CSPI07G12420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CDT1-like protein b
Location	Chr7: 10697157 .. 10697594 (+)
RNA-Seq Expression	CSPI07G12420
Synteny	CSPI07G12420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCAAACAATTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCCTTAATCACCAATTTTCCTTCTATCACTTCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

mRNA sequence

CACCCAAACAATTTCCCCTTTATTCCCGCCAAATCCATTCCATTTGTAAACCCCCTTAATCACCAATTTTCCTTCTATCACTTCATAACAATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

Coding sequence (CDS)

ATGGCGGACGCTTCAAACGAAGTTTCTTCTTCATCATCATCAACTTTACCCTTCAAATCGAACAAACCTTTGCGTTCCAACTCCAAATCTTTACTTCAGGATCCACAATCCTTGAGCTCCAAGACCCCGGAAAAGCCTGCGAAGCTCTCTACCAGAACTAGAAACTGTAAGGTTTCACTTTCGATCAAAGCGATTAAACGAGCTACTCAGAGTGTCCCTGAATCCAATCCTCTGTTGCCTCTTGATTTGCCTACTGAAGAGAGTAAATCGGTTAGAAGACAAATAGATTTGTTGTCGAATGAAAGTCAATCGGTTGATAATAAGTCCAAGAAATTGCCTGAGAAGTAA

Protein sequence

MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK*

Homology

[Close]

BLAST of CSPI07G12420 vs. ExPASy TrEMBL
Match: A0A5D3DKW1 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00410 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MADASNEV----SSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 60
           MADAS ++    SSSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 61  KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           KV+LSIK +KRA  SV +SN  LPL L  EESKSVRRQIDL SNESQSVDNKSKK PEK
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEK 119

[Close]

BLAST of CSPI07G12420 vs. ExPASy TrEMBL
Match: A0A1S3C211 (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MADASNEV----SSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 60
           MADAS ++    SSSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 61  KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           KV+LSIK +KRA  SV +SN  LPL L  EESKSVRRQIDL SNESQSVDNKSKK PEK
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEK 119

[Close]

BLAST of CSPI07G12420 vs. ExPASy TrEMBL
Match: A0A5A7TNU2 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00640 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.1e-34
Identity = 93/119 (78.15%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MADASNEV----SSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 60
           MADAS ++    SSSSSSTLPFKS KPL SNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLPSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 61  KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           KV+LSIK +KRA  SV +SN  LPL L  EESKSVRRQIDL SNESQSVDNKSKK PEK
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEK 119

[Close]

BLAST of CSPI07G12420 vs. ExPASy TrEMBL
Match: A0A5D3BZJ0 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00950 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+L
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           SIK +K+A +SV ESN  LPLDL TEE KSVRRQID  SNESQSV+NKS+KLPEK
Sbjct: 61  SIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSRKLPEK 115

[Close]

BLAST of CSPI07G12420 vs. ExPASy TrEMBL
Match: A0A1S3CEP6 (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADAS ++SSSSSSTLPFK  KPL SN KSLL+D QSLSSKTPEKPA+LSTR+RN KV+L
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           SIK +K+A +SV ESN  LPLDL TEE KSVRRQID  SNESQSV+NKS+KLPEK
Sbjct: 61  SIKEVKQAAKSVRESNRQLPLDLATEERKSVRRQIDSWSNESQSVENKSRKLPEK 115

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: KAE8646176.1 (hypothetical protein Csa_016825 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 8.3e-49
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 115
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 114

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: XP_031744904.1 (uncharacterized protein LOC105436135 isoform X5 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 8.3e-49
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 115
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 114

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: XP_031744905.1 (uncharacterized protein LOC105436135 isoform X6 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 8.3e-49
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 115
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 114

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: XP_031744903.1 (uncharacterized protein LOC105436135 isoform X4 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 8.3e-49
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60
           MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL
Sbjct: 1   MADASNEVSSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNCKVSL 60

Query: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 115
           SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE
Sbjct: 61  SIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPE 114

[Close]

BLAST of CSPI07G12420 vs. NCBI nr
Match: XP_008455861.1 (PREDICTED: CDT1-like protein b [Cucumis melo] >TYK24234.1 CDT1-like protein b [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.6e-34
Identity = 94/119 (78.99%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MADASNEV----SSSSSSTLPFKSNKPLRSNSKSLLQDPQSLSSKTPEKPAKLSTRTRNC 60
           MADAS ++    SSSSSSTLPFKS KPLRSNSKSLL+DPQSLSSKTPEKPA+LSTRTRN 
Sbjct: 1   MADASKKISSSSSSSSSSTLPFKSKKPLRSNSKSLLEDPQSLSSKTPEKPAELSTRTRNR 60

Query: 61  KVSLSIKAIKRATQSVPESNPLLPLDLPTEESKSVRRQIDLLSNESQSVDNKSKKLPEK 116
           KV+LSIK +KRA  SV +SN  LPL L  EESKSVRRQIDL SNESQSVDNKSKK PEK
Sbjct: 61  KVALSIKEVKRAALSVTQSNRQLPLHLAIEESKSVRRQIDLWSNESQSVDNKSKKFPEK 119

The following BLAST results are available for this feature:

BLAST of CSPI07G12420 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKW1	1.3e-34	78.99	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G0...	[more]
A0A1S3C211	1.3e-34	78.99	CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=3 SV=1	[more]
A0A5A7TNU2	8.1e-34	78.15	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639...	[more]
A0A5D3BZJ0	1.2e-32	76.52	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G...	[more]
A0A1S3CEP6	1.2e-32	76.52	CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1	[more]

BLAST of CSPI07G12420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646176.1	8.3e-49	100.00	hypothetical protein Csa_016825 [Cucumis sativus]	[more]
XP_031744904.1	8.3e-49	100.00	uncharacterized protein LOC105436135 isoform X5 [Cucumis sativus]	[more]
XP_031744905.1	8.3e-49	100.00	uncharacterized protein LOC105436135 isoform X6 [Cucumis sativus]	[more]
XP_031744903.1	8.3e-49	100.00	uncharacterized protein LOC105436135 isoform X4 [Cucumis sativus]	[more]
XP_008455861.1	2.6e-34	78.99	PREDICTED: CDT1-like protein b [Cucumis melo] >TYK24234.1 CDT1-like protein b [C...	[more]

BLAST of CSPI07G12420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12420.1	CSPI07G12420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0071163	DNA replication preinitiation complex assembly
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0070182	DNA polymerase binding