CSPI07G08910 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08910
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7: 6721201 .. 6721599 (-)
RNA-Seq Expression	CSPI07G08910
Synteny	CSPI07G08910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTCCTTATGTATCTATTGTTGGAAGCTTATTGTATGCACAAAGTTGCACTAGACCAGACATCAGTTTTGATATGGGCATGCTAGGTAGATATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATTCTTACTTACAAGAGATTTGATCATCTTGAGGTGATTGAATATTTAGATTCAAATTTTACCAGATGTGTGGATACACGAAAATCCACTTTTGGCTATTTGTTCCTATTAGCTAAAGGACCAATTTTATGGAAAAGTGCAAAGCAGTCTATCATCGCTGCATCCACTATGAAGGCTAAATTTGTAGCATGCTTTGAGTCTACAATTCATGGTTTATGGTTGTAG

mRNA sequence

ATGGGTATTCCTTATGTATCTATTGTTGGAAGCTTATTGTATGCACAAAGTTGCACTAGACCAGACATCAGTTTTGATATGGGCATGCTAGGTAGATATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATTCTTACTTACAAGAGATTTGATCATCTTGAGGTGATTGAATATTTAGATTCAAATTTTACCAGATGTGTGGATACACGAAAATCCACTTTTGGCTATTTGTTCCTATTAGCTAAAGGACCAATTTTATGGAAAAGTGCAAAGCAGTCTATCATCGCTGCATCCACTATGAAGGCTAAATTTGTAGCATGCTTTGAGTCTACAATTCATGGTTTATGGTTGTAG

Coding sequence (CDS)

ATGGGTATTCCTTATGTATCTATTGTTGGAAGCTTATTGTATGCACAAAGTTGCACTAGACCAGACATCAGTTTTGATATGGGCATGCTAGGTAGATATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAGGATTATATTCTTACTTACAAGAGATTTGATCATCTTGAGGTGATTGAATATTTAGATTCAAATTTTACCAGATGTGTGGATACACGAAAATCCACTTTTGGCTATTTGTTCCTATTAGCTAAAGGACCAATTTTATGGAAAAGTGCAAAGCAGTCTATCATCGCTGCATCCACTATGAAGGCTAAATTTGTAGCATGCTTTGAGTCTACAATTCATGGTTTATGGTTGTAG

Protein sequence

MGIPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYKRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVACFESTIHGLWL*

Homology

[Close]

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 3    IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
            +PY S VGSL+YA  CTRPDI+  +G++ R+  NPG +HW+A K +LRYL+GT    L +
Sbjct: 1109 VPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF 1168

Query: 63   KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
               D + +  Y D++    +D RKS+ GYLF  + G I W+S  Q  +A ST +A+++A 
Sbjct: 1169 GGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAA 1228

Query: 123  FESTIHGLWL 133
             E+    +WL
Sbjct: 1229 TETGKEMIWL 1237

[Close]

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-24
Identity = 51/130 (39.23%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           +PY+S VG+++Y    TRPD++  +G+L ++ S+P   HW+A K+VLRYLQ T+ Y L +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
            R    +++ Y D+++   V++R+ST GYLF L  G + W+S KQ  +A S+ + +++A 
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 123 FESTIHGLWL 133
            E+T   +WL
Sbjct: 124 SEATQEAVWL 133

[Close]

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-20
Identity = 52/133 (39.10%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 4    PYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYK 63
            P  S++G L+Y   CTRPD++  + +L RY S    + W+  K+VLRYL+GT D  L +K
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 64   R---FDHLEVIEYLDSNFTRCVDTRKSTFGYLF-LLAKGPILWKSAKQSIIAASTMKAKF 123
            +   F++ ++I Y+DS++      RKST GYLF +     I W + +Q+ +AAS+ +A++
Sbjct: 1240 KNLAFEN-KIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1299

Query: 124  VACFESTIHGLWL 133
            +A FE+    LWL
Sbjct: 1300 MALFEAVREALWL 1311

[Close]

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 5    YVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYKR 64
            Y  IVGSL Y  + TRPD+S+ +  L +Y   P  DHW A K+VLRYL GT D+ +  K+
Sbjct: 1228 YRGIVGSLQYL-AFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 65   FDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVACFE 124
             + L +  Y D+++    D   ST GY+  L   PI W S KQ  +  S+ +A++ +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 125  STIHGLWL 133
            ++    W+
Sbjct: 1348 TSSELQWI 1354

[Close]

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-16
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 4   PYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYK 63
           PY SIVG LL+  +  RPDIS+ + +L R+   P   H ++A++VLRYL  T+   L Y+
Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241

Query: 64  RFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAK-QSIIAASTMKAKFVAC 123
               L +  Y D++     D   ST GY+ LLA  P+ W S K + +I   + +A+++  
Sbjct: 242 SGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITA 301

Query: 124 FESTI 128
            E+ +
Sbjct: 302 SETVM 306

[Close]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL
Match: A0A5A7TTF5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001050 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.4e-58
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSNPGMDHWKAAKKVLRYLQGTKDY+LTY
Sbjct: 527 IPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTY 586

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WK AKQSIIAASTM+A+FVAC
Sbjct: 587 KRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEAEFVAC 646

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 647 FEATVHGLWL 656

[Close]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL
Match: A0A5A7V4M2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00040 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.1e-57
Identity = 108/130 (83.08%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSNPGMDHWK AKKVLRYLQGTKDY+LTY
Sbjct: 4   IPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTY 63

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I W+SAKQSII AS+M+A+FVAC
Sbjct: 64  KRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEFVAC 123

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 124 FEATVHGLWL 133

[Close]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL
Match: A0A5A7VDS1 (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001000 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF  GMLGRYQSNPGMDHWK AKKVL+YLQGTKDY+LTY
Sbjct: 208 IPYASIVGSLLYAQTCTRPDISFAAGMLGRYQSNPGMDHWKVAKKVLKYLQGTKDYMLTY 267

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WKSAKQSIIAASTM+ +FVAC
Sbjct: 268 KRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEVEFVAC 327

Query: 123 FESTIHGLWL 133
           FE+T+HG+WL
Sbjct: 328 FEATVHGVWL 337

[Close]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL
Match: A0A5A7SS51 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00410 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 109/130 (83.85%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLL AQ+CTRPDISF +GMLGRYQSNPGMDHWK AKKVLRYLQGTKDY+LTY
Sbjct: 75  IPYASIVGSLLCAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTY 134

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+FT CVDTRKSTFGYLFLLA+G I WKS KQSIIAASTM+ +FVAC
Sbjct: 135 KRSDHLEVIGYSDSDFTGCVDTRKSTFGYLFLLAEGAISWKSVKQSIIAASTMEVEFVAC 194

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 195 FEATVHGLWL 204

[Close]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL
Match: A0A5A7UCB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001140 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.8e-57
Identity = 109/130 (83.85%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSN GMDHWKAAKKVLRYL+GTKDY+LTY
Sbjct: 4   IPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYMLTY 63

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WKSAKQSIIAAS M+A+FVAC
Sbjct: 64  KRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEFVAC 123

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 124 FEATVHGLWL 133

[Close]

BLAST of CSPI07G08910 vs. NCBI nr
Match: KAA0046843.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04491.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 5.0e-58
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSNPGMDHWKAAKKVLRYLQGTKDY+LTY
Sbjct: 527 IPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTY 586

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WK AKQSIIAASTM+A+FVAC
Sbjct: 587 KRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKIAKQSIIAASTMEAEFVAC 646

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 647 FEATVHGLWL 656

[Close]

BLAST of CSPI07G08910 vs. NCBI nr
Match: KAA0061426.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.3e-57
Identity = 108/130 (83.08%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSNPGMDHWK AKKVLRYLQGTKDY+LTY
Sbjct: 4   IPYASIVGSLLYAQTCTRPDISFTVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTY 63

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I W+SAKQSII AS+M+A+FVAC
Sbjct: 64  KRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWRSAKQSIIGASSMEAEFVAC 123

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 124 FEATVHGLWL 133

[Close]

