CSPI07G07540 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G07540
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S16
LocationChr7: 5387587 .. 5388675 (+)
RNA-Seq ExpressionCSPI07G07540
SyntenyCSPI07G07540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTGGAGGTGATGAATTGGGCCGGACACTAAAAAATGCGGCCCAATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCCCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGAATCGTTTATCCATTTTGGAAAAGACTTTGTGGTGCTGGATTTTTGCTGCTTTTCTTCTTTTATGCGTTTGAATTTACAAAGTTGTTTTTTGTGTTTAACTGTTCTATCTATTTTCTCATAAAATTAGATTTTTTGTCCTAATGGTTTAGACTCGTTTGCTATTATATTACTCGGTATCGGAATACTTTTAGTTAATTGGAAACCTGGATTTAGAATAGCATCATGAATGAATGGCATTGCTTATCTTTAGAATAGCATTCTGGCAATTTTAAGTGTTAGGTGAATGAAGTTCTTGATTAAGCGGTTAGTTTTAGTTGGAAAACTCTTGAGTTGTGTGTGTGATTTCATGGCACATCTCTGTTTCATTGATTATACAACCATTGTGCCTGATCGATACTTTTGTTTCACAGTTCATTCTTTTGCATATGTATTTGATTATTACTTCGTTCTATTTGTGTTGGG

mRNA sequence

GGCTGGAGGTGATGAATTGGGCCGGACACTAAAAAATGCGGCCCAATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCCCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGAATCGTTTATCCATTTTGGAAAAGACTTTGTGGTGCTGGATTTTTGCTGCTTTTCTTCTTTTATGCGTTTGAATTTACAAAGTTGTTTTTTGTGTTTAACTGTTCTATCTATTTTCTCATAAAATTAGATTTTTTGTCCTAATGGTTTAGACTCGTTTGCTATTATATTACTCGGTATCGGAATACTTTTAGTTAATTGGAAACCTGGATTTAGAATAGCATCATGAATGAATGGCATTGCTTATCTTTAGAATAGCATTCTGGCAATTTTAAGTGTTAGGTGAATGAAGTTCTTGATTAAGCGGTTAGTTTTAGTTGGAAAACTCTTGAGTTGTGTGTGTGATTTCATGGCACATCTCTGTTTCATTGATTATACAACCATTGTGCCTGATCGATACTTTTGTTTCACAGTTCATTCTTTTGCATATGTATTTGATTATTACTTCGTTCTATTTGTGTTGGG

Coding sequence (CDS)

ATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCCCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGA

Protein sequence

MYDKTLILTFHINSAFQFCPSSTLTTSSPSEFRVCSSSRQAEPGKRKSIMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR*
Homology
[Close]
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-72
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0 

Query: 54  IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 113
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 114 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 173
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 174 CEPKKFGGRGARARFQKSYR 194
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 0 

Query: 50  MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 109
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 110 RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 169
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 170 ADPRRCEPKKFGGRGARARFQKSYR 194
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.9e-66
Identity = 122/142 (85.92%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 52  APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 111
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 112 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 171
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 172 RRCEPKKFGGRGARARFQKSYR 194
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match: A0A6J1D637 (40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match: A0A6J1FW85 (40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 6.3e-102
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0 

Query: 1   MYDKTLILTFHINSAFQFCPSSTLTTSSPSEFRVCSSSRQAEPGKRKSIMAAPIESVQCF 60
           MYDKTLILTFHINSAFQFCPSSTLTTSS SEFRVCSSSRQAEPGKRKSIMAAPIESVQCF
Sbjct: 1   MYDKTLILTFHINSAFQFCPSSTLTTSSLSEFRVCSSSRQAEPGKRKSIMAAPIESVQCF 60

Query: 61  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK 120
           GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK
Sbjct: 61  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK 120

Query: 121 GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 180
           GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG
Sbjct: 121 GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 180

Query: 181 GRGARARFQKSYR 194
           GRGARARFQKSYR
Sbjct: 181 GRGARARFQKSYR 193

[Close]
BLAST of CSPI07G07540 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 6.6e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 290.8 bits (743), Expect = 8.6e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 1.5e-74
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. NCBI nr
Match: XP_040987369.1 (40S ribosomal protein S16 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 289.7 bits (740), Expect = 1.9e-74
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]
BLAST of CSPI07G07540 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-69
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of CSPI07G07540 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]
BLAST of CSPI07G07540 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]
BLAST of CSPI07G07540 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKF 180
           E  +F
Sbjct: 128 ELFRF 132

[Close]
BLAST of CSPI07G07540 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 163
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:
BLAST of CSPI07G07540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462935.4e-7296.4340S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1[more]
O226471.3e-6888.2840S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1[more]
Q9SK221.6e-6889.2140S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1[more]
Q423402.1e-6888.4940S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1[more]
Q9XEK79.9e-6685.9240S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1[more]
BLAST of CSPI07G07540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J7813.2e-75100.0040S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ... [more]
A0A0A0L6F63.2e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1[more]
A0A1S3C2103.2e-75100.0040S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1[more]
A0A6J1D6373.2e-75100.0040S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV... [more]
A0A6J1FW853.2e-75100.0040S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=... [more]
BLAST of CSPI07G07540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645860.16.3e-10299.48hypothetical protein Csa_017052 [Cucumis sativus][more]
XP_004136973.16.6e-75100.0040S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei... [more]
XP_022149351.18.6e-7599.3140S ribosomal protein S16-like [Momordica charantia][more]
XP_022989000.11.5e-7499.3140S ribosomal protein S16-like [Cucurbita maxima][more]
XP_040987369.11.9e-7498.6140S ribosomal protein S16 [Juglans microcarpa x Juglans regia][more]
BLAST of CSPI07G07540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G09990.11.2e-6989.21Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.11.5e-6988.49Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G04230.11.3e-6584.89Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.21.4e-5986.40Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.31.2e-5086.11Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 61..193
e-value: 7.1E-31
score: 107.2
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 42..193
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 46..193
e-value: 3.6E-54
score: 184.9
NoneNo IPR availablePANTHERPTHR21569:SF28SUBFAMILY NOT NAMEDcoord: 42..193
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 121..139
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 56..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G07540.1CSPI07G07540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0032259 methylation
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0042409 caffeoyl-CoA O-methyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome