CSPI07G11740 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G11740
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein RADIALIS-like 1
Location	Chr7: 9940519 .. 9941241 (-)
RNA-Seq Expression	CSPI07G11740
Synteny	CSPI07G11740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTTTTTGTTCCTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGTGTCTTGTTTCTCCTTTCTCCTTTCTCGTTTTCAATCTCTCTATGAAACAAATTTTGTACCTGCTCTTGGTTTCTTGTTTCCCATTTATTCGAAAATTACGTGTTTTCAAAATTGTGAAGACGGTTTTTGGCAACAGTAAAAACCAAATCTTCTTGTTTTCCCATCGCTTTATCTCGTTTCTTATATCATTTTATTTTTACTTCTAAATTGCATAAGAAACTGTACATTTTTTATTTTATATATACCAAATTGATATACCAAGTTCTCCTTCGATTATATTTATTTATTTGTTTTGTTTTTCCTCTCAGGATGATTAAGAACAAACTCTTCATTGATCGAGCTGGTGCAATACTTTGAAGAATATAGAAGAAGAAAGAACCATATCCCT

mRNA sequence

TCCATTTTTTGTTCCTCTTTCCAAAACCCATTTCTTTTGTTTTGGCAATTCAAAGCTCAATACTAACAAAAGTAATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGATTAAGAACAAACTCTTCATTGATCGAGCTGGTGCAATACTTTGAAGAATATAGAAGAAGAAAGAACCATATCCCT

Coding sequence (CDS)

ATGGCTTCAATGTCCTCTCATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACATTTGAAATGGCTTTGGCTGAATATGATCAAGACACTCCTGAACGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATTGAGTCTGGCAATGTCCCTTTTCCCTATCCAAAGACATCGAGCAATGATGATTTGCCAAGGAAACGAGGATGA

Protein sequence

MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPKTSSNDDLPRKRG*

Homology

[Close]

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-19
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S +WT+ +NK FE ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFPYPKTSSND 81
          V  IESG  P P  +++ N+
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-18
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL
Match: A0A5D3D8F6 (Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00200 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL
Match: A0A1S3BHZ4 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL
Match: A0A6J1GK35 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL
Match: A0A6J1I517 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAK VGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL
Match: A0A6J1C6U4 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSS GS+AWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESG+VPFPY +TS++DD P KRG
Sbjct: 61 VKHIESGHVPFPY-QTSNDDDFPTKRG 86

[Close]

BLAST of CSPI07G11740 vs. NCBI nr
Match: XP_011659078.1 (protein RADIALIS-like 2 [Cucumis sativus] >KAE8646141.1 hypothetical protein Csa_015657 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 6.3e-41
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSSNDDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]

BLAST of CSPI07G11740 vs. NCBI nr
Match: XP_008447294.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CSPI07G11740 vs. NCBI nr
Match: KAA0036174.1 (protein RADIALIS-like 2 [Cucumis melo var. makuwa] >TYK19719.1 protein RADIALIS-like 2 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP TSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 87

[Close]

BLAST of CSPI07G11740 vs. NCBI nr
Match: XP_038888638.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWT MQNKTFE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL D
Sbjct: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPYP  SS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYP--SSSDDLPRKRG 85

[Close]

BLAST of CSPI07G11740 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG7011709.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 7.5e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSS GSNAWT MQNK FE ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPKTSSNDDLPRKRG 88
          VKHIESGNVPFPY   +S+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPY--RNSSDDLPRKRG 85

[Close]

BLAST of CSPI07G11740 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-23
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 2  ASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPKTS 78
            IE+G+VPFP  +TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G11740 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 8.3e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 3  SMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPKTSSNDDLPRKR 87
           IE+G+VPFP Y  T+ N +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of CSPI07G11740 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-20
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE   VP P  KT
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]

BLAST of CSPI07G11740 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CSPI07G11740 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFPYPKT 77
          + +IE+G VP P  KT
Sbjct: 61 LINIETGRVPLPNYKT 76

The following BLAST results are available for this feature:

BLAST of CSPI07G11740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	5.2e-22	65.79	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.2e-21	61.18	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	1.9e-19	57.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	1.2e-18	60.53	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1A173	2.7e-18	61.84	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CSPI07G11740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8F6	1.2e-40	96.55	Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHZ4	1.2e-40	96.55	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1	[more]
A0A6J1GK35	3.6e-34	87.36	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1	[more]
A0A6J1I517	1.1e-33	86.21	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1	[more]
A0A6J1C6U4	2.2e-31	81.61	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1	[more]

BLAST of CSPI07G11740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659078.1	6.3e-41	97.70	protein RADIALIS-like 2 [Cucumis sativus] >KAE8646141.1 hypothetical protein Csa...	[more]
XP_008447294.1	2.4e-40	96.55	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
KAA0036174.1	2.4e-40	96.55	protein RADIALIS-like 2 [Cucumis melo var. makuwa] >TYK19719.1 protein RADIALIS-...	[more]
XP_038888638.1	1.8e-35	90.80	protein RADIALIS-like 1 [Benincasa hispida]	[more]
XP_022952273.1	7.5e-34	87.36	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li...	[more]

BLAST of CSPI07G11740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.7e-23	65.79	RAD-like 1	[more]
AT2G21650.1	8.3e-23	61.18	Homeodomain-like superfamily protein	[more]
AT1G19510.1	8.6e-20	60.53	RAD-like 5	[more]
AT1G75250.1	1.9e-19	61.84	RAD-like 6	[more]
AT1G75250.2	1.9e-19	61.84	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.4E-7 score: 41.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.155979
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 2.47874E-6 score: 38.7106
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 2.0E-21 score: 77.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..87
None	No IPR available	PANTHER	PTHR43952:SF40	OS05G0579600 PROTEIN	coord: 1..79
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..58 e-value: 8.3E-6 score: 25.9
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G11740.1	CSPI07G11740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity