAAGTCTATAGATCTTTATTTCCTGCTATCCTCCAAGTAGTTTATTGATCCTTTAAATGTTATCCATTTCCGTTTTTTCCATTCAGTGAAAAAGGATTTTGAACTGGCACGTCGGTTAGGAGGGAAAGGGAGGCCATGGTGAGAAGAGATGTTCGTTAGAAAGAGTAGCCGATTTAGCAACCCAATACCTCATTAATCGGCATCATAGAATTGCAGTTGTTGATTGCTAGTAAAGTAGTATATTTGAATGCGTAAAAATTAGGTAGTACACAAGACCAAAAAAATTTGTTGCCGAGAACCGTTTATGCCACAGCCTCCAAAGTTCCAATCCCCCATCCATATCAAATTTGACTCGAGATACGAAGTTTATGTTAGCTGTTTTAAAGAAGATTGTAGGATCGATTCAGCTTTGATGTGGCCATTGATTCTGACTCTTGCGGTGCTTTTTGTAATCTGTAACTTTGTTGCATTTTGTTATTAGAATACAACTTTCTTGTGGCAGGTCTGTCAAAAAAGAAGACACCATTTGGTCAGCCCAATCTCTTTACTATTGTGTGCGTTTGTAGGGGTAACGTTCATTTTGTCTGTCTCTTTACTATTGTAAGTTGTAACATTTGGTGTTCGTATTTTTGTAAATGATGGTTGATTTTTGTACTATTAAAATCTTTACCATTAAGTTTCATGTGTTAAAAATCTTGTGATATCTAGGTCTAGCTTGATTTT

mRNA sequence

ATTTTGTTAGTTCTATTTGCTATCACTTTTTACGAAATAAAATAGCGGGAAGTTCCGAAGTTTTGTTTTGGTGAGTTCACTGTCTTTGAAATCACCAATTTTTGCCCAAAATTGAAACATTGAGCTCCATTCTCATTCTCCCTAAACCCCTCTCACACCACTGCCTTCAACTCCGAATCAATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAACGCAAAATGTCAGGGAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCATGGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAGGAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCATGAAAAAGGATTTTGAACTGGCACGTCGGTTAGGAGGGAAAGGGAGGCCATGGTGAGAAGAGATGTTCGTTAGAAAGAGTAGCCGATTTAGCAACCCAATACCTCATTAATCGGCATCATAGAATTGCAGTTGTTGATTGCTAGTAAAGTAGTATATTTGAATGCGTAAAAATTAGGTAGTACACAAGACCAAAAAAATTTGTTGCCGAGAACCGTTTATGCCACAGCCTCCAAAGTTCCAATCCCCCATCCATATCAAATTTGACTCGAGATACGAAGTTTATGTTAGCTGTTTTAAAGAAGATTGTAGGATCGATTCAGCTTTGATGTGGCCATTGATTCTGACTCTTGCGGTGCTTTTTGTAATCTGTAACTTTGTTGCATTTTGTTATTAGAATACAACTTTCTTGTGGCAGGTCTGTCAAAAAAGAAGACACCATTTGGTCAGCCCAATCTCTTTACTATTGTGTGCGTTTGTAGGGGTAACGTTCATTTTGTCTGTCTCTTTACTATTGTAAGTTGTAACATTTGGTGTTCGTATTTTTGTAAATGATGGTTGATTTTTGTACTATTAAAATCTTTACCATTAAGTTTCATGTGTTAAAAATCTTGTGATATCTAGGTCTAGCTTGATTTT

Coding sequence (CDS)

ATGGCGCGAGCCAGGCATCCACCCCGAAGAAAGTCCAATCGCACGCCATCAGGTTCTGGAGCTGCACAGTCTTCCCCAACTGCCCCTTCGACGCCACTTAATGGGAGAACGCAAAATGTCAGGGAAGCTCAAAACTCATCGTCAAGAACAATAAAGAAAAAAAAACGCTTCAGACCAGGGACAGTGGCATTAAAAGAAATTCGGAATCTCCAGAAATCATGGAATCTGCTAATTCCAGCTAGCTGTTTCATTCGAGCAGTGAAAGAAGTAAGCAACCAGTTGGCTCCACAGATTACGCGTTGGCAAGCTGAAGCTTTAGTAGCTCTTCAGGAAGCAGCAGAAGATTTTTTGGTTCACCTATTTGAAGATACCATGCTGTGTGCTATTCATGCCAAACGTGTAACTATCATGAAAAAGGATTTTGAACTGGCACGTCGGTTAGGAGGGAAAGGGAGGCCATGGTGA

Protein sequence

MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW*
Homology
[Close]
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match: Q8RVQ9 (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana OX=3702 GN=HTR12 PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 9.2e-38
Identity = 86/140 (61.43%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 18  GSGAAQSSPTAPST-PLNGRTQNVREAQNSSSRTIKKKK-RFRPGTVALKEIRNLQKSWN 77
           G G   +  T P+T P  G  +  + ++ +  R  +KK  R+RPGTVALKEIR+ QK  N
Sbjct: 39  GEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTN 98

Query: 78  LLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRV 137
           LLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED+LV LF D+MLCAIHA+RV
Sbjct: 99  LLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRV 158

Query: 138 TIMKKDFELARRLGGKGRPW 155
           T+M+KDFELARRLGGKGRPW
Sbjct: 159 TLMRKDFELARRLGGKGRPW 178

[Close]
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match: Q7RXR3 (Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=hH3v PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-27
Identity = 72/146 (49.32%), Postives = 97/146 (66.44%), Query Frame = 0 

Query: 7   PPRRKS-NRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPGTVALK 66
           PP++    ++ + S  A + PT  +TP   R       Q        KK+R+RPGT+ALK
Sbjct: 2   PPKKGGVTKSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKRRYRPGTLALK 61

Query: 67  EIRNLQKSWNLLIPASCFIRAVKEVSNQLAP--QITRWQAEALVALQEAAEDFLVHLFED 126
           EIRN Q++ +LL+    F R V+E++ Q  P  +  RWQ++A++ALQEAAE FLVHLFED
Sbjct: 62  EIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFED 121

Query: 127 TMLCAIHAKRVTIMKKDFELARRLGG 150
           T LCAIHAKRVTIM+KD +LARR+ G
Sbjct: 122 TNLCAIHAKRVTIMQKDIQLARRIRG 147

[Close]
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match: Q9Y812 (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnp1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 53  KKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQIT-----RWQAEALV 112
           +KKR+RPGT AL+EIR  Q+S +LLI    F R V+E+S++     +     RWQ+ AL 
Sbjct: 18  RKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQ 77

Query: 113 ALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGG 150
            LQEAAE FLVHLFEDT LCAIHAKRVTIM++D +LARR+ G
Sbjct: 78  CLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119

[Close]
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match: Q59LN9 (Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CSE4 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 0 

Query: 30  STPLNGRTQNVREAQNSSSRTIKK-KKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVK 89
           ++ L  RT   R   N   RT+ + KKR+RPGT AL+EIR  QKS +LLI    F R V+
Sbjct: 87  ASSLPRRTTTTRPEVN---RTVPRVKKRYRPGTKALREIRQYQKSTDLLIRKLPFARLVR 146

Query: 90  EVS-NQLAPQI-TRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARR 149
           E+S + + P    RWQ+ A++ALQEA+E FL+HL EDT LCAIHAKRVTIM+KD +LARR
Sbjct: 147 EISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARR 206

Query: 150 LGGKGRPW 155
           +  +G+ W
Sbjct: 207 I--RGQSW 209

[Close]
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match: Q6LCW8 (Histone H3 type 2 OS=Chlamydomonas reinhardtii OX=3055 GN=ch3-II PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.4e-23
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 0 

Query: 51  IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQ 110
           +KK  R+RPGTVAL+EIR  QKS  LLI    F R V+E++      + R+Q++A++ALQ
Sbjct: 35  VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL-RFQSQAVLALQ 94

Query: 111 EAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
           EAAE +LV LFEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 95  EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 133

[Close]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match: A0A0A0K4F4 (Histone H3.2 OS=Cucumis sativus OX=3659 GN=Csa_7G328280 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.1e-65
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVR+AQNSSSRTIKKKKRFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTI 137
           FEDTMLCAIHAKRVTI
Sbjct: 121 FEDTMLCAIHAKRVTI 136

[Close]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match: A0A6J1DTT5 (Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111023426 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 127/154 (82.47%), Postives = 137/154 (88.96%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVR+AQ+  +RT  KK+RFRPG
Sbjct: 1   MARARHPAQRNANRKPLGSGVAPSSPAGPSTPLGGRTQNVRQAQSPPARTSGKKRRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match: A0A6J1KTZ4 (Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111498182 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 126/154 (81.82%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ R+ Q+  SRT  KK+RFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match: A0A6J1H6R9 (Histone H3.2 OS=Cucurbita moschata OX=3662 GN=LOC111460630 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 126/154 (81.82%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ R+ Q+  SRT  KK+RFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match: A0A1S3CG56 (Histone H3.2 OS=Cucumis melo OX=3656 GN=LOC103500538 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.3e-50
Identity = 109/133 (81.95%), Postives = 114/133 (85.71%), Query Frame = 0 

Query: 24  SSPTAPSTPLNGRTQNVREAQNSSSRTIKKKK--RFRPGTVALKEIRNLQKSWNLLIPAS 83
           S   +PS P +       + Q SS  TIK K+  RFRPGTVAL+EIRNLQKSWNLLIPAS
Sbjct: 66  SCTVSPSCPFDATQWENTKCQESSKPTIKNKEKIRFRPGTVALREIRNLQKSWNLLIPAS 125

Query: 84  CFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDF 143
           CFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDF
Sbjct: 126 CFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDF 185

Query: 144 ELARRLGGKGRPW 155
           ELARRLGGKGRPW
Sbjct: 186 ELARRLGGKGRPW 198

[Close]
BLAST of CSPI07G13500 vs. NCBI nr
Match: XP_011659153.1 (histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus] >KAE8646217.1 hypothetical protein Csa_016289 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVR+AQNSSSRTIKKKKRFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. NCBI nr
Match: XP_038896752.1 (histone H3-like centromeric protein HTR12 [Benincasa hispida])

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHPP+RKSNR PSG+GAAQSSP APSTPL+GRTQNV +AQ+S  RT KKKKRFRPG
Sbjct: 1   MARARHPPQRKSNRMPSGTGAAQSSPAAPSTPLSGRTQNVEQAQSSPLRTTKKKKRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR+LQKSWNLLIPASCFIRAVKEVS QLAPQITRWQAEALVALQEAAEDFLVHL
Sbjct: 61  TVALREIRSLQKSWNLLIPASCFIRAVKEVSYQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. NCBI nr
Match: XP_011659152.1 (histone H3-1 isoform X1 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 8.5e-65
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVR+AQNSSSRTIKKKKRFRPG
Sbjct: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVRQAQNSSSRTIKKKKRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL
Sbjct: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTI 137
           FEDTMLCAIHAKRVTI
Sbjct: 121 FEDTMLCAIHAKRVTI 136

[Close]
BLAST of CSPI07G13500 vs. NCBI nr
Match: XP_022156549.1 (histone H3-like centromeric protein HTR12 [Momordica charantia])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 127/154 (82.47%), Postives = 137/154 (88.96%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARARHP +R +NR P GSG A SSP  PSTPL GRTQNVR+AQ+  +RT  KK+RFRPG
Sbjct: 1   MARARHPAQRNANRKPLGSGVAPSSPAGPSTPLGGRTQNVRQAQSPPARTSGKKRRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. NCBI nr
Match: XP_022959605.1 (histone H3-like centromeric protein HTR12 [Cucurbita moschata] >XP_023005091.1 histone H3-like centromeric protein HTR12 [Cucurbita maxima] >XP_023514272.1 histone H3-like centromeric protein HTR12 [Cucurbita pepo subsp. pepo] >KAG6592914.1 histone H3-like centromeric protein HTR12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.5 bits (615), Expect = 4.8e-60
Identity = 126/154 (81.82%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MARARHPPRRKSNRTPSGSGAAQSSPTAPSTPLNGRTQNVREAQNSSSRTIKKKKRFRPG 60
           MARA+HP +R SNR PS +GA+ SS  APSTPL+GRTQ+ R+ Q+  SRT  KK+RFRPG
Sbjct: 1   MARAKHPTQRNSNRKPSVAGASPSSSAAPSTPLSGRTQSGRQTQSPLSRTTGKKRRFRPG 60

Query: 61  TVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQITRWQAEALVALQEAAEDFLVHL 120
           TVAL+EIR LQKSWNLLIPAS FIRAVKEVS QLAPQ+TRWQAEAL+ALQEAAEDFLVHL
Sbjct: 61  TVALREIRQLQKSWNLLIPASNFIRAVKEVSYQLAPQVTRWQAEALIALQEAAEDFLVHL 120

Query: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 155
           FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW
Sbjct: 121 FEDTMLCAIHAKRVTIMKKDFELARRLGGKGRPW 154

[Close]
BLAST of CSPI07G13500 vs. TAIR 10
Match: AT1G01370.1 (Histone superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-39
Identity = 86/140 (61.43%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 18  GSGAAQSSPTAPST-PLNGRTQNVREAQNSSSRTIKKKK-RFRPGTVALKEIRNLQKSWN 77
           G G   +  T P+T P  G  +  + ++ +  R  +KK  R+RPGTVALKEIR+ QK  N
Sbjct: 39  GEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTN 98

Query: 78  LLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRV 137
           LLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED+LV LF D+MLCAIHA+RV
Sbjct: 99  LLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRV 158

Query: 138 TIMKKDFELARRLGGKGRPW 155
           T+M+KDFELARRLGGKGRPW
Sbjct: 159 TLMRKDFELARRLGGKGRPW 178

[Close]
BLAST of CSPI07G13500 vs. TAIR 10
Match: AT1G01370.2 (Histone superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-39
Identity = 86/140 (61.43%), Postives = 106/140 (75.71%), Query Frame = 0 

Query: 18  GSGAAQSSPTAPST-PLNGRTQNVREAQNSSSRTIKKKK-RFRPGTVALKEIRNLQKSWN 77
           G G   +  T P+T P  G  +  + ++ +  R  +KK  R+RPGTVALKEIR+ QK  N
Sbjct: 39  GEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIRHFQKQTN 98

Query: 78  LLIPASCFIRAVKEVSNQLA-PQITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRV 137
           LLIPA+ FIR V+ +++ LA PQI RW AEALVALQEAAED+LV LF D+MLCAIHA+RV
Sbjct: 99  LLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRV 158

Query: 138 TIMKKDFELARRLGGKGRPW 155
           T+M+KDFELARRLGGKGRPW
Sbjct: 159 TLMRKDFELARRLGGKGRPW 178

[Close]
BLAST of CSPI07G13500 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 0 

Query: 41  REAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQI 100
           + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      +
Sbjct: 24  KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 83

Query: 101 TRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
            R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 84  -RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

[Close]
BLAST of CSPI07G13500 vs. TAIR 10
Match: AT1G19890.1 (male-gamete-specific histone H3 )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 0 

Query: 37  TQNVREAQNSSSRTIKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAP 96
           T+  R+ +      +K+  RFRPGTVAL+EIR  QKS +LLI    F R V+E++     
Sbjct: 23  TKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKV 82

Query: 97  QITRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
            + R+Q+ A++ALQEAAE +LV LFEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 83  DL-RFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGE 135

[Close]
BLAST of CSPI07G13500 vs. TAIR 10
Match: AT3G27360.1 (Histone superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 0 

Query: 41  REAQNSSSRT--IKKKKRFRPGTVALKEIRNLQKSWNLLIPASCFIRAVKEVSNQLAPQI 100
           + A+ S+  T  +KK  RFRPGTVAL+EIR  QKS  LLI    F R V+E++      +
Sbjct: 24  KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL 83

Query: 101 TRWQAEALVALQEAAEDFLVHLFEDTMLCAIHAKRVTIMKKDFELARRLGGK 151
            R+Q+ A+ ALQEAAE +LV LFEDT LCAIHAKRVTIM KD +LARR+ G+
Sbjct: 84  -RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134

The following BLAST results are available for this feature:
BLAST of CSPI07G13500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RVQ99.2e-3861.43Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana OX=3702 GN=HTR... [more]
Q7RXR37.3e-2749.32Histone H3-like centromeric protein hH3v OS=Neurospora crassa (strain ATCC 24698... [more]
Q9Y8121.5e-2458.82Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe (strain 97... [more]
Q59LN91.3e-2353.13Histone H3-like centromeric protein CSE4 OS=Candida albicans (strain SC5314 / AT... [more]
Q6LCW86.4e-2359.00Histone H3 type 2 OS=Chlamydomonas reinhardtii OX=3055 GN=ch3-II PE=1 SV=1[more]
BLAST of CSPI07G13500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4F44.1e-6599.26Histone H3.2 OS=Cucumis sativus OX=3659 GN=Csa_7G328280 PE=3 SV=1[more]
A0A6J1DTT55.5e-6282.47Histone H3.2 OS=Momordica charantia OX=3673 GN=LOC111023426 PE=3 SV=1[more]
A0A6J1KTZ42.3e-6081.82Histone H3.2 OS=Cucurbita maxima OX=3661 GN=LOC111498182 PE=3 SV=1[more]
A0A6J1H6R92.3e-6081.82Histone H3.2 OS=Cucurbita moschata OX=3662 GN=LOC111460630 PE=3 SV=1[more]
A0A1S3CG568.3e-5081.95Histone H3.2 OS=Cucumis melo OX=3656 GN=LOC103500538 PE=3 SV=1[more]
BLAST of CSPI07G13500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659153.11.3e-7699.35histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus] >KAE86462... [more]
XP_038896752.14.3e-6990.91histone H3-like centromeric protein HTR12 [Benincasa hispida][more]
XP_011659152.18.5e-6599.26histone H3-1 isoform X1 [Cucumis sativus][more]
XP_022156549.11.1e-6182.47histone H3-like centromeric protein HTR12 [Momordica charantia][more]
XP_022959605.14.8e-6081.82histone H3-like centromeric protein HTR12 [Cucurbita moschata] >XP_023005091.1 h... [more]
BLAST of CSPI07G13500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G01370.16.5e-3961.43Histone superfamily protein [more]
AT1G01370.26.5e-3961.43Histone superfamily protein [more]
AT1G09200.11.0e-2356.25Histone superfamily protein [more]
AT1G19890.11.0e-2353.51male-gamete-specific histone H3 [more]
AT3G27360.11.0e-2356.25Histone superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 96..114
score: 48.51
coord: 114..130
score: 75.45
coord: 9..23
score: 31.59
coord: 130..151
score: 66.4
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 49..152
e-value: 4.8E-44
score: 162.3
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 10..154
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 29..147
e-value: 4.0E-37
score: 127.5
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 3..151
e-value: 4.5E-45
score: 154.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 26..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..46
NoneNo IPR availablePANTHERPTHR11426:SF223HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12coord: 10..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13500.1CSPI07G13500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity