CSPI07G06360 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G06360
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type domain-containing protein
LocationChr7: 4683712 .. 4684314 (-)
RNA-Seq ExpressionCSPI07G06360
SyntenyCSPI07G06360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAAGAAATCATTGATACTTGTAGGTATGGTTACTACATGGTTTATGGGTATGTCACTAACAATTACCAATCCCCACCTACAGCGTCAACCACGAAACCAAATTCGTTTTCGACGCAACTCGCCAACATATATCAGACGAATGGACCTGAATTATTTCAAACTTCAACTCAGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGTGAACACATAAGTTCACAGCATCACCTAGCAACTTTAGAACCAATTCCTATCTCCATCTTCATGCATGGTGACGGAACTTTGGAGGGATTAATTTATCAGGAGTTTCAGATAGATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGTGAATAGTACTTGTAGGGTGTTTGAAAAGATTTATCCTCTTGAAATTGTGATGGAGTTGTTGGTTTTTGAGACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGAAGTACTGGAGAGTATGTAA

mRNA sequence

ATGGCCGAAGAAATCATTGATACTTGTAGGTATGGTTACTACATGGTTTATGGGTATGTCACTAACAATTACCAATCCCCACCTACAGCGTCAACCACGAAACCAAATTCGTTTTCGACGCAACTCGCCAACATATATCAGACGAATGGACCTGAATTATTTCAAACTTCAACTCAGATGTCAGCACTTCCAAACATAAAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGTGAATAGTACTTGTAGGGTGTTTGAAAAGATTTATCCTCTTGAAATTGTGATGGAGTTGTTGGTTTTTGAGACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGAAGTACTGGAGAGTATGTAA

Coding sequence (CDS)

ATGGCCGAAGAAATCATTGATACTTGTAGGTATGGTTACTACATGGTTTATGGGTATGTCACTAACAATTACCAATCCCCACCTACAGCGTCAACCACGAAACCAAATTCGTTTTCGACGCAACTCGCCAACATATATCAGACGAATGGACCTGAATTATTTCAAACTTCAACTCAGATGTCAGCACTTCCAAACATAAAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGTGAATAGTACTTGTAGGGTGTTTGAAAAGATTTATCCTCTTGAAATTGTGATGGAGTTGTTGGTTTTTGAGACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGAAGTACTGGAGAGTATGTAA

Protein sequence

MAEEIIDTCRYGYYMVYGYVTNNYQSPPTASTTKPNSFSTQLANIYQTNGPELFQTSTQMSALPNIKVEEEEEEEEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQVMTAPTSDSDEVLESM*
Homology
[Close]
BLAST of CSPI07G06360 vs. ExPASy TrEMBL
Match: A0A0A0K679 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-07
Identity = 53/133 (39.85%), Postives = 66/133 (49.62%), Query Frame = 0 

Query: 1   MAEEIIDTCRYGYYMVYGYVTNNYQSPPTASTTKPNSFSTQLANIYQTNGPELFQTSTQM 60
           MAEEIIDTCRY        VT  +      ST+K    + +   +Y     E++  + ++
Sbjct: 1   MAEEIIDTCRY-------MVTTWFMD---VSTSKHVKKAIETQQLYFELCTEMYIINIEL 60

Query: 61  SALPNI-----KVEEEEEEEEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQVMT 120
                I     KVEEEEEE++                         ETTREIDHQPQVMT
Sbjct: 61  VVDEIINHWVRKVEEEEEEDD-------------------------ETTREIDHQPQVMT 98

Query: 121 APTSDSDEVLESM 129
           APTSDSD+VLESM
Sbjct: 121 APTSDSDDVLESM 98

[Close]
BLAST of CSPI07G06360 vs. ExPASy TrEMBL
Match: A0A0A0K2A5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068580 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-06
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 67  KVEEEEEEEEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQV-MTAPTSDSDEVL 126
           KVEEEEE++E+  +S  RVF+KIY LEI +ELL+F+  R +D+QPQV M  PTSDS   +
Sbjct: 133 KVEEEEEDQENSTSS--RVFKKIYRLEITLELLIFQIVRVMDYQPQVLMMVPTSDS--AM 191

Query: 127 ESM 129
           ESM
Sbjct: 193 ESM 191

[Close]
BLAST of CSPI07G06360 vs. ExPASy TrEMBL
Match: A0A5D3E1H7 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002290 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 75  EEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQVMTAPTSDS 122
           EED+ NS CRVF KIYPLEIV+EL+VFET R ID QPQV   PT ++
Sbjct: 136 EEDQENS-CRVFRKIYPLEIVLELVVFETIRAID-QPQVTMIPTPNN 180

[Close]
BLAST of CSPI07G06360 vs. NCBI nr
Match: KGN43802.1 (hypothetical protein Csa_017284 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-07
Identity = 53/133 (39.85%), Postives = 66/133 (49.62%), Query Frame = 0 

Query: 1   MAEEIIDTCRYGYYMVYGYVTNNYQSPPTASTTKPNSFSTQLANIYQTNGPELFQTSTQM 60
           MAEEIIDTCRY        VT  +      ST+K    + +   +Y     E++  + ++
Sbjct: 1   MAEEIIDTCRY-------MVTTWFMD---VSTSKHVKKAIETQQLYFELCTEMYIINIEL 60

Query: 61  SALPNI-----KVEEEEEEEEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQVMT 120
                I     KVEEEEEE++                         ETTREIDHQPQVMT
Sbjct: 61  VVDEIINHWVRKVEEEEEEDD-------------------------ETTREIDHQPQVMT 98

Query: 121 APTSDSDEVLESM 129
           APTSDSD+VLESM
Sbjct: 121 APTSDSDDVLESM 98

[Close]
BLAST of CSPI07G06360 vs. NCBI nr
Match: KAE8645830.1 (hypothetical protein Csa_017091 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 67  KVEEEEEEEEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQV-MTAPTSDSDEVL 126
           KVEEEEE++E+  +S  RVF+KIY LEI +ELL+F+  R +D+QPQV M  PTSDS   +
Sbjct: 133 KVEEEEEDQENSTSS--RVFKKIYRLEITLELLIFQIVRVMDYQPQVLMMVPTSDS--AM 191

Query: 127 ESM 129
           ESM
Sbjct: 193 ESM 191

[Close]
BLAST of CSPI07G06360 vs. NCBI nr
Match: KAA0044491.1 (putative zinc finger protein [Cucumis melo var. makuwa] >TYK29618.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 75  EEDEVNSTCRVFEKIYPLEIVMELLVFETTREIDHQPQVMTAPTSDS 122
           EED+ NS CRVF KIYPLEIV+EL+VFET R ID QPQV   PT ++
Sbjct: 136 EEDQENS-CRVFRKIYPLEIVLELVVFETIRAID-QPQVTMIPTPNN 180

The following BLAST results are available for this feature:
BLAST of CSPI07G06360 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G06360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6794.2e-0739.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1[more]
A0A0A0K2A58.0e-0658.73RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G068580 P... [more]
A0A5D3E1H78.8e-0568.09Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of CSPI07G06360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43802.18.7e-0739.85hypothetical protein Csa_017284 [Cucumis sativus][more]
KAE8645830.11.6e-0558.73hypothetical protein Csa_017091 [Cucumis sativus][more]
KAA0044491.11.8e-0468.09putative zinc finger protein [Cucumis melo var. makuwa] >TYK29618.1 putative zin... [more]
BLAST of CSPI07G06360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G06360.1CSPI07G06360.1mRNA