CSPI07G12690 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G12690
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr7: 10971472 .. 10976150 (-)
RNA-Seq ExpressionCSPI07G12690
SyntenyCSPI07G12690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGTGGAGTCCTTTTTAGGCATCTTTTGGTGGGAAAGTTCTATTTTTCCGAGCATGTCAACTCTGGTTGCTGCATTGTAAAGTCATATCAACTCCAATTAGCTACCATTCTTATCTTCTAGTGAACCTTCCCCATGTGATAACATGGTTTCTCGTCGAGAAATTGTATGGAGTTCTGATCGCATAACGCTTGCGCAAGCTCTTCTATGATTCACTGGTTCCTTCCTTCTTATTAATCCTATGTTGAGACACTGAAAATGGGGTAAAAGCAGACATCAGGAGTTATGTAAAGTATATTTCCAAGTATTTATGCAATTTCAATACAAATTACGTGTTTTGATATACTTCTTCTTAATTTGGCCTCGTTATTCTAATAAAAGAATCTATAATAACGTGTATTTCTACATGTTATCAATTAGTGTTATGGAAATTATCAATGTTGAAGAGATGGTCGCTATGTTCCTGCACATACTAGTGCACAACATCAAGAACCGAGTGATCCAAAGGGAGTTTGTGCAGTTTGGTGAGATAATTTTGCAATATTTCAAGAAAAGTAAGATTTATGGAATGAAACTATTGAGATTTATGTCCTAAAACTCGTAGATGGTAAATATAATTCATTGAACGTTATTTATTAATAAAATGTTATTATATTATTATTATTTCAATAAGCGTTATTGATCATATTATTAGCCTTGTCTTAATAACCTAAATCCAACAAACTAATATCTTAAGCTGTTTGATGAGTTTTGAACAGTATATAAAGACATACATGGATAAATGTTCGAGATCAACTTAAAGGATCTATAATATAGGGATAAGGTTGGGTACCTTATCTTAGTAACACTATAGATACGACCCACTTTGTATTTGATACAAACGCAATGATCCAAGGTGTTCGTATAGGTGACGTGCGAGTGAGGGTATCTTATACAGTGAGTTTGCATAGGACCGGACCACAAAATAGTAACCACTAGATGTAACTCTGTTAACTAGTTAGGTTTCTATTTAATTAGGATGATCTAGGTAACTTAGTCTTAATCATAAGTGTATTAGAAACTCCTGTTCGAAGGAATTGTCCTTTGATTTGTACGGATGAAAGTGGCCAAATTGCTTGTACGGGTGAAAATGGCAAAATTGCTGACTCAATATACTTATCATTTTGGGGACAAGACCGATTGAGAACCTAAAAACATAATCACACAAGATAAAATTCACTCATTCCTGACTTTAGATGAGTATTCCCTTAAATGGTAAGTAGATGAGTATTTCCTTAAATGGTGTATCCAGGACTTAACAAACGACCCTACCCTCTATATAGCACGATAAAGGTTTCTGTTTATTGGTTTGACACAAACAAGTTGTTCATTAGAGGAACACTGGTATTTAAGGACTAGAAGTAACCTAGAGGTAAAACAATAATTTGACCAAAGTGGTGTTATGAACATGCGTGAATGACTAACTTACTATTACTAGTCTATATCCGTGGACACAAAAATATATCTACAGTGAGAAGAATTGAATTGTAAGTATTTAATGGAGTATACACATAATTAATGAACATATTAATGTGGTTAATGAGTCTAGTCAATTAATCTCATATAGTTGTAGTTTCTAATTTTTAGGTTCATTAGATCATCTTCCTAACTCGTAAAGGGTAATGAGATTTTTTATATTGGTTGTAATTTGAAATGTTCAAATTTATTTTGAAAATTAGTATAATGAGTTTATATTTTAATTAAACTTTTAAATTTAATTTTGGATATGCTTTATTATATAAATTAAATTATATAAATTAAATTTTGGATATGATTCAAAATTAATTTATGAGAGATGAAATATTTGAATGAGTTCAAATATTAATTTAACGTGAATTTGATTCATATTAAAACTATAGGTTAAAGTATATGATACACATTAAAACTATATGTTATGGAAAATTTTATATTTGAATATGATTCAAATTTGAAATAAACAAATTTAAGATATTTAATTTAGTAATTAATTAATTAATAGTTTAGTTTAATTTTATTTAATTAAATTTGATTAAATTAAAACTGTGAGATATGTGAGAGATATTAATTAAATATAATTTATTTGGATATTAATTTAACATTTTTTTAATTTAATAGAATCTCATGTATTGGATCTACATTATAAATTAAAAAGAAATTATTATAATACTACTATCATAATCTTTTCCCTAAATGCATACTATCATAACACTACCAATCATAATTTTTTCCCCAAACACATACTATTATAACACTATCTATCATAATTCTTTCCTCAAACACATACGATAACACTACACTATTATAATATTAAGATTATCATAACACCAACTCAATCATAGATCACTCATTCCTCCAAACATCCCTTCATGTTTTACAAAACCCACAAAATGCTACTATTAGATGAATTACATGTATCTTTCTTCGAGACACGTGATAAAAATGTTGAATGCAGAGGAAAATAACGAATAACAATGTAATGGAATTGGAATTAGAAGTAAATAACACTTCAATGAATGGATATCTATTATACTAATATTTATAAAATATAACATAATTTATATTCAATTAATGATCAATCTTATTTTTTTTTTAATAGTATGTTTTTTCTTGGGCTAAGTTGGCCTAATTACATGTGTATAGAACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGTAAGCCATCTATTTTCTCTCTTTCTTGTTTATCTCATTTCATGATTGTTTTCATTTTCCGGTAGGCCTTCGATTTTTCCTTTCTTTCTATCATTTTTTTTGTTACTGATATGATCGATTTCAAGTTAAATGAAAACTAATCTTCAGGATCCGTTTTTGATGGACTTTTGTAGTTTCCTTGCTGTGTCGTTCAGATCTGTGGATTTGGTTGGGATGTTTTTTTTTCTTGCATCTTGTAATTGTCTGAAATGAAGAATATGATGGTTGCTTTAAGTTTAATGTGTGTTTACATGAAGCAGATGACAAAGTTGAAGGATTACTGTGTTCCATTTTGTTATATTTCTCATCTAGTATTATCTGTAGAACCCTGAAATGTTTGCTATGTCCGTTTTGTTTACATGTCTGTTATTTTTTGTATTTGCTTACGACATATTATAGTTTTCGATTATTTATTAGTTTTTATAGGATTGCAATCTTGATAAAATAGTGGTGTTTCTGCCCTCGTCTCAATACTCAAATTAGTAATTATTTTTATTGTATGAGTATGAGTTGATTAAATTCTCTTTATTTTAAAGGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTAGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGCAATCAGGTTTTGTTACTTTATTAGCTGGCAATTTAGAATTACTTTACCTTATGTATTACACTTCTTTCCTATGGTCTTAACTTGCAACAATCTTTCTCAAGTTCATAATAGATTTCTAGGATTTTCTCCAACAATCTTAAATAAATAGACAATTAAATTGTAAATCAAAGTATAGGTAAACTAAAAGAAATTGTCACAGAACAACAAAGGTTTATCATAAAACGTAGTCTATGCACACCAGACGATGAAGCTTGAACATTCTGACAAATGCTTCTAAGCTTGAACATTGAACATTGTATAGGGCACCACTAAGAAGGAGTGTGTGTGTGTGCATATATATATATACATGAAAACATAGGTTTGTTGAAATGTATTTCTCCAACTTGCAACAAGGAAATTTAAACTATGGACTTGAAGAGGTTGTAAGCTTTTACACCAATAATAAACATGGTAGATAACTAACTCAAGAAAATCCCCAGCAGTTATTTCTTTGTCATGAAAAACTATGTTGTATCTGATCTCAAATCTTCCATAAAATTGCTCTGATCAAAATAGACTGTAGATGCTCCTTAATAGTTTTGAAAGGGTGATCAACGAACAACATTTTGATCCAATCAACAGTGTCCAAAGAGGGGGCAAGAAGAGAGATGGTCACCCCAAATTGCAGCTGAAATTTGATAGTGGAATGAAACATGGTTTTGTGCTTTGGTGCTTCTTTTGCAAAGGTAGCACGAAAATGGAGAAATGTAGAGCCAAGGGCATTTTTTGTTTTCCATTGTGTTTAGGCAAGAATGGATAGTTTTTATAAGAAAGGAACATAATTCTTTCAGGAAAGAAAGCTTCTATAGTTGTTTATAAAGATCCGATGATGTGGGGGCACTCAGATTGAGATGAGAAACCAAAGAGTTTATAGTAAGATGCTATTGGTTTGCGTGAAAGAAACCCATCTTGTAATCTCCTCATCTTTAGATTCTATCTAATGTTTAGAATACAAGAGCTGTTTCCACGATTCTAAGCCTTTTTGATGGATTTTTTTAGTCTCAGCACTGGTATAAAGTTTTGGATAACTTCTACTGAGGGTACCATCCCCAATCCAGTGGGCATTCTAGAAAGCGGTAGTTTTTCCTTCTCCAACCAAGCAATGGATGTGGCTGTAAAAGAGGCACGTTTGGTTGAGAAGGTCTACAAGCGATTCTTGAAGAAACTTCGCACTTCTTGGATGGCTTTTGATCAAAATTTTGCAAACCATATT

mRNA sequence

ATGGTGGAGGTGGAGTCCTTTTTAGGCATCTTTTGGTGGGAAAGTTCTATTTTTCCGAGCATGTCAACTCTGGTTGCTGCATTAACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTAGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGCAATCAGTGTCCAAAGAGGGGGCAAGAAGAGAGATGGTCACCCCAAATTGCAGCTGAAATTTGATAGTGGAATGAAACATGGTTTTGTGCTTTGTCTCAGCACTGGTATAAAGTTTTGGATAACTTCTACTGAGGGTACCATCCCCAATCCAGTGGGCATTCTAGAAAGCGGTAGTTTTTCCTTCTCCAACCAAGCAATGGATGTGGCTGTAAAAGAGGCACGTTTGGTTGAGAAGGTCTACAAGCGATTCTTGAAGAAACTTCGCACTTCTTGGATGGCTTTTGATCAAAATTTTGCAAACCATATT

Coding sequence (CDS)

ATGGTGGAGGTGGAGTCCTTTTTAGGCATCTTTTGGTGGGAAAGTTCTATTTTTCCGAGCATGTCAACTCTGGTTGCTGCATTAACAGAAGGTTTTCTCTGCTCGTCTTCCTTCGATCTTCGTCACCGCGAAAGCAAGAGGGATCACCCTGAACTGTTGGTTGAGCAAATTACCGAAAAGGGGGAACTAACTGTGAGCAGAGAAAATGTCTTTAGCCAATGGATTGAAGTCATGTGCAAAGCTGCTGAAGTCTTCAGAACCATTGTTGGAGCAATCAGTGTCCAAAGAGGGGGCAAGAAGAGAGATGGTCACCCCAAATTGCAGCTGAAATTTGATAGTGGAATGAAACATGGTTTTGTGCTTTGTCTCAGCACTGGTATAAAGTTTTGGATAACTTCTACTGAGGGTACCATCCCCAATCCAGTGGGCATTCTAGAAAGCGGTAGTTTTTCCTTCTCCAACCAAGCAATGGATGTGGCTGTAAAAGAGGCACGTTTGGTTGAGAAGGTCTACAAGCGATTCTTGAAGAAACTTCGCACTTCTTGGATGGCTTTTGATCAAAATTTTGCAAACCATATT

Protein sequence

MVEVESFLGIFWWESSIFPSMSTLVAALTEGFLCSSSFDLRHRESKRDHPELLVEQITEKGELTVSRENVFSQWIEVMCKAAEVFRTIVGAISVQRGGKKRDGHPKLQLKFDSGMKHGFVLCLSTGIKFWITSTEGTIPNPVGILESGSFSFSNQAMDVAVKEARLVEKVYKRFLKKLRTSWMAFDQNFANHI
Homology
[Close]
BLAST of CSPI07G12690 vs. ExPASy TrEMBL
Match: A0A0A0K461 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304370 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-12
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 51 ELLVEQITEKGELTVSRENVFSQWIEVMCKAAEVFRTIVGAI 93
          ELLVEQITEKGELTVSRENVF QWIEVMCKAAEVFRTIVG I
Sbjct: 27 ELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTIVGEI 68

[Close]
BLAST of CSPI07G12690 vs. NCBI nr
Match: KGN44739.2 (hypothetical protein Csa_016351, partial [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-25
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 29 TEGFLCSSSFDLRHRESKRDHPELLVEQITEKGELTVSRENVFSQWIEVMCKAAEVFRTI 88
          TEGFLCSSSFDLRHRESKRDHPELLVEQITEKGELTVSRENVF QWIEVMCKAAEVFRTI
Sbjct: 1  TEGFLCSSSFDLRHRESKRDHPELLVEQITEKGELTVSRENVFGQWIEVMCKAAEVFRTI 60

Query: 89 VGAI 93
          VG I
Sbjct: 61 VGEI 64

The following BLAST results are available for this feature:
BLAST of CSPI07G12690 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G12690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4616.5e-1295.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G304370 PE=4 SV=1[more]
BLAST of CSPI07G12690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44739.21.3e-2596.88hypothetical protein Csa_016351, partial [Cucumis sativus][more]
BLAST of CSPI07G12690 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12690.1CSPI07G12690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003723 RNA binding