CSPI07G10350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G10350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr7: 8446946 .. 8447497 (+)
RNA-Seq Expression	CSPI07G10350
Synteny	CSPI07G10350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTGGAAAAATCTCACCATGACTTTCTATCATGAAAATAATAAGGTGGTTATAAGGAGACACCCAAGCTTAACTAAAACCCGAGTAAGCTTGAAGAGTATGATAAAGGCATGGACAAAATCTGATCAAGGATTCTTGATTGAATGCAGAGCCTTGGAGGGAGGAATATCATTAGCCGATTTGTATGGATTAGATGATGTGCCTAATATACAAGAGTCTATCCCGGCCGTATTAGCGAAACTCGAAGATGCGTTTGAACGGTCTGAAGAAATACCCTCGACGAGGGAAATCGAGCATCACATACATCTAAAGAAAGGTACAGATCCGATGAATGTGAAGTCCTATAGATTTCCATACCAACAAAAGCCTAAGATGGAGAAGTTAGTGGACGAAATGCTAGCTTCTGGAGTCATTCGCCCAAGCACCAATCCCCACTCAAGCCCAGTATTATTGGTGAAAAAGGAAGATGGGAGTTGGAGATTCTGTGTAGACTACAGAGCCCTAAATAACGTGAGAATCCCAGATAAATTTTTCCATCCCTGTGATTGA

mRNA sequence

ATGGACTGGAAAAATCTCACCATGACTTTCTATCATGAAAATAATAAGGTGGTTATAAGGAGACACCCAAGCTTAACTAAAACCCGAGTAAGCTTGAAGAGTATGATAAAGGCATGGACAAAATCTGATCAAGGATTCTTGATTGAATGCAGAGCCTTGGAGGGAGGAATATCATTAGCCGATTTGTATGGATTAGATGATGTGCCTAATATACAAGAGTCTATCCCGGCCGTATTAGCGAAACTCGAAGATGCGTTTGAACGGTCTGAAGAAATACCCTCGACGAGGGAAATCGAGCATCACATACATCTAAAGAAAGGTACAGATCCGATGAATGTGAAGTCCTATAGATTTCCATACCAACAAAAGCCTAAGATGGAGAAGTTAGTGGACGAAATGCTAGCTTCTGGAGTCATTCGCCCAAGCACCAATCCCCACTCAAGCCCAGTATTATTGGTGAAAAAGGAAGATGGGAGTTGGAGATTCTGTGTAGACTACAGAGCCCTAAATAACGTGAGAATCCCAGATAAATTTTTCCATCCCTGTGATTGA

Coding sequence (CDS)

ATGGACTGGAAAAATCTCACCATGACTTTCTATCATGAAAATAATAAGGTGGTTATAAGGAGACACCCAAGCTTAACTAAAACCCGAGTAAGCTTGAAGAGTATGATAAAGGCATGGACAAAATCTGATCAAGGATTCTTGATTGAATGCAGAGCCTTGGAGGGAGGAATATCATTAGCCGATTTGTATGGATTAGATGATGTGCCTAATATACAAGAGTCTATCCCGGCCGTATTAGCGAAACTCGAAGATGCGTTTGAACGGTCTGAAGAAATACCCTCGACGAGGGAAATCGAGCATCACATACATCTAAAGAAAGGTACAGATCCGATGAATGTGAAGTCCTATAGATTTCCATACCAACAAAAGCCTAAGATGGAGAAGTTAGTGGACGAAATGCTAGCTTCTGGAGTCATTCGCCCAAGCACCAATCCCCACTCAAGCCCAGTATTATTGGTGAAAAAGGAAGATGGGAGTTGGAGATTCTGTGTAGACTACAGAGCCCTAAATAACGTGAGAATCCCAGATAAATTTTTCCATCCCTGTGATTGA

Protein sequence

MDWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLADLYGLDDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKFFHPCD*

Homology

[Close]

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 98  IEHHIHLKKGTDPMNVKSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKED 157
           ++H I +K G     ++ Y    + + ++ K+V ++L +  I PS +P SSPV+LV K+D
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 158 GSWRFCVDYRALNNVRIPDKF 179
           G++R CVDYR LN   I D F
Sbjct: 644 GTFRLCVDYRTLNKATISDPF 664

[Close]

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 98  IEHHIHLKKGTDPMNVKSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKED 157
           ++H I +K G     ++ Y    + + ++ K+V ++L +  I PS +P SSPV+LV K+D
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 158 GSWRFCVDYRALNNVRIPDKF 179
           G++R CVDYR LN   I D F
Sbjct: 670 GTFRLCVDYRTLNKATISDPF 690

[Close]

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 109 DPMNVKSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKE-----DGSWRFC 168
           DP+  KSY +P   + ++E+ +DE+L  G+IRPS +P++SP+ +V K+     +  +R  
Sbjct: 122 DPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMV 181

Query: 169 VDYRALNNVRIPDKF 179
           VD++ LN V IPD +
Sbjct: 182 VDFKRLNTVTIPDTY 196

[Close]

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot
Match: P03364 (Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 106  KGTDPMNVKSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVD 165
            K TDP+ V  +   Y++      LV E LA+G I P+ +P ++P+ ++KK+ GSWR   D
Sbjct: 1016 KITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWRLLQD 1075

Query: 166  YRALNNVRIP 176
             RA+N V +P
Sbjct: 1076 LRAVNKVMVP 1085

[Close]

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot
Match: Q87040 (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-07
Identity = 28/99 (28.28%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 72  QESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFPYQQKPKMEKLVD 131
           ++ + A+  K ++ ++  E     R+I  H        P   K Y    + KP ++ ++D
Sbjct: 124 KQQLKALFTKYDNLWQHWENQVGHRKIRPHNIATGDYPPRPQKQYPINPKAKPSIQIVID 183

Query: 132 EMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALN 171
           ++L  GV+ P  +  ++PV  V K DG WR  +DYR +N
Sbjct: 184 DLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVN 222

[Close]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.8e-55
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.8e-55
Identity = 108/185 (58.38%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 1   MDWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLA 60
           +DWKNLT+TF+   NKV I+  PSLTKT++SLK MIK+W   DQG+L+ECR LE      
Sbjct: 573 VDWKNLTLTFFEHGNKVTIKGDPSLTKTQISLKGMIKSWDTEDQGYLVECRTLE------ 632

Query: 61  DLYGLDD---VPNIQES----IPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNV 120
              G++D      I E+      A+L K  D FER   +P  R IEHHI+LK+G DP+NV
Sbjct: 633 -KEGMEDREVDTQITETEGGRTTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPINV 692

Query: 121 KSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVR 179
           + YR+ +QQK +ME+LVDEML+SG+IRPST+P+SSPVLLV+K+DGSWRFCVDYRALNNV 
Sbjct: 693 RPYRYAHQQKEEMERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 750

[Close]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL
Match: A0A5A7V5H5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00250 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.8e-55
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL
Match: A0A5A7VJA0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001740 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.8e-55
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL
Match: A0A5D3D5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00880 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.0e-54
Identity = 104/179 (58.10%), Postives = 138/179 (77.09%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 404 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 463

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L +  D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 464 PITLHKEEKGEIEEKLLPILDQFNDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 523

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 524 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 580

[Close]

BLAST of CSPI07G10350 vs. NCBI nr
Match: XP_031745972.1 (uncharacterized protein LOC116406393 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-57
Identity = 110/178 (61.80%), Postives = 137/178 (76.97%), Query Frame = 0


Query: 1   MDWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLA 60
           +DWKNLTMTF H   KV I+  PSLTK  V LK+MIK+W  SDQGFLIECRA+E      
Sbjct: 516 VDWKNLTMTFLHNGKKVKIKGDPSLTKAMVGLKNMIKSWRDSDQGFLIECRAMETMYEPP 575

Query: 61  DLYGLDDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFPY 120
           +  G+++V  + E++  VL K ED F   E +P  R IEHHI+LK+GTDP+NV+ YR+ Y
Sbjct: 576 EDNGIEEVLAVDEAVSDVLKKFEDVFTWPETLPPRRSIEHHIYLKQGTDPVNVRPYRYGY 635

Query: 121 QQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           QQK +ME+LV+EML+SGVIRPS +P+SSPVLLV+K+DGSWRFCVDYR LN+V IPDKF
Sbjct: 636 QQKAEMERLVEEMLSSGVIRPSNSPYSSPVLLVRKKDGSWRFCVDYRVLNSVTIPDKF 693

[Close]

BLAST of CSPI07G10350 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-54
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. NCBI nr
Match: KAA0062868.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-54
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. NCBI nr
Match: KAA0068193.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-54
Identity = 104/179 (58.10%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 2   DWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLAD 61
           DWKNLT+TFY +  K+ I+  PSLTK RVSLK+++K W + D G+LIECR++  GI +A+
Sbjct: 525 DWKNLTLTFYDDKKKICIKGDPSLTKARVSLKNLVKTWEEHDHGYLIECRSM--GIEIAE 584

Query: 62  LYGL--DDVPNIQESIPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNVKSYRFP 121
              L  ++   I+E +  +L + +D FE  E++P  R IEH IHLK+GT+P+NV+ YR+ 
Sbjct: 585 PITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHLKEGTNPVNVRPYRYA 644

Query: 122 YQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVRIPDKF 179
           Y QK +ME+LV+EMLASG+IRPS +P+SSPVLLVKK+DGSWRFCVDYRALNNV +PDKF
Sbjct: 645 YHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCVDYRALNNVTVPDKF 701

[Close]

BLAST of CSPI07G10350 vs. NCBI nr
Match: KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-54
Identity = 108/185 (58.38%), Postives = 137/185 (74.05%), Query Frame = 0


Query: 1   MDWKNLTMTFYHENNKVVIRRHPSLTKTRVSLKSMIKAWTKSDQGFLIECRALEGGISLA 60
           +DWKNLT+TF+   NKV I+  PSLTKT++SLK MIK+W   DQG+L+ECR LE      
Sbjct: 573 VDWKNLTLTFFEHGNKVTIKGDPSLTKTQISLKGMIKSWDTEDQGYLVECRTLE------ 632

Query: 61  DLYGLDD---VPNIQES----IPAVLAKLEDAFERSEEIPSTREIEHHIHLKKGTDPMNV 120
              G++D      I E+      A+L K  D FER   +P  R IEHHI+LK+G DP+NV
Sbjct: 633 -KEGMEDREVDTQITETEGGRTTAILNKFRDVFERPNRLPPQRGIEHHIYLKQGADPINV 692

Query: 121 KSYRFPYQQKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSWRFCVDYRALNNVR 179
           + YR+ +QQK +ME+LVDEML+SG+IRPST+P+SSPVLLV+K+DGSWRFCVDYRALNNV 
Sbjct: 693 RPYRYAHQQKEEMERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVT 750

[Close]

BLAST of CSPI07G10350 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-05
Identity = 18/39 (46.15%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 122 QKPKMEKLVDEMLASGVIRPSTNPHSSPVLLVKKEDGSW 161
           ++ +++  + EML + +I+PS +P+SSPVLLV+K+DG W
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of CSPI07G10350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.0e-11	39.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.0e-11	39.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	3.9e-11	38.67	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P03364	2.1e-09	40.00	Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3	[more]
Q87040	2.0e-07	28.28	Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol ...	[more]

BLAST of CSPI07G10350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEL2	7.8e-55	58.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U2S1	7.8e-55	58.38	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V5H5	7.8e-55	58.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VJA0	7.8e-55	58.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D5G0	1.0e-54	58.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI07G10350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745972.1	1.6e-57	61.80	uncharacterized protein LOC116406393 [Cucumis sativus]	[more]
TYJ96875.1	1.6e-54	58.10	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp...	[more]
KAA0062868.1	1.6e-54	58.10	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068193.1	1.6e-54	58.10	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049630.1	1.6e-54	58.38	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI07G10350 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	2.5e-05	46.15	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 88..183 e-value: 2.7E-29 score: 103.7
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 61..181
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 61..181
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 88..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G10350.1	CSPI07G10350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane