CSPI07G12020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 10260547 .. 10261214 (-)
RNA-Seq Expression	CSPI07G12020
Synteny	CSPI07G12020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCGTAGAAAATAGGAGAGCCAAGTCATTTTGAGCTAGAATGCATCAGGTTCCTTCGGTATCAAAACCTTAGTGGGGAACTCTCGATATTCAACATAAGCCACAATACAATTGCCCGTAGAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGTTCTTTCGATATTAGAACTACGTGAAGAACTTCGACTCTTGACCGAAGCTACATTACTATCGCTCGTAGAAATTAGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

mRNA sequence

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Coding sequence (CDS)

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Protein sequence

MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS*

Homology

[Close]

BLAST of CSPI07G12020 vs. ExPASy TrEMBL
Match: A0A0A0K4I4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279800 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of CSPI07G12020 vs. ExPASy TrEMBL
Match: A0A0A0K4H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of CSPI07G12020 vs. ExPASy TrEMBL
Match: A0A0A0K3X8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 81  ARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSE 140
           A  ++ESQAAL  +A G F I  C+GNSRLL EATL   +E RR +   AR  QV  +SE
Sbjct: 25  AGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISE 84

[Close]

BLAST of CSPI07G12020 vs. NCBI nr
Match: KGN44398.1 (hypothetical protein Csa_015881 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 4.3e-80
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of CSPI07G12020 vs. NCBI nr
Match: KGN44393.1 (hypothetical protein Csa_016831 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of CSPI07G12020 vs. NCBI nr
Match: KGN44400.1 (hypothetical protein Csa_016860 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 81  ARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSE 140
           A  ++ESQAAL  +A G F I  C+GNSRLL EATL   +E RR +   AR  QV  +SE
Sbjct: 25  AGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISE 84

The following BLAST results are available for this feature:

BLAST of CSPI07G12020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4I4	2.1e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279800 PE=4 SV=1	[more]
A0A0A0K4H8	1.5e-09	47.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279750 PE=4 SV=1	[more]
A0A0A0K3X8	3.1e-04	51.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279820 PE=4 SV=1	[more]

BLAST of CSPI07G12020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44398.1	4.3e-80	100.00	hypothetical protein Csa_015881 [Cucumis sativus]	[more]
KGN44393.1	3.0e-09	47.52	hypothetical protein Csa_016831 [Cucumis sativus]	[more]
KGN44400.1	6.5e-04	51.67	hypothetical protein Csa_016860 [Cucumis sativus]	[more]

BLAST of CSPI07G12020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12020.1	CSPI07G12020.1	mRNA