CSPI07G08900 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08900
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein RADIALIS-like 1
Location	Chr7: 6717808 .. 6718872 (+)
RNA-Seq Expression	CSPI07G08900
Synteny	CSPI07G08900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACCTTTCAAAATAATACTTCTTTTTTAGTCCTTTCTTTTTTCTCTAACCCTTTAATTATCATTACCTTTTATTTTCCCTTCACTTCAAACCCTTTTAAGGCTTCCTTTTTATTTTGTCAATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAAGCATTGATGGAACAAGGTAATATACATTGTTAGATCACTCCTGAACTCAATTTTTTTTTATAAAAAAAAACGATAAATAGAAAAATAGAATTGAATCTGAAAGTATAAAGGTGATGGTTTAAGATAAATTTAGCCTTTTGGAGTTAAATATTAATATTGAGTATGTTGTGAGGTTCCTTTCCCATATCCAAGCTCAAGATGATTGAGAAATAATATATGTATGGAAAGAGACGAAGTTGGGGTATACCAATTGGTCAATATTTAGTTAAAATTTGGGTTGGTTTGCATTAGTTGTATTTTCGAGAGCTTAAAAAGTGCTACATTCTAGAAAGTAATTCCATGCAAGTCCATAATTACGCTTTTATGGTATTATGCTTTGAAATTCTCTCTTTCTAATGTATTTTTCTCTCTAGAACGACGTTTTGACTTTATGATGTAAAAAGTTTGAACTTGTATATAATAATTATATGTAATATCAAATAATGAAGCATTTTATTGTTCATACACATTTATCATTAATTGATTATAACACAGTATCTCTTATATTTTCTTTGTTCTTACCAGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAAGCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTTGAATGGAATAAATGATTATTTGC

mRNA sequence

TTCACCTTTCAAAATAATACTTCTTTTTTAGTCCTTTCTTTTTTCTCTAACCCTTTAATTATCATTACCTTTTATTTTCCCTTCACTTCAAACCCTTTTAAGGCTTCCTTTTTATTTTGTCAATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAAGCATTGATGGAACAAGGAAGATTGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGAAGCAAAAAGCATATTATGTTTGTCTTTTTGTGCCAATTTAAAGTGTAACTGTAATTTTTTTTGAATGGAATAAATGATTATTTGC

Coding sequence (CDS)

ATGGCTTCCATGACTGCTCATGGACCAAGCACTACATGGACTATAAACCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGCTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAGCCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTTCCTTATCGAAGATCTACGCGATCAAGTCATTAA

Protein sequence

MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPFPYRRSTRSSH*

Homology

[Close]

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-22
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 5  TAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKH 64
          +  G    W+  +NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVK HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGEIPFPYRRST 79
          IESG++PFP  R+T
Sbjct: 63 IESGKVPFPNYRTT 76

[Close]

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP-YRRSTRSSH 83
          + IE+G +PFP Y+ +T +S+
Sbjct: 65 ESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.4e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP-YRRS 78
          +D+  IE+G +PFP YR S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPF 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P 
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PYRRSTRSS 82
          P  ++  S+
Sbjct: 72 PNYKTFESN 80

[Close]

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-19
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGE 69
          S +WT  +NK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+ HY+LL+ DV  IESG 
Sbjct: 9  SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGR 68

Query: 70 IPFPYRRSTRSSH 83
           P P  RS  ++H
Sbjct: 69 YPHPNYRSNGNNH 81

[Close]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL
Match: A0A5A7T3V4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00070 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPST WT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKHIESGEIPFPYRRST 79
          DVKHIESGEIPFPYRR T
Sbjct: 61 DVKHIESGEIPFPYRRLT 78

[Close]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL
Match: A0A0A0K3K5 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFP 74
          DVKHIESG +  P
Sbjct: 61 DVKHIESGRLIEP 73

[Close]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL
Match: A0A0A0K3K0 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIESG+IPFPYR+STRSS
Sbjct: 61 DVNHIESGQIPFPYRKSTRSS 80

[Close]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL
Match: A0A1S3BGF0 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.1e-30
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIE+G+IPFPYR STRSS
Sbjct: 61 DVNHIENGQIPFPYRNSTRSS 80

[Close]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL
Match: A0A6J1GKK4 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVK IESGE+PFPY RS
Sbjct: 61 DVKQIESGEVPFPYGRS 77

[Close]

BLAST of CSPI07G08900 vs. NCBI nr
Match: KAE8645640.1 (hypothetical protein Csa_020521 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFPYRRSTRSSH 83
          DVKHIESGEIPFPYRRSTRSSH
Sbjct: 61 DVKHIESGEIPFPYRRSTRSSH 82

[Close]

BLAST of CSPI07G08900 vs. NCBI nr
Match: KAA0036165.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASMTAHGPST WT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKHIESGEIPFPYRRST 79
          DVKHIESGEIPFPYRR T
Sbjct: 61 DVKHIESGEIPFPYRRLT 78

[Close]

BLAST of CSPI07G08900 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG ST WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEE+VK HYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRSTRSS 82
          DV HIE+G+IPFPYR STRSS
Sbjct: 61 DVNHIENGQIPFPYRNSTRSS 80

[Close]

BLAST of CSPI07G08900 vs. NCBI nr
Match: XP_022952074.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572044.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011711.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 3.4e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG + +WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVK IESGE+PFPY RS
Sbjct: 61 DVKQIESGEVPFPYGRS 77

[Close]

BLAST of CSPI07G08900 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 5.8e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60
          MASM+AHG S  WT  QNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK HYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYRRS 78
          DVKHIESG++PFPYR S
Sbjct: 61 DVKHIESGKVPFPYRTS 76

[Close]

BLAST of CSPI07G08900 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 3  SMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDV 62
          SM+++G S +WT+ QNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K  Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP-YRRSTRSSH 83
          + IE+G +PFP Y+ +T +S+
Sbjct: 65 ESIENGHVPFPDYKTTTGNSN 84

[Close]

BLAST of CSPI07G08900 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-22
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MASMTAHGPST-TWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLV 60
          MAS +    S+ +WT  QNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK HY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP-YRRS 78
          +D+  IE+G +PFP YR S
Sbjct: 61 QDINSIENGHVPFPNYRTS 79

[Close]

BLAST of CSPI07G08900 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 100.1 bits (248), Expect = 8.6e-22
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPF 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P 
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PYRRSTRSS 82
          P  ++  S+
Sbjct: 72 PNYKTFESN 80

[Close]

BLAST of CSPI07G08900 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 100.1 bits (248), Expect = 8.6e-22
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 13 WTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGEIPF 72
          WT +QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK HY +LVED+ +IE+G +P 
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 73 PYRRSTRSS 82
          P  ++  S+
Sbjct: 72 PNYKTFESN 80

[Close]

BLAST of CSPI07G08900 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 10 STTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVEDVKHIESGE 69
          S++WT  QNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVK HY +LVED+ +IE   
Sbjct: 9  SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDL 68

Query: 70 IPFP 74
          +P P
Sbjct: 69 VPLP 72

The following BLAST results are available for this feature:

BLAST of CSPI07G08900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q58FS3	1.3e-22	60.81	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	1.4e-21	59.26	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	5.4e-21	62.03	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	1.2e-20	63.77	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	1.8e-19	57.53	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of CSPI07G08900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T3V4	7.6e-34	93.59	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3K5	4.6e-31	94.52	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 S...	[more]
A0A0A0K3K0	1.3e-30	83.95	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 S...	[more]
A0A1S3BGF0	5.1e-30	82.72	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]
A0A6J1GKK4	1.6e-28	81.82	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1	[more]

BLAST of CSPI07G08900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645640.1	3.3e-39	100.00	hypothetical protein Csa_020521 [Cucumis sativus]	[more]
KAA0036165.1	1.6e-33	93.59	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-...	[more]
XP_008447026.1	1.1e-29	82.72	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_022952074.1	3.4e-28	81.82	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-li...	[more]
XP_008447025.1	5.8e-28	83.12	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]

BLAST of CSPI07G08900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	1.0e-22	59.26	Homeodomain-like superfamily protein	[more]
AT4G39250.1	3.9e-22	62.03	RAD-like 1	[more]
AT1G75250.1	8.6e-22	63.77	RAD-like 6	[more]
AT1G75250.2	8.6e-22	63.77	RAD-like 6	[more]
AT1G19510.1	1.1e-19	64.06	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 e-value: 4.2E-4 score: 29.6
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 19..59 e-value: 1.2947E-4 score: 34.0882
None	No IPR available	GENE3D	1.10.10.60		coord: 5..72 e-value: 5.1E-22 score: 79.4
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08900.1	CSPI07G08900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity