CSPI07G06730 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G06730
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	Chr7: 4899340 .. 4902773 (-)
RNA-Seq Expression	CSPI07G06730
Synteny	CSPI07G06730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTATGTATAAGTAATTCTAAAATTGCTTCATCCTTTCGAACAACAAACAAAATCACCTGAGCCCGTAAACTACTCTTTCTTCTTCAACAACTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGTCCATTTTGATTTCTCTTCCCATCTATTCATCTTTTTTTCCTGTGTTTTTGTTCTTAATTTGCTCGATTAACTTCCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGACGACGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTACGAGCTTAATCGTTGATTTTTTTTTTCTGCCTGTTTTGTTGTTGGTTTATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTTGAAATTTAGCCATTTTTAATGCTTTCCTTTGGTATTTCCACATGGATTTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACCTTAATTTTGGAGATGGAATTGTTATGACGCTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAAAGAAAAGAGATGTCTTATGCTTCTAATTGTTGGAAGAAGCTATTCAATGGCCTCCTCTGTAGTCATACTTTCTGATAGTCAGCAAATTCAATTGGTTTAATGTTAGAGCGTTAGAGTTTTTTTTTTTCCATCTTGAAGTTCCCTCCACAAGATATTTGTAATTGTTGCTTGTTGATAAGAGTCTCTTTGCAACTCCTTTAGTATTGCTGGTTCCATGGGCTAACTCCAACTCCAATATATGTTTTGATACCGAATCCACCTCATAAACAATCTCCATTTCTTATGAACAGTTGTGATGTATTTAGTTGCTTAATTAGTTGTTAATTGCCTACTATCTACTGGACTGGATTTTAGACACTCTTTGACTTGTTGAAAAGGTGATAGGTCACTTTTGACTTGTTGTAGTATAAATAATAGCTGTTATTATTTTTATTCCAGAATATTAATAAAAAATACCCAGATTTCTTGTTTCTGTGTTAATTCTCCAATAACACACCAAGTTGTGAACCAATCTTGTCATCAGAAAACTTTTTGAAACTGGCAAGTATCTGTAAATTAACGAAATATTCAGATTGATGGCCGTCCCGTCATTTACAGGGTTCTAGTAAGAATCTTCATATGGTTAAAAGTGAACTCAGGGACTGTTTGGCCCCTAGGCGAGGCGCATTGAGGATTAGTGCACCTCTTTGAGCTTCTTTTTTGACAATTCCCTTAAAACACAAATTTGGCTGCCGTTCAATATAAAATATAATATAGTTATTTTTTTTAGCCTAATTTGAAATAAAGCATCATTGTACAATTTATACCTATGGCTAAGATTGATCTAAAGTACAAACTGAAGCAGCAGATTTCTCCTATATCTTGGTGTTGAATGACTAATATTTAACTCTTATATATCTTTTTTTTTTTTGTCAAGTTTCATTTCTATCCATCTATTTTGTGGTTGTGTAAATAAACATGTATATAGTGTGTGTGTGTGTGTATGTATATTATTTCTTATACACCGTGTACCACACAAAAAAAAACTGCGCCTTTTTTTCCACCTTGCGCCTAGGCTTCAAAGGGCCATCGTGCCTTAGTGCATATTGGGCATTTTAAAACACTGGTTAGTTGATAAATGTGAACAATAGAGATAGAGAGAAAGATCGAGTTTCTTGATAATCATAAAAAATAGAAAACGAGGGAAAGGTGAAGCTACTCGATAAATGTGCACACTTCACTAAGTTGTTTAACCAAACAAATCCTAAATCCTAAACGTCAGTTAGCCGTCTTTGGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGCTGTGAATCAACTTCACTACCAGTCTATTGATGTGAATCAACTGAATTTGCTTGTGCTTGTAGACAGTTGACACTAAAATATCTGCTGGCAGGATGTGAGTAAGAAAAGTCATGTCTATATGACTGGAATTTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTGATCTTAGACATACGTTAGCTTTCTTTGGGGTTTTATTTACCAACACACTCAAATACTTGTGTTTTCGGAACATGACAAAATGAAAAAACCTGTATGGTATTTGTCTTTTATTTTCTGTCTTCTCAGAGCTAGTGAAAAGCGCTGGTCTGTTGATGTAGATTGGTTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTTCTGGTGTTCATAGACAGTAGGTCCCTCGGGAGACTGTTCTAAAAGGGTCTTGTATGGGAGGAATAAAGAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGAGAGATTTTTATTTAAAAACAAATTTGTTAATGCATTCTTGTTGAAGAAGTTCTCTTTGCCAGTTTCTTTACTATAATGGTGTCCTGTAAGTAGCTGAGGGTTTGACATGGAGTGGAATTTAAATGTTTTCTTTTCCCGTTTCTATTCTTTTCTCCTTTTTTTCGTTCATCGAGAGGGGTTGGTCAAATAAGGGATATTGAATGCTTGCTTTCTTTTGGATTTTCTTCCCTCTGGTTTTTTGGGTAATCTCTTGTAGGGTATTTATTTTATTTTTATTTTTCTACATGACATCATTCTCTTCTCTTCTATTTTCAATTTTCTCAACAATGTTATCCTTCCATTTAAAGGAAAAAAACAATTCTCCTTTTATGAAGATCGTACCTAATTTCCAAAGTTTTCTCCTTCGTTATTACTGTATTAGGACTATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGAATGCTTCAATCACTTAGCTACTTGCAAGCCACAAGGTTAGTGGACAACTCCCCACCACCACCACAAAA

mRNA sequence

AGAAATTATGTATAAGTAATTCTAAAATTGCTTCATCCTTTCGAACAACAAACAAAATCACCTGAGCCCGTAAACTACTCTTTCTTCTTCAACAACTGACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGACGACGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGAATGCTTCAATCACTTAGCTACTTGCAAGCCACAAGGTTAGTGGACAACTCCCCACCACCACCACAAAA

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTCTCCATTCCTCAATCTCAACTGCCATTTTCAACTTCTCCAACCTCGCTTCTTTCTCATCCTATCCATATTTCCTACACGCTCCTTCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGATCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATTGGTGGAGAGGAGGAGGAGGAGGAGGACGACGACGAAGATGAGGAGGACGAAGAGGATAGAAGTTTGGATCTGTTGGTTCGTTTTGTTGAGAATATTTTTAGGAAATCATCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCCATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTCATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGGACAACTCGATGATGATCAGCACCATGCCTGGACTGGTGCTCAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLGQLDDDQHHAWTGAQPAS*

Homology

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BLAST of CSPI07G06730 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-15
Identity = 64/176 (36.36%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDR 61
           +L +  S PSL  I  S    S +P S  S  +   +  L  +  +S+         DDR
Sbjct: 7   TLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDR 66

Query: 62  RNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 121
                 ++D++   +++   DD+DEEDE + S+DLL+RF+ ++F+K S+R +KA R +LP
Sbjct: 67  FFGGGDNYDVV--PDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILP 126

Query: 122 PSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 178
            ++  +LV+F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 127 AAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

[Close]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL
Match: A0A0A0K2W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.6e-101
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEE++DEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRLGQLDDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.9e-93
Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEE+++ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.5e-80
Identity = 166/205 (80.98%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQ P  TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGG  E++EDD+++E +EEDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGG--EDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL
Match: A0A6J1EIN7 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434609 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 165/205 (80.49%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQL   TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPHSQLRLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD++GG  E++EDD+++E +EEDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIMGG--EDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 167/207 (80.68%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQ--SQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFV 60
           MS PA LSPPSLFSIPQ   Q  FS+S TSLLSHP  IS+TLLRA+RR SNFSQGVDN V
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DDRRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKA 120
           DDRRNWNR   SDFD++GGE++EE+++DE E++EEDRSLDLLVRFVEN+FRK S+RARKA
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDE-EDEEEDRSLDLLVRFVENVFRKVSKRARKA 120

Query: 121 VRSVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILY 180
           VRSVLP SIPTKLV FSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILY
Sbjct: 121 VRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILY 180

Query: 181 LQDTRSHRLGQLDDDQHHAWTGAQPAS 203
           LQD RSHR  QLD++QHHAWTGAQPAS
Sbjct: 181 LQDIRSHRFDQLDNEQHHAWTGAQPAS 206

[Close]

BLAST of CSPI07G06730 vs. NCBI nr
Match: XP_004136931.2 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypothetical protein Csa_017135 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 7.3e-101
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEE++DEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRLGQLDDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of CSPI07G06730 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 186/202 (92.08%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEE+++ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLGQLDDDQHHAWTGAQPAS 203
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of CSPI07G06730 vs. NCBI nr
Match: XP_038877542.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-84
Identity = 178/205 (86.83%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSL A LSPPSLFSIPQSQ PF TS TSLLSHP  IS+TLLRA+RRTSNFSQGVDN VDD
Sbjct: 1   MSLSAALSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFDLIGG EEEE+DDDEDE++EEDRSLDLLVRFVEN+FRK SRRARKAVR
Sbjct: 61  RRNWNRSIGSDFDLIGG-EEEEDDDDEDEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVF+SILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFLSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           DTR+HRL QLDDDQH AWTGAQP S
Sbjct: 181 DTRTHRLDQLDDDQHRAWTGAQPVS 204

[Close]

BLAST of CSPI07G06730 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 9.3e-80
Identity = 166/205 (80.98%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQ P  TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGG  E++EDD+++E +EEDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGG--EDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of CSPI07G06730 vs. NCBI nr
Match: KAG6588721.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 166/205 (80.98%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60
           MSLPA LSPPSL+SIP SQL   TS TS+LSH + IS+TLLRA+RRTSNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPHSQLRLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGG  E++EDD+++E +EEDRSLDLLVRFVEN+FRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGG--EDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLP SIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLGQLDDDQHHAWTGAQPAS 203
           D RSHR  +LDDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of CSPI07G06730 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 108/199 (54.27%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 5   AVLSPPSLFSIPQSQLPFST-SPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDRRN 64
           ++ SP S  ++ +S L F   +P +L+     IS     A+RR+ +F  G D+F DD R+
Sbjct: 6   SISSPSSSVALLRSPLSFFIFTPKTLIFTRTRISGFPYLASRRSRDFINGRDDFADDTRS 65

Query: 65  WNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLPPS 124
           WNR      G +E+ + ++D+D+ +EEDRSLDLL+RFVEN+FRK S+RARKAVRS+LP S
Sbjct: 66  WNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRSILPVS 125

Query: 125 IPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHR 184
           I TKLV FSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q++R++R
Sbjct: 126 ISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQESRNNR 185

Query: 185 LGQLDDDQHHAWTGAQPAS 203
           + +L DD   AW G QP S
Sbjct: 186 INELADDP-RAWNGMQPVS 203

[Close]

BLAST of CSPI07G06730 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-16
Identity = 64/176 (36.36%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDDR 61
           +L +  S PSL  I  S    S +P S  S  +   +  L  +  +S+         DDR
Sbjct: 7   TLSSSSSSPSLTLINASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRRRYESDDR 66

Query: 62  RNWNRSDFDLIGGEEEEEEDDDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 121
                 ++D++   +++   DD+DEEDE + S+DLL+RF+ ++F+K S+R +KA R +LP
Sbjct: 67  FFGGGDNYDVV--PDDDGFSDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILP 126

Query: 122 PSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 178
            ++  +LV+F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 127 AAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of CSPI07G06730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	3.8e-15	36.36	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of CSPI07G06730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W4	3.6e-101	99.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
A0A1S3C0Q8	7.9e-93	92.08	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
A0A6J1JL13	4.5e-80	80.98	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EIN7	1.3e-79	80.49	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D3L5	1.5e-78	80.68	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CSPI07G06730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136931.2	7.3e-101	99.01	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypotheti...	[more]
XP_008455053.1	1.6e-92	92.08	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_038877542.1	1.3e-84	86.83	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]	[more]
XP_022988955.1	9.3e-80	80.98	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
KAG6588721.1	1.2e-79	80.98	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CSPI07G06730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	1.3e-47	54.27	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	2.7e-16	36.36	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 11..202
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 11..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G06730.1	CSPI07G06730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity