CSPI07G08220 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G08220
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr7: 5976312 .. 5979516 (-)
RNA-Seq Expression	CSPI07G08220
Synteny	CSPI07G08220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAGTAATCTTTTGACTACTTTAACTTCCATGAGGTATAAGGACAATGGAAACATAAGGGAGTAAGTTACAAAAATGTCTAATCTCGCTCGTAAATTAAAGACACTTGATATCAAAATAAATGAAAATTTACTCGTACATCTAGTACTTATCTCTCTTGCTGTACAATTCACTCAATTTAAGATAAGTTATAATACTCTGAAAGATAAATGGAGTATTAATGAGCTTATCTCAAAATGTGTGCAATAAGAAGATAGGATTAAGAGAGAAATGATAGAAAGTGCTCATAACTAACTTTTATTGTAAGAAGAAAAGAAAACATATAGATATGTTGTAGAAGGGACATCTAAGCAAAAAAAAGAAACAAGCTACAGAGAATCCTTGTTTCTTCTGCAAAGAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGGTACTTGGTGGGTAGATTATGGTGATACTACTCACATAAGTATATCCATGTAAGGTTGCCTATAGAGCCAATCGCCAAATAATGTTGAAAGATTCATCTACGTGGGCGATGGCAAAGCAGTTCCAATTGAAGTTATTGACAATTTTTTACATTACTTTTAAAAATTGTTTGCTTTTTGGATTTGAACGAGACTTTTATTGTATCGTCATTTAGACGAAACTTCGTTTTTATTTCCAGTTCGAACAAGTTTGGTTTTTCTTGTTCTTTTGAAAATAATAGAGTTCGTCTTTTTCAAAATCAAGCTTATTGGTATTAGTTCTTTAATTGATAACATATACATGCTTAATTCTTATGCTTCATCTAACAAGGTTTTGTTGTCTAAATAATGTGGTACGAAGTGTAAATTAAATGAGAATGTTGGCTATGTTGTGGCACAATCGTTTAGGTCACATCTCTAAACATAGAATTTAGAAACTTATGTCCGATGAAATTCTTAATTCCCTTGATTTAAGCAAATTTGAAGTTTGTGTGAAATTTATTAAGGAAAACATAAAAATATAAGAAAATTAAGTGCAAACAGATGTTTAGGCGTCTTAGAACTAATACATACAGACATTTATGGCCCATTCCCTATGGCTTCTTGGAATAGACAACAATACTCGTTTATAGACGACTATTCAAAATATGGGTACCTATATTTAATTCATGAGAAGTTTCAATCTTTGGACGTTTTCAAGTCTTTTAAAGCTAAAGTGGAATTTCACCTTGGAAAGAAAATTAAGGTTGTCAAGTCTGATCGTGGTGGTCAATACTACGGTAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGTGAAATAGAATACTTAAGGATATGGTAAAGAAGTATGATTAGTCATTCTTCTTTACCAGAACCTCTATGGTGTGAGGCATTAGAGATGTATATCCTCAACAGGGTACCTAGAAAGCAGTAGCTAAAACCCCTTATGAGTTATAGACAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGTGAAGATAGAATAAAGAAATTTGTCTTGGAAGAGAAGTTAGTTTCTCTTTCTAATGTGGGCATAGATGATGTTTAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAAATTTCATATGATTATTTGTGTTTCTTCAAGAACATTAAGATTAAGATGATATGGGCATAATGGAAGATGATCCAATCAACTTCCAACAAGCTTTACAAACCTCTAACTCTAAAAAATGGATAAATACTATGGATGGGGAAATAAAATCCATGAAAGACAATGATGTTTGGAAACTTTTCGAATTGCCATCAGGAGTGAAACCCATAGGTTATAATTAAATGGATATTTAAAACCAAAAGGAATTCACAAGTAAAAATTGAAAGGAATAAAGCTCGTCTTCTAGGAAAGGGTTTTACTCAAAAGGAAGACATTGATTACAAAGAGACTTTCTCTCCAGTTTTATCGAAAGACTCTTTGTAGGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGGTACAACCAAAAAACTTTGTAACTAATAATTCAAAGTCTATGGTATGCAAATTTGAAGAAATCTATCTATGGTTTCAAACAAACCTCTCATCAATGGTATCACAAATTTCATGAAGTAATTACTTCCTTTGATTTTGAGGTGAATATAGTGAAAGATACATATCACAAGTTCGGTCAGAGTAAATCTATTTTTCTGGTGTTATATGTTGATGATATACTCATACCAAGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA

mRNA sequence

ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA

Coding sequence (CDS)

ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA

Protein sequence

MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCFVEIEKYFAKNGKGEAKKGLLKKDCLKYAKWHVSLAYVPTDIMDQGEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTKENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVEFEAPILDFTIKPIIEQDNNKVLVEPKVQTRQPQEVPLEKKEVIMALVAHLDLELHQMDVKTVFLNENIVQTIYMTPSNDVSLLYDIKRLLKKNFEIKDLEYGSFVTTRIWEIRHLYKNSSRKPLLTLDAPSGRCRACYVREAIFDSQTRTSRMSYPRRHQCQRMVDVDSGLRSMSPPYIIS*

Homology

[Close]

BLAST of CSPI07G08220 vs. ExPASy TrEMBL
Match: A0A438KDT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3003 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-28
Identity = 146/471 (31.00%), Postives = 195/471 (41.40%), Query Frame = 0


Query: 1   MDLDLALRIDKP-----TSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESEN 60
           MDLD ALR ++P      ST EQ +T  +EKWE SNCM+LMI++HSIPE+ R +I E   
Sbjct: 36  MDLDYALRENRPLDLTSASTVEQRST--MEKWERSNCMSLMIMKHSIPEAIRSAIPEETR 95

Query: 61  AKKCFVEIEKYFAKNGKGEAKKGLLKKDCLKY----------AKWHVSL-------AYVP 120
           AK    +I   FA N K E    +LK + +            A  H+S+       + +P
Sbjct: 96  AKAFLDQIANRFAANEKVETNT-ILKINLVVVPIDTWWIDTGATTHISVTMQDCLRSRMP 155

Query: 121 TD------------------------------IMDQG-----------EQRLGPFAKYLE 180
           TD                                D+G           EQ LGPFAKYL 
Sbjct: 156 TDDERYIYVGNGNEAAIKAIGLFRLYKKIKVVRSDRGSEYYGRYDGSDEQHLGPFAKYLM 215

Query: 181 KCGIVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTKENWTQELLAVILL 240
           +CGIV QYTMP  PS NGVA+R+   +  +     V+ R       ++      ++   +
Sbjct: 216 ECGIVPQYTMPGTPSQNGVAERQNRTLKDMGCP--VEAR--PYKPNEKKLDSRTMSCYFV 275

Query: 241 GILRISPSFKFYDPTSRSFFETENARFLEDVEFEA--PILDFTIKPIIEQDNNKV----L 300
           G    S  FKFYD ++R FFET NA+F+EDVE     P+     K    QD  K+    +
Sbjct: 276 GYSERSRGFKFYDSSTRFFFETGNAKFIEDVELSGREPLRKSITK---IQDTPKIPPAQI 335

Query: 301 VEP----KVQTRQPQE----VPLEKKE--------------------------------- 320
           +EP    +  T+QPQE    VPL +                                   
Sbjct: 336 MEPIQVHEEVTQQPQEPQVQVPLRRSTRERRSTISDDYVVYLQEHEFDMGLENDPILVNQ 395

[Close]

BLAST of CSPI07G08220 vs. ExPASy TrEMBL
Match: A0A5A7U9T3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G001050 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-28
Identity = 83/152 (54.61%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 105 GEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRK--------EDLVLAISTSEVVQLR 164
           G+QR GPFAKYLE+CGIV QY MP KPSMNGV +R+          LVL I TS VVQLR
Sbjct: 166 GQQRSGPFAKYLEECGIVPQYIMPRKPSMNGVVERRNRTLKDMERSLVLGIFTSGVVQLR 225

Query: 165 LGLIGLTKENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVEFEAPILD 224
           L L GLTKENWTQELLA ILLG  +I                  N   ++DV  + PI D
Sbjct: 226 LCLTGLTKENWTQELLAAILLGEDKIKKVV-----LEEKLISLPNGA-IDDV--QTPIHD 285

Query: 225 FTIKPIIEQDNNKVLVEPKVQTRQPQEVPLEK 249
           FT++P IEQDNN+VL   +VQT+Q QE+PL +
Sbjct: 286 FTMEPTIEQDNNEVL---EVQTQQSQEMPLRR 306

[Close]

BLAST of CSPI07G08220 vs. ExPASy TrEMBL
Match: A0A5D3BE89 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00130 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-28
Identity = 83/152 (54.61%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 105 GEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRK--------EDLVLAISTSEVVQLR 164
           G+QR GPFAKYLE+CGIV QY MP KPSMNGV +R+          LVL I TS VVQLR
Sbjct: 157 GQQRSGPFAKYLEECGIVPQYIMPRKPSMNGVVERRNRTLKDMERSLVLGIFTSGVVQLR 216

Query: 165 LGLIGLTKENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVEFEAPILD 224
           L L GLTKENWTQELLA ILLG  +I                  N   ++DV  + PI D
Sbjct: 217 LCLTGLTKENWTQELLAAILLGEDKIKKVV-----LEEKLISLPNGA-IDDV--QTPIHD 276

Query: 225 FTIKPIIEQDNNKVLVEPKVQTRQPQEVPLEK 249
           FT++P IEQDNN+VL   +VQT+Q QE+PL +
Sbjct: 277 FTMEPTIEQDNNEVL---EVQTQQSQEMPLRR 297

[Close]

BLAST of CSPI07G08220 vs. ExPASy TrEMBL
Match: A0A438IFS9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_578 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 141/507 (27.81%), Postives = 186/507 (36.69%), Query Frame = 0


Query: 1   MDLDLALRIDKP---TSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAK 60
           MDLD ALR D+P   TS       + +EKWE SN M+LMI++HSIPE+ RG + E   AK
Sbjct: 1   MDLDYALREDRPLDLTSASTAEQRSAMEKWERSNRMSLMIMKHSIPEAIRGEMPEETQAK 60

Query: 61  KCFVEIEKYFAKNGKGE------------------------------------------- 120
               +IE  FA N K E                                           
Sbjct: 61  TFLDQIENRFAANEKVEKNTILSKLVSMRYKGKENIRDYIMEMSNLVTRLKALKLELSED 120

Query: 121 -------------------------------------------------------AKKGL 180
                                                                   K G 
Sbjct: 121 ILVHLVLISLPTQFSPFKISYNTQKEKWTLNELIAQTSKQKVQKKQDKKITCFFCKKAGH 180

Query: 181 LKKDCLKYAKWHVSLAYVPTDIMDQ-------------------GEQRLGPFAKYLEKCG 240
           +KK C KY  WH   A V   +  +                   GEQR  PFAKYL +CG
Sbjct: 181 MKKTCTKYDVWHEKKAEVENQLSKKIKAVRSDHGREYYGRYDRSGEQRPRPFAKYLMECG 240

Query: 241 IVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTKENWTQELLAVILLGIL 300
           IV QYTM    S NGV +R+       +  ++V+  +    L +  W + +   +   IL
Sbjct: 241 IVPQYTMSGTLSQNGVVERRN-----CNLKDMVRSMINHSTLAESLWGEAVKTTVY--IL 300

Query: 301 RISPS------------------------FKFYDPTSRSFFETENARFLEDVE------- 308
              PS                        FKFYDP++RSFFET N +F+EDVE       
Sbjct: 301 NKVPSKAVAKTPYELWTSKKPRYSKKSRGFKFYDPSTRSFFETGNTKFIEDVELSGRESL 360

[Close]

BLAST of CSPI07G08220 vs. ExPASy TrEMBL
Match: A0A151RFD4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_037529 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-27
Identity = 118/390 (30.26%), Postives = 164/390 (42.05%), Query Frame = 0


Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLA R++KPT T E L+   +EKWE SN M LMI++ S+PE F+GSI+ES+N K   
Sbjct: 21  MDLDLAFRVEKPTPTPENLDEDKVEKWERSNRMCLMIMKRSVPEVFQGSISESQNDKGFL 80

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY------------------------------AKW 120
             +E YF  N K +A++   K   ++Y                                 
Sbjct: 81  DAVEHYFTSNEKADARRLFAKLISMRYKGKGNIRDYIMEMSNLASKLKALKLELSDDLLV 140

Query: 121 HVSLAYVPTDI--------------------------MDQGEQRLGPFAKYLEKCGIVSQ 180
           H+ L  +PT                             ++ ++     A +L +CGI  Q
Sbjct: 141 HLFLISLPTQFGQFKVSYNTQKDKWTLNELISHYVQEEERQQREKTELALFLRECGIAPQ 200

Query: 181 YTMPEKPSMNGVAKRK----EDLVL---------------AISTSEVVQLRLGLIGLTK- 240
           YTMP KPSMNGVA+R+    +D+V                A+ T+  +  R+    + K 
Sbjct: 201 YTMPGKPSMNGVAERRNRTLKDMVRSMISHSSLPESLWGEALKTAVYILNRVPSKAVNKT 260

Query: 241 --ENWT-----------------------------QELLAVILLGILRISPSFKFYDPTS 249
             E WT                                ++   +G    S  +KFY+PT+
Sbjct: 261 PYELWTGKRPSLKHLHIWGCPAEARPYRPHESKLESRTVSCYFVGYPERSRGYKFYNPTT 320

[Close]

BLAST of CSPI07G08220 vs. NCBI nr
Match: RVX19364.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-28
Identity = 146/471 (31.00%), Postives = 195/471 (41.40%), Query Frame = 0


Query: 1   MDLDLALRIDKP-----TSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESEN 60
           MDLD ALR ++P      ST EQ +T  +EKWE SNCM+LMI++HSIPE+ R +I E   
Sbjct: 36  MDLDYALRENRPLDLTSASTVEQRST--MEKWERSNCMSLMIMKHSIPEAIRSAIPEETR 95

Query: 61  AKKCFVEIEKYFAKNGKGEAKKGLLKKDCLKY----------AKWHVSL-------AYVP 120
           AK    +I   FA N K E    +LK + +            A  H+S+       + +P
Sbjct: 96  AKAFLDQIANRFAANEKVETNT-ILKINLVVVPIDTWWIDTGATTHISVTMQDCLRSRMP 155

Query: 121 TD------------------------------IMDQG-----------EQRLGPFAKYLE 180
           TD                                D+G           EQ LGPFAKYL 
Sbjct: 156 TDDERYIYVGNGNEAAIKAIGLFRLYKKIKVVRSDRGSEYYGRYDGSDEQHLGPFAKYLM 215

Query: 181 KCGIVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTKENWTQELLAVILL 240
           +CGIV QYTMP  PS NGVA+R+   +  +     V+ R       ++      ++   +
Sbjct: 216 ECGIVPQYTMPGTPSQNGVAERQNRTLKDMGCP--VEAR--PYKPNEKKLDSRTMSCYFV 275

Query: 241 GILRISPSFKFYDPTSRSFFETENARFLEDVEFEA--PILDFTIKPIIEQDNNKV----L 300
           G    S  FKFYD ++R FFET NA+F+EDVE     P+     K    QD  K+    +
Sbjct: 276 GYSERSRGFKFYDSSTRFFFETGNAKFIEDVELSGREPLRKSITK---IQDTPKIPPAQI 335

Query: 301 VEP----KVQTRQPQE----VPLEKKE--------------------------------- 320
           +EP    +  T+QPQE    VPL +                                   
Sbjct: 336 MEPIQVHEEVTQQPQEPQVQVPLRRSTRERRSTISDDYVVYLQEHEFDMGLENDPILVNQ 395

[Close]

BLAST of CSPI07G08220 vs. NCBI nr
Match: KAA0052114.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-27
Identity = 83/152 (54.61%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 105 GEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRK--------EDLVLAISTSEVVQLR 164
           G+QR GPFAKYLE+CGIV QY MP KPSMNGV +R+          LVL I TS VVQLR
Sbjct: 166 GQQRSGPFAKYLEECGIVPQYIMPRKPSMNGVVERRNRTLKDMERSLVLGIFTSGVVQLR 225

Query: 165 LGLIGLTKENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVEFEAPILD 224
           L L GLTKENWTQELLA ILLG  +I                  N   ++DV  + PI D
Sbjct: 226 LCLTGLTKENWTQELLAAILLGEDKIKKVV-----LEEKLISLPNGA-IDDV--QTPIHD 285

Query: 225 FTIKPIIEQDNNKVLVEPKVQTRQPQEVPLEK 249
           FT++P IEQDNN+VL   +VQT+Q QE+PL +
Sbjct: 286 FTMEPTIEQDNNEVL---EVQTQQSQEMPLRR 306

[Close]

BLAST of CSPI07G08220 vs. NCBI nr
Match: TYJ98082.1 (uncharacterized protein E5676_scaffold565G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-27
Identity = 83/152 (54.61%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 105 GEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRK--------EDLVLAISTSEVVQLR 164
           G+QR GPFAKYLE+CGIV QY MP KPSMNGV +R+          LVL I TS VVQLR
Sbjct: 157 GQQRSGPFAKYLEECGIVPQYIMPRKPSMNGVVERRNRTLKDMERSLVLGIFTSGVVQLR 216

Query: 165 LGLIGLTKENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVEFEAPILD 224
           L L GLTKENWTQELLA ILLG  +I                  N   ++DV  + PI D
Sbjct: 217 LCLTGLTKENWTQELLAAILLGEDKIKKVV-----LEEKLISLPNGA-IDDV--QTPIHD 276

Query: 225 FTIKPIIEQDNNKVLVEPKVQTRQPQEVPLEK 249
           FT++P IEQDNN+VL   +VQT+Q QE+PL +
Sbjct: 277 FTMEPTIEQDNNEVL---EVQTQQSQEMPLRR 297

[Close]

BLAST of CSPI07G08220 vs. NCBI nr
Match: RVW95606.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-27
Identity = 141/507 (27.81%), Postives = 186/507 (36.69%), Query Frame = 0


Query: 1   MDLDLALRIDKP---TSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAK 60
           MDLD ALR D+P   TS       + +EKWE SN M+LMI++HSIPE+ RG + E   AK
Sbjct: 1   MDLDYALREDRPLDLTSASTAEQRSAMEKWERSNRMSLMIMKHSIPEAIRGEMPEETQAK 60

Query: 61  KCFVEIEKYFAKNGKGE------------------------------------------- 120
               +IE  FA N K E                                           
Sbjct: 61  TFLDQIENRFAANEKVEKNTILSKLVSMRYKGKENIRDYIMEMSNLVTRLKALKLELSED 120

Query: 121 -------------------------------------------------------AKKGL 180
                                                                   K G 
Sbjct: 121 ILVHLVLISLPTQFSPFKISYNTQKEKWTLNELIAQTSKQKVQKKQDKKITCFFCKKAGH 180

Query: 181 LKKDCLKYAKWHVSLAYVPTDIMDQ-------------------GEQRLGPFAKYLEKCG 240
           +KK C KY  WH   A V   +  +                   GEQR  PFAKYL +CG
Sbjct: 181 MKKTCTKYDVWHEKKAEVENQLSKKIKAVRSDHGREYYGRYDRSGEQRPRPFAKYLMECG 240

Query: 241 IVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTKENWTQELLAVILLGIL 300
           IV QYTM    S NGV +R+       +  ++V+  +    L +  W + +   +   IL
Sbjct: 241 IVPQYTMSGTLSQNGVVERRN-----CNLKDMVRSMINHSTLAESLWGEAVKTTVY--IL 300

Query: 301 RISPS------------------------FKFYDPTSRSFFETENARFLEDVE------- 308
              PS                        FKFYDP++RSFFET N +F+EDVE       
Sbjct: 301 NKVPSKAVAKTPYELWTSKKPRYSKKSRGFKFYDPSTRSFFETGNTKFIEDVELSGRESL 360

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BLAST of CSPI07G08220 vs. NCBI nr
Match: KYP41105.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-26
Identity = 118/390 (30.26%), Postives = 164/390 (42.05%), Query Frame = 0


Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLA R++KPT T E L+   +EKWE SN M LMI++ S+PE F+GSI+ES+N K   
Sbjct: 21  MDLDLAFRVEKPTPTPENLDEDKVEKWERSNRMCLMIMKRSVPEVFQGSISESQNDKGFL 80

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY------------------------------AKW 120
             +E YF  N K +A++   K   ++Y                                 
Sbjct: 81  DAVEHYFTSNEKADARRLFAKLISMRYKGKGNIRDYIMEMSNLASKLKALKLELSDDLLV 140

Query: 121 HVSLAYVPTDI--------------------------MDQGEQRLGPFAKYLEKCGIVSQ 180
           H+ L  +PT                             ++ ++     A +L +CGI  Q
Sbjct: 141 HLFLISLPTQFGQFKVSYNTQKDKWTLNELISHYVQEEERQQREKTELALFLRECGIAPQ 200

Query: 181 YTMPEKPSMNGVAKRK----EDLVL---------------AISTSEVVQLRLGLIGLTK- 240
           YTMP KPSMNGVA+R+    +D+V                A+ T+  +  R+    + K 
Sbjct: 201 YTMPGKPSMNGVAERRNRTLKDMVRSMISHSSLPESLWGEALKTAVYILNRVPSKAVNKT 260

Query: 241 --ENWT-----------------------------QELLAVILLGILRISPSFKFYDPTS 249
             E WT                                ++   +G    S  +KFY+PT+
Sbjct: 261 PYELWTGKRPSLKHLHIWGCPAEARPYRPHESKLESRTVSCYFVGYPERSRGYKFYNPTT 320

The following BLAST results are available for this feature:

BLAST of CSPI07G08220 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G08220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438KDT7	1.2e-28	31.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A5A7U9T3	7.7e-28	54.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BE89	7.7e-28	54.61	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A438IFS9	1.3e-27	27.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A151RFD4	5.0e-27	30.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of CSPI07G08220 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX19364.1	2.5e-28	31.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAA0052114.1	1.6e-27	54.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ98082.1	1.6e-27	54.61	uncharacterized protein E5676_scaffold565G00130 [Cucumis melo var. makuwa]	[more]
RVW95606.1	2.7e-27	27.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KYP41105.1	1.0e-26	30.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

BLAST of CSPI07G08220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF3	TRANSMEMBRANE PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G08220.1	CSPI07G08220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding