CSPI07G08620 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08620
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	Chr7: 6446704 .. 6447250 (+)
RNA-Seq Expression	CSPI07G08620
Synteny	CSPI07G08620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATGTTATTACCGACTATGATTATCTAACAGTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGGTTTTTGGGGTTGGAATTTGTGGCGTCAACCTATAGGGTTTGTTATTTTTCTAATTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGGTATAAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACTGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTAGGTTATGAACTTTTTGAAATAAATAAAGTGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCGAAAACTTATTTGTTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

mRNA sequence

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

Coding sequence (CDS)

ATGTACGGTTCTGTAATAGCGATGAGAACAGTGATTTCGAGTACCGTTGATATAGTTGAGGCTCAATCAAAATATGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCGGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTCGGCAATTCATGGAAAGATGAATCGAGGAAAAACTTATGA

Protein sequence

MYGSVIAMRTVISSTVDIVEAQSKYECERLPFDLPEAEEELVAGYQTEYSATRWTLPRLRIDQLGNSWKDESRKNL*

Homology

[Close]

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot
Match: A1EA64 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera OX=63632 GN=ndhA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 181 ISLLSNSSSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELV 240

[Close]

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot
Match: A1E9X9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor OX=4558 GN=ndhA PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 181 ISLLSNSSSTVDIVEAQSKYGFFGWNLWRQPIGFLVFLISSLAECERLPFDLPEAEEELV 240

[Close]

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot
Match: Q3V4X9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Acorus calamus OX=4465 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 184 ISLLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFLVFLVSSLAECERLPFDLPEAEEELV 243

[Close]

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot
Match: Q8S8U5 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna OX=33113 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 182 ISLLSNSSSTVDIVEAQSKYGFLGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELV 241

[Close]

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot
Match: Q7YJS9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.2e-11
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 57
           I++ +  SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 182 ISLLSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELV 241

[Close]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL
Match: A0A124SAL1 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_024865 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.9e-12
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MYGSVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEA 57
          MYGSVI M TVI ST+DIVEAQSKY                       ECERLPFDLPEA
Sbjct: 1  MYGSVIGMGTVILSTIDIVEAQSKYAFWGWNLWRQLIGFFVFLISSLAECERLPFDLPEA 60

[Close]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL
Match: A0A4S8I551 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t01280 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 44/72 (61.11%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 8  MRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAG 57
          M TVISSTVDIVEAQSKY                       ECERLPFDLPEAEEELVAG
Sbjct: 1  METVISSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAG 60

[Close]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL
Match: A0A4S8I4K4 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17950 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 44/72 (61.11%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 8  MRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAG 57
          M TVISSTVDIVEAQSKY                       ECERLPFDLPEAEEELVAG
Sbjct: 1  METVISSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAG 60

[Close]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL
Match: A0A4Y7JV54 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_025677 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 53/137 (38.69%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 65
           I +   +SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 154 IPLTPCVSSTVDIVEAQSKYGFWGWNLWRQPIGFAVFVISSLAECERLPFDLPEAEEELV 213

Query: 66  AGYQTEYS-------------------------------------------------ATR 70
           AGYQTEYS                                                  TR
Sbjct: 214 AGYQTEYSVLYLGGWNLSLPYIFLPHFEISEVGGVFGMTIGIFITLAKAYLFLFIPITTR 273

[Close]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL
Match: A0A4Y7IXU2 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_021002 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 53/137 (38.69%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 65
           I +   +SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 27  IPLTPCVSSTVDIVEAQSKYGFWGWNLWRQPIGFAVFVISSLAECERLPFDLPEAEEELV 86

Query: 66  AGYQTEYS-------------------------------------------------ATR 70
           AGYQTEYS                                                  TR
Sbjct: 87  AGYQTEYSVLYLGGWNLSLPYIFLPHFEISEVGGVFGMTIGIFITLAKAYLFLFIPITTR 146

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: KVH87822.1 (NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MYGSVIAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEA 57
          MYGSVI M TVI ST+DIVEAQSKY                       ECERLPFDLPEA
Sbjct: 1  MYGSVIGMGTVILSTIDIVEAQSKYAFWGWNLWRQLIGFFVFLISSLAECERLPFDLPEA 60

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: THU42127.1 (hypothetical protein C4D60_Mb00t13160 [Musa balbisiana] >THU42428.1 hypothetical protein C4D60_Mb00t16810 [Musa balbisiana] >THU42489.1 hypothetical protein C4D60_Mb00t10860 [Musa balbisiana] >THU42526.1 hypothetical protein C4D60_Mb00t19020 [Musa balbisiana] >THU42553.1 hypothetical protein C4D60_Mb00t09100 [Musa balbisiana])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 44/72 (61.11%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 8  MRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAG 57
          M TVISSTVDIVEAQSKY                       ECERLPFDLPEAEEELVAG
Sbjct: 1  METVISSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAG 60

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: THU42787.1 (hypothetical protein C4D60_Mb00t17950 [Musa balbisiana])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 44/72 (61.11%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 8  MRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAG 57
          M TVISSTVDIVEAQSKY                       ECERLPFDLPEAEEELVAG
Sbjct: 1  METVISSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAG 60

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: RZC63930.1 (hypothetical protein C5167_025677 [Papaver somniferum])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 53/137 (38.69%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 65
           I +   +SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 154 IPLTPCVSSTVDIVEAQSKYGFWGWNLWRQPIGFAVFVISSLAECERLPFDLPEAEEELV 213

Query: 66  AGYQTEYS-------------------------------------------------ATR 70
           AGYQTEYS                                                  TR
Sbjct: 214 AGYQTEYSVLYLGGWNLSLPYIFLPHFEISEVGGVFGMTIGIFITLAKAYLFLFIPITTR 273

[Close]

BLAST of CSPI07G08620 vs. NCBI nr
Match: RZC52571.1 (hypothetical protein C5167_021002 [Papaver somniferum])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 53/137 (38.69%), Postives = 57/137 (41.61%), Query Frame = 0


Query: 6   IAMRTVISSTVDIVEAQSKY-----------------------ECERLPFDLPEAEEELV 65
           I +   +SSTVDIVEAQSKY                       ECERLPFDLPEAEEELV
Sbjct: 27  IPLTPCVSSTVDIVEAQSKYGFWGWNLWRQPIGFAVFVISSLAECERLPFDLPEAEEELV 86

Query: 66  AGYQTEYS-------------------------------------------------ATR 70
           AGYQTEYS                                                  TR
Sbjct: 87  AGYQTEYSVLYLGGWNLSLPYIFLPHFEISEVGGVFGMTIGIFITLAKAYLFLFIPITTR 146

[Close]

BLAST of CSPI07G08620 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 37/66 (56.06%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 14  STVDIVEAQSKY-----------------------ECERLPFDLPEAEEELVAGYQTEYS 57
           STVDIVEAQSKY                       ECERLPFDLPEAEEEL+AGYQTEYS
Sbjct: 190 STVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249

[Close]

BLAST of CSPI07G08620 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04
Identity = 18/26 (69.23%), Postives = 19/26 (73.08%), Query Frame = 0


Query: 26  ECERLPFDLPEAEEELVAGYQTEYSA 52
           E  R PFDLPEAE E VAGY  EYS+
Sbjct: 197 ETNRAPFDLPEAEAESVAGYNVEYSS 222

[Close]

BLAST of CSPI07G08620 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04
Identity = 18/26 (69.23%), Postives = 19/26 (73.08%), Query Frame = 0


Query: 26  ECERLPFDLPEAEEELVAGYQTEYSA 52
           E  R PFDLPEAE E VAGY  EYS+
Sbjct: 197 ETNRAPFDLPEAEAESVAGYNVEYSS 222

[Close]

BLAST of CSPI07G08620 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 40.0 bits (92), Expect = 9.8e-04
Identity = 18/26 (69.23%), Postives = 19/26 (73.08%), Query Frame = 0


Query: 26  ECERLPFDLPEAEEELVAGYQTEYSA 52
           E  R PFDLPEAE E VAGY  EYS+
Sbjct: 197 ETNRAPFDLPEAEAESVAGYNVEYSS 222

The following BLAST results are available for this feature:

BLAST of CSPI07G08620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1EA64	4.7e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera ...	[more]
A1E9X9	4.7e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor OX=45...	[more]
Q3V4X9	6.2e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Acorus calamus OX=446...	[more]
Q8S8U5	6.2e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna OX=...	[more]
Q7YJS9	6.2e-11	54.05	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus ...	[more]

BLAST of CSPI07G08620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A124SAL1	9.9e-12	56.96	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H (Fragm...	[more]
A0A4S8I551	1.1e-10	61.11	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t01280 PE=3 SV=...	[more]
A0A4S8I4K4	1.1e-10	61.11	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t17950 PE=3 SV=...	[more]
A0A4Y7JV54	9.3e-10	38.69	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_025677 PE=3 SV=1	[more]
A0A4Y7IXU2	9.3e-10	38.69	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_021002 PE=3 SV=1	[more]

BLAST of CSPI07G08620 vs. NCBI nr


Match Name	E-value	Identity	Description
KVH87822.1	2.0e-11	56.96	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H, parti...	[more]
THU42127.1	2.3e-10	61.11	hypothetical protein C4D60_Mb00t13160 [Musa balbisiana] >THU42428.1 hypothetical...	[more]
THU42787.1	2.3e-10	61.11	hypothetical protein C4D60_Mb00t17950 [Musa balbisiana]	[more]
RZC63930.1	1.9e-09	38.69	hypothetical protein C5167_025677 [Papaver somniferum]	[more]
RZC52571.1	1.9e-09	38.69	hypothetical protein C5167_021002 [Papaver somniferum]	[more]

BLAST of CSPI07G08620 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	1.7e-11	56.06	NADH dehydrogenase family protein	[more]
ATMG01120.1	9.8e-04	69.23	NADH dehydrogenase 1B	[more]
ATMG00516.1	9.8e-04	69.23	NADH dehydrogenase 1C	[more]
ATMG01275.1	9.8e-04	69.23	NADH dehydrogenase 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 24..56 e-value: 9.8E-12 score: 44.8
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 10..51
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00668	COMPLEX1_ND1_2	coord: 31..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08620.1	CSPI07G08620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane