CSPI07G05790 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G05790
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 4324383 .. 4324999 (+)
RNA-Seq Expression	CSPI07G05790
Synteny	CSPI07G05790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAACTCCCTTCCAACTTCACAACCTCTCTCTCTCCACATCCATCAATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCTTATTTCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAATACTTTTGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCACCGCTGCTTTCCTCTTCTAGATCTCCACTCCTTCTCCTTTCTACGTGCTAATTACACATTTCTCTATTCCCTCTTTTTAAATATTTTTGCTCGCATAGTTTCTAAGGCATGGTGGAGTTTTGAGTTTGTAAAACATTTTCTTCTTTATTTGAATTTATCATATAAACTTTATTTCTATTTATTCTGATTAACTCATATCGATTCGAATTTTTTAGTCGTGTTTGCTCCAATAAAAACGTAATACATCAATAGTATTAAGAAGAGT

mRNA sequence

ACAAAACTCCCTTCCAACTTCACAACCTCTCTCTCTCCACATCCATCAATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCTTATTTCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAATACTTTTGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCACCGCTGCTTTCCTCTTCTAGATCTCCACTCCTTCTCCTTTCTACGTGCTAATTACACATTTCTCTATTCCCTCTTTTTAAATATTTTTGCTCGCATAGTTTCTAAGGCATGGTGGAGTTTTGAGTTTGTAAAACATTTTCTTCTTTATTTGAATTTATCATATAAACTTTATTTCTATTTATTCTGATTAACTCATATCGATTCGAATTTTTTAGTCGTGTTTGCTCCAATAAAAACGTAATACATCAATAGTATTAAGAAGAGT

Coding sequence (CDS)

ATGGCTTCCCTCCCCATCACACTTATGGCACTAACGGCCTTATTTCTCATCACCTCCACCTTCGCTCAGTCTCCAGCCCCGTCGCCCAAGAAATCACACCACCCCCACTCCCACTCTCCCTCTCCCCATAATTCCCCTATCCTTTCTCACAAATCGGTGTCTTCACCTTCGCCTTCACCGTCGCCTTCTCCAGTCGCTTCTTCCTCACTCCCTCCGGCCAATGCTCTTGCTCCTGCTCTTCTCTTTAATGATGCTATTACCAATACTTTTGCTGTCTCGGCTTCTCTCTTCACCGCCGTCTCCACCGCTGCTTTCCTCTTCTAG

Protein sequence

MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSPSPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSTAAFLF*

Homology

[Close]

BLAST of CSPI07G05790 vs. ExPASy TrEMBL
Match: A0A0A0K7F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60
           MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSTAAFLF 108
           SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVS AAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

[Close]

BLAST of CSPI07G05790 vs. NCBI nr
Match: XP_011659718.1 (classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_017283 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60
           MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSTAAFLF 108
           SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVS AAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

The following BLAST results are available for this feature:

BLAST of CSPI07G05790 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G05790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7F2	1.4e-43	99.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1	[more]

BLAST of CSPI07G05790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659718.1	2.8e-43	99.07	classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical ...	[more]

BLAST of CSPI07G05790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G05790.1	CSPI07G05790.1	mRNA