BLAST of CSPI07G08910 vs. NCBI nr
Match: KAA0032876.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 7.3e-57
Identity = 109/130 (83.85%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLL AQ+CTRPDISF +GMLGRYQSNPGMDHWK AKKVLRYLQGTKDY+LTY
Sbjct: 75  IPYASIVGSLLCAQTCTRPDISFAVGMLGRYQSNPGMDHWKVAKKVLRYLQGTKDYMLTY 134

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+FT CVDTRKSTFGYLFLLA+G I WKS KQSIIAASTM+ +FVAC
Sbjct: 135 KRSDHLEVIGYSDSDFTGCVDTRKSTFGYLFLLAEGAISWKSVKQSIIAASTMEVEFVAC 194

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 195 FEATVHGLWL 204

[Close]

BLAST of CSPI07G08910 vs. NCBI nr
Match: KAA0065424.1 (retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 7.3e-57
Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF  GMLGRYQSNPGMDHWK AKKVL+YLQGTKDY+LTY
Sbjct: 208 IPYASIVGSLLYAQTCTRPDISFAAGMLGRYQSNPGMDHWKVAKKVLKYLQGTKDYMLTY 267

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WKSAKQSIIAASTM+ +FVAC
Sbjct: 268 KRSDHLEVIGYSDSDFVGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASTMEVEFVAC 327

Query: 123 FESTIHGLWL 133
           FE+T+HG+WL
Sbjct: 328 FEATVHGVWL 337

[Close]

BLAST of CSPI07G08910 vs. NCBI nr
Match: KAA0051161.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 109/130 (83.85%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 3   IPYVSIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTY 62
           IPY SIVGSLLYAQ+CTRPDISF +GMLGRYQSN GMDHWKAAKKVLRYL+GTKDY+LTY
Sbjct: 4   IPYASIVGSLLYAQTCTRPDISFAVGMLGRYQSNLGMDHWKAAKKVLRYLEGTKDYMLTY 63

Query: 63  KRFDHLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVAC 122
           KR DHLEVI Y DS+F  CVDTRKSTFGYLFLLA+G I WKSAKQSIIAAS M+A+FVAC
Sbjct: 64  KRSDHLEVIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIAASIMEAEFVAC 123

Query: 123 FESTIHGLWL 133
           FE+T+HGLWL
Sbjct: 124 FEATVHGLWL 133

[Close]

BLAST of CSPI07G08910 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 7   SIVGSLLYAQSCTRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYKRFD 66
           SIVG+L Y  + TRPDIS+ + ++ +    P +  +   K+VLRY++GT  + L   +  
Sbjct: 102 SIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS 161

Query: 67  HLEVIEYLDSNFTRCVDTRKSTFGYLFLLAKGPILWKSAKQSIIAASTMKAKFVA 122
            L V  + DS++  C  TR+ST G+   L    I W + +Q  ++ S+ + ++ A
Sbjct: 162 KLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRA 215

[Close]

BLAST of CSPI07G08910 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-07
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 19 TRPDISFDMGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYILTYKRFDHLEVIEYLDSNF 78
          TRPD++F +  L ++ S       +A  KVL Y++GT    L Y     L++  + DS++
Sbjct: 6  TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 79 TRCVDTRKSTFGYLFLL 96
            C DTR+S  G+  L+
Sbjct: 66 ASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of CSPI07G08910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-24	42.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.9e-24	39.23	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	7.4e-20	39.10	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.7e-16	36.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	5.0e-16	35.20	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CSPI07G08910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTF5	2.4e-58	85.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M2	2.1e-57	83.08	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7VDS1	3.5e-57	83.08	Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Cucumis melo...	[more]
A0A5A7SS51	3.5e-57	83.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UCB2	7.8e-57	83.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CSPI07G08910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046843.1	5.0e-58	85.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061426.1	4.3e-57	83.08	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]	[more]
KAA0032876.1	7.3e-57	83.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065424.1	7.3e-57	83.08	retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo v...	[more]
KAA0051161.1	1.6e-56	83.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of CSPI07G08910 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.2e-11	32.17	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.3e-07	33.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..95
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 16..95
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 73..132 e-value: 4.96521E-21 score: 80.5901

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08910.1	CSPI07G08910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding