CSPI07G04300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G04300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Wound-responsive family protein
Location	Chr7: 3266299 .. 3267416 (+)
RNA-Seq Expression	CSPI07G04300
Synteny	CSPI07G04300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGAGGCTATGTTAATCAAGTATGTTTCCGGTTTAGAGATTGAACCCAACCGGCTCTGTCTATAAATAAGATGGGGGGTTTCTATGTTTTTTCAATCAACGCAATAACGGTGAACGAGTTGTGTGAGTGAGTTAACTCAGTTTATCTTAAAAAGAACTTTGTGTCAAGTGTTTGAGGTTGAAGATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGCGAAAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGATTGGCTTCTAGGTCACTTTTGGTGACATGTAGAGAGATCTGGTCGGCGATCGTTGATCGACGATCAGATTTGGAGCTGCTCAAGCGAGATGGAATTCGAGGTATTTGATATGGGATTGACGCGATGAAGATTGAGTGATGATTGATCAATAACCTTGAAAATTATTTGGAAAAATCGCTATGTAGCTTTGGGATAATTGTACAGAAGAAAAAGGGAAATGAATCGGTTTCTTTGAAATATAATAAATCTCGATTCTGTTTTTCTTTGCTTAATTTGAAGTTTATGTGCAACTAAGTGAGGTTAAATTCAACTGAACTGAATCCAGAACCCAGATCTGTTTAACTGACTACCTTTTGATGAATCAAATCGAAAATTTGTTTGGATCTGAACTAATTTTAGGGTTTAGAAGCTCTTCATATTTAAAAGATTTTTCACCGAGATCTGCTGGAGAAGATGGTAACCAAGATGGCAACAAGCCAACTTTTTGAGATTCAATTTCTTTTATTTTCTTTAAGTCAAGTTGTCTGGGGGATGGAAATTTCATTTGAATCTTCAGATAATTTATAATTTTGTTATGTGAATTAGCTTCATACTTTGCTTCCAAGAATTTCCTATGCAAAATTATTCTTTTCACTCGTGAATTATTTGCTACTGC

mRNA sequence

CCGGAGGCTATGTTAATCAAGTATGTTTCCGGTTTAGAGATTGAACCCAACCGGCTCTGTCTATAAATAAGATGGGGGGTTTCTATGTTTTTTCAATCAACGCAATAACGGTGAACGAGTTGTGTGAGTGAGTTAACTCAGTTTATCTTAAAAAGAACTTTGTGTCAAGTGTTTGAGGTTGAAGATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGCGAAAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGATTGGCTTCTAGGTCACTTTTGGTGACATGTAGAGAGATCTGGTCGGCGATCGTTGATCGACGATCAGATTTGGAGCTGCTCAAGCGAGATGGAATTCGAGGTATTTGATATGGGATTGACGCGATGAAGATTGAGTGATGATTGATCAATAACCTTGAAAATTATTTGGAAAAATCGCTATGTAGCTTTGGGATAATTGTACAGAAGAAAAAGGGAAATGAATCGGTTTCTTTGAAATATAATAAATCTCGATTCTGTTTTTCTTTGCTTAATTTGAAGTTTATGTGCAACTAAGTGAGGTTAAATTCAACTGAACTGAATCCAGAACCCAGATCTGTTTAACTGACTACCTTTTGATGAATCAAATCGAAAATTTGTTTGGATCTGAACTAATTTTAGGGTTTAGAAGCTCTTCATATTTAAAAGATTTTTCACCGAGATCTGCTGGAGAAGATGGTAACCAAGATGGCAACAAGCCAACTTTTTGAGATTCAATTTCTTTTATTTTCTTTAAGTCAAGTTGTCTGGGGGATGGAAATTTCATTTGAATCTTCAGATAATTTATAATTTTGTTATGTGAATTAGCTTCATACTTTGCTTCCAAGAATTTCCTATGCAAAATTATTCTTTTCACTCGTGAATTATTTGCTACTGC

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCCAGTGTGGCTGTGGCTCAAGGCCATACCGAGATCGGACACAAGTGGAAGTCTGGACTTAAATCTCTTCGACAAGGTCGGAGACTTTTGTCTTCCGGCGAAAATTCGGCGGATCTCCGTCCACTGTCCAGTTTGGTTGGATCGGAAGGCTCTGGAAGTGTGCGGAGCTGTGACGTTGACGAGAGGATAGCACAATCGGAGGATTCTCTCCGGAGAGTTATGTACTTGAACTGTTGGGGCCAAGGGTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG*

Homology

[Close]

BLAST of CSPI07G04300 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNR+ MAASVAV QGHT+ G K K GLKSL+ G+R   SG +SADLRP+S ++G + 
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +G + S D DER  Q+E+SLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ GHKWKSG+KS++  ++ L SG +++DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
           G + + D DER   +++SLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. ExPASy TrEMBL
Match: A0A445HSV4 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_034960 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.4e-22
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRV MAA+VAVAQGHT+ GHK K+ L S+   R  L SG + +DLRPLS +VGS+ 
Sbjct: 1  MSYLNRVWMAATVAVAQGHTDPGHKCKTALTSIHHNRSRLFSGGSLSDLRPLSGVVGSDV 60

Query: 61 SGSVR-SCDVDERIAQSEDSLRRVMYLNCWGQG 93
          +GSV  S DV+ R+ Q++DSLR+VMYL+CWGQG
Sbjct: 61 AGSVAGSSDVENRVRQADDSLRKVMYLSCWGQG 93

[Close]

BLAST of CSPI07G04300 vs. NCBI nr
Match: KAE8645762.1 (hypothetical protein Csa_020269 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. NCBI nr
Match: KAA0031600.1 (wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
          SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. NCBI nr
Match: KAG7011951.1 (hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
           G+VRS D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. NCBI nr
Match: KAG6572339.1 (hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.0 bits (432), Expect = 4.8e-39
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
           G+VR+ D DER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. NCBI nr
Match: KAG6589197.1 (hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022897.1 hypothetical protein SDJN02_16633, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60

Query: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 92

[Close]

BLAST of CSPI07G04300 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R LSS     DLRPL++   ++ 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAA---ADL 60

Query: 61 SGSVRSCDVDERIAQS--EDSLRRVMYLNCWGQG 93
          +G     +   R + S  ++SLR+VMYLNCW QG
Sbjct: 61 TGDSLPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of CSPI07G04300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G04300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLJ2	1.5e-43	100.00	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Z3	1.5e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
A0A5N6RB28	6.1e-24	64.13	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A2N9HZV9	5.2e-23	59.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
A0A445HSV4	4.4e-22	62.37	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_034960 PE=4 SV=1	[more]

BLAST of CSPI07G04300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645762.1	3.2e-43	100.00	hypothetical protein Csa_020269 [Cucumis sativus]	[more]
KAA0031600.1	3.2e-43	100.00	wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-res...	[more]
KAG7011951.1	2.1e-39	92.39	hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6572339.1	4.8e-39	91.30	hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589197.1	2.2e-36	88.04	hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI07G04300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	5.3e-12	45.74	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 e-value: 1.6E-16 score: 61.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G04300.1	CSPI07G04300.1	mRNA