CSPI07G13380 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G13380
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
LocationChr7: 11836996 .. 11837328 (-)
RNA-Seq ExpressionCSPI07G13380
SyntenyCSPI07G13380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGCTGTGACCGGCAAGGACACCTCTGACAAGGGAAAGGATGTTGTGCCTGATGAAGAGGAGATCCCATCCCTATACACCTCGGCTGCTCGTTTGATGGTTGTCGAAGAAAGTGTGGTAAATCTCAACGATTGAATGGGAAATCTTCAAACCATCGTTGAATGACTTTCTCGCTAGCTTGAAGTACGCGTTAACTGCCCTTTCCAAACAACAGAAACTACTAAGAAGTTCGGCCCATCGACGACCGAATTTTTGGCCAATTATGCCACGAAGAACGTCAAGATTTTTTTCCGAGATTGGGGGCAACGAGGCATTCAAGATACATAA

mRNA sequence

ATGAAGGAAGCTGTGACCGGCAAGGACACCTCTGACAAGGGAAAGGATGTTGTGCCTGATGAAGAGGAGATCCCATCCCTATACACCTCGGCTGCTCGTTTGATGGTTGTCGAAGAAAGTGTGCTTGAAGTACGCGTTAACTGCCCTTTCCAAACAACAGAAACTACTAAGAAGTTCGGCCCATCGACGACCGAATTTTTGGCCAATTATGCCACGAAGAACGTCAAGATTTTTTTCCGAGATTGGGGGCAACGAGGCATTCAAGATACATAA

Coding sequence (CDS)

ATGAAGGAAGCTGTGACCGGCAAGGACACCTCTGACAAGGGAAAGGATGTTGTGCCTGATGAAGAGGAGATCCCATCCCTATACACCTCGGCTGCTCGTTTGATGGTTGTCGAAGAAAGTGTGCTTGAAGTACGCGTTAACTGCCCTTTCCAAACAACAGAAACTACTAAGAAGTTCGGCCCATCGACGACCGAATTTTTGGCCAATTATGCCACGAAGAACGTCAAGATTTTTTTCCGAGATTGGGGGCAACGAGGCATTCAAGATACATAA

Protein sequence

MKEAVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEVRVNCPFQTTETTKKFGPSTTEFLANYATKNVKIFFRDWGQRGIQDT*
Homology
[Close]
BLAST of CSPI07G13380 vs. ExPASy TrEMBL
Match: A0A5A7ULZ0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00250 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-05
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 4  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV 45
          AVT K+TSDKGKDVV  E+EIPS  TSAARLMVVEES +E+
Sbjct: 5  AVTSKNTSDKGKDVVLTEKEIPSPRTSAARLMVVEESTVEI 45

[Close]
BLAST of CSPI07G13380 vs. NCBI nr
Match: KAA0054551.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-05
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 4  AVTGKDTSDKGKDVVPDEEEIPSLYTSAARLMVVEESVLEV 45
          AVT K+TSDKGKDVV  E+EIPS  TSAARLMVVEES +E+
Sbjct: 5  AVTSKNTSDKGKDVVLTEKEIPSPRTSAARLMVVEESTVEI 45

The following BLAST results are available for this feature:
BLAST of CSPI07G13380 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G13380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7ULZ03.7e-0575.61Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold51... [more]
BLAST of CSPI07G13380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054551.17.5e-0575.61reverse transcriptase [Cucumis melo var. makuwa] >TYK20400.1 reverse transcripta... [more]
BLAST of CSPI07G13380 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G13380.1CSPI07G13380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity