CSPI07G04260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G04260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Wound-responsive family protein
Location	Chr7: 3252135 .. 3252894 (+)
RNA-Seq Expression	CSPI07G04260
Synteny	CSPI07G04260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCACACTTCACAATCAAATTTCACCAACAAATTAAAATTGAAATTCGAAAGCGATTATTGTAGAGTGAAGAAAAAATCAAATGAGTTCATCAACAAGAGCGTTGTTTGTAGCGGCCACCGTCGGCGTTGTGGAGGCACTTAAGGATCAAGGAATTTGCCGGTGGAATCATATCTTAAGATCGGCACATCACTACGCCAGAAACCATGTTGGGTCTCTTTCTCAGGCTAAGAAGTTCTCCTCCGCCGTGTCTTCCGCCAACCGCCTCCAACAGTCGGAGGAATCTCTCAGAACAGTTATGTATCTTAGCTGTTGGGGTCCTAATAACTGAAATCATCCAACCAGATCATACTCCGGTTGGACTGGCGGCGGTTCGGGTCAAAAAAGATATTGCTGTCCGGTTTTGAAGCACTTGAGCTCACTTTATCTTCCTCCCTTCTTCATCAGTTTGTAATTGTAATTAAATGTTTAATGGAGGATTTGGGAGAGTCTGATTCTTTCAACAATTGTAAACCCAATATTTCCCTTCTTAATAATAGCGGATTATTGATCGATTATTGAAGGAAAAAATGGACTTCAACTTAGGTTGGGTGACTATTTAACTACTGAATTAGTAACTGATAATAGAGCATCAAGTTGAGGTTCAACCTCTGACCAATACTAAATCGTTGATGCTTGAATCTATTAATTTTTCAATTGGACTAAAGTAATTAGTAATTAGAGAGCATCCCTTTCATCATCCATCTACGATGATCACAC

mRNA sequence

ATCCCACACTTCACAATCAAATTTCACCAACAAATTAAAATTGAAATTCGAAAGCGATTATTGTAGAGTGAAGAAAAAATCAAATGAGTTCATCAACAAGAGCGTTGTTTGTAGCGGCCACCGTCGGCGTTGTGGAGGCACTTAAGGATCAAGGAATTTGCCGGTGGAATCATATCTTAAGATCGGCACATCACTACGCCAGAAACCATGTTGGGTCTCTTTCTCAGGCTAAGAAGTTCTCCTCCGCCGTGTCTTCCGCCAACCGCCTCCAACAGTCGGAGGAATCTCTCAGAACAGTTATGTATCTTAGCTGTTGGGGTCCTAATAACTGAAATCATCCAACCAGATCATACTCCGGTTGGACTGGCGGCGGTTCGGGTCAAAAAAGATATTGCTGTCCGGTTTTGAAGCACTTGAGCTCACTTTATCTTCCTCCCTTCTTCATCAGTTTGTAATTGTAATTAAATGTTTAATGGAGGATTTGGGAGAGTCTGATTCTTTCAACAATTGTAAACCCAATATTTCCCTTCTTAATAATAGCGGATTATTGATCGATTATTGAAGGAAAAAATGGACTTCAACTTAGGTTGGGTGACTATTTAACTACTGAATTAGTAACTGATAATAGAGCATCAAGTTGAGGTTCAACCTCTGACCAATACTAAATCGTTGATGCTTGAATCTATTAATTTTTCAATTGGACTAAAGTAATTAGTAATTAGAGAGCATCCCTTTCATCATCCATCTACGATGATCACAC

Coding sequence (CDS)

ATGAGTTCATCAACAAGAGCGTTGTTTGTAGCGGCCACCGTCGGCGTTGTGGAGGCACTTAAGGATCAAGGAATTTGCCGGTGGAATCATATCTTAAGATCGGCACATCACTACGCCAGAAACCATGTTGGGTCTCTTTCTCAGGCTAAGAAGTTCTCCTCCGCCGTGTCTTCCGCCAACCGCCTCCAACAGTCGGAGGAATCTCTCAGAACAGTTATGTATCTTAGCTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSANRLQQSEESLRTVMYLSCWGPNN*

Homology

[Close]

BLAST of CSPI07G04260 vs. ExPASy TrEMBL
Match: A0A0A0K5N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          RLQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. ExPASy TrEMBL
Match: A0A5D3C9S0 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003740 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-37
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNHILRSAHHYARNHVGS+SQAKKFSSAVSSAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          RLQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. ExPASy TrEMBL
Match: A0A1S3C1Y6 (uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-37
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNHILRSAHHYARNHVGS+SQAKKFSSAVSSAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          RLQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. ExPASy TrEMBL
Match: A0A5D3C5F5 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003750 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. ExPASy TrEMBL
Match: A0A0A0K6Y8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. NCBI nr
Match: XP_004136807.1 (uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical protein Csa_020183 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          RLQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. NCBI nr
Match: XP_008455358.1 (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wound-responsive family protein [Cucumis melo var. makuwa] >TYK07056.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNHILRSAHHYARNHVGS+SQAKKFSSAVSSAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          RLQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. NCBI nr
Match: XP_004136808.1 (uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED: uncharacterized protein LOC103495545 [Cucumis melo] >KAA0031605.1 Wound-responsive family protein [Cucumis melo var. makuwa] >KGN43576.1 hypothetical protein Csa_020502 [Cucumis sativus] >TYK07057.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
          R QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. NCBI nr
Match: XP_023554653.1 (uncharacterized protein LOC111811841 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 4.3e-31
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSA- 60
          MSSSTRAL VAA+VGVVEALKDQGICRWNH++RSAHHYA+NHVGS+SQAKKFSSAV+ A 
Sbjct: 1  MSSSTRALIVAASVGVVEALKDQGICRWNHLIRSAHHYAKNHVGSISQAKKFSSAVAPAP 60

Query: 61 -NRLQQSEESLRTVMYLSCWGPNN 83
            +L QSEESLRTVMYLSCWGPNN
Sbjct: 61 GKQLHQSEESLRTVMYLSCWGPNN 84

[Close]

BLAST of CSPI07G04260 vs. NCBI nr
Match: XP_038888472.1 (uncharacterized protein LOC120078309 [Benincasa hispida])

HSP 1 Score: 144.4 bits (363), Expect = 4.3e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60
          MSSSTR L VAATVGVVEALKDQGICRWNH+LRS HHYARNHV S+SQAKK SS V SAN
Sbjct: 1  MSSSTRTLVVAATVGVVEALKDQGICRWNHLLRSTHHYARNHVRSISQAKKLSSTVPSAN 60

Query: 61 RLQQSEESLRTVMYLSCWGPNN 83
           L++SEESLRTVMYLSCWGPNN
Sbjct: 61 HLRRSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of CSPI07G04260 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 104.0 bits (258), Expect = 6.0e-23
Identity = 50/83 (60.24%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQ-GICRWNHILRSAHHYARNHVGSLSQAKKF-SSAVSS 60
          MSS+++   VAA++G VEALKDQ G+CRWN+++RSA+ Y RN++ S+SQAKK  SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANRLQQSEESLRTVMYLSCWGPN 82
           N+ +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of CSPI07G04260 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-21
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MSSSTRALFVAATVGVVEALKDQ-GICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSA 60
          MSS+++A  VA ++G VEALKDQ G+CRWN+ILRS + + RN+V S+SQ K+FSS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NRLQQSEESLRTVMYLSCWGPN 82
                   + +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CSPI07G04260 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 0


Query: 10 VAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSANRLQ------ 69
          VA  +  VE LKDQG+ RWN++ R  H  A   V +++   + S   SS++         
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 ---QSEESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of CSPI07G04260 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 48 QAKKFSSAVSSANRLQQSEESLRTVMYLSCWG 80
          ++ +F +A S   RL+Q+EESLRTVM+LSCWG
Sbjct: 56 ESSRFGAAAS--ERLRQAEESLRTVMFLSCWG 85

The following BLAST results are available for this feature:

BLAST of CSPI07G04260 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G04260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5N2	8.7e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046650 PE=4 SV=1	[more]
A0A5D3C9S0	7.3e-37	97.56	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1Y6	7.3e-37	97.56	uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=...	[more]
A0A5D3C5F5	7.6e-34	91.46	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Y8	7.6e-34	91.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1	[more]

BLAST of CSPI07G04260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136807.1	1.8e-37	100.00	uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical ...	[more]
XP_008455358.1	1.5e-36	97.56	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wou...	[more]
XP_004136808.1	1.6e-33	91.46	uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED...	[more]
XP_023554653.1	4.3e-31	84.52	uncharacterized protein LOC111811841 [Cucurbita pepo subsp. pepo]	[more]
XP_038888472.1	4.3e-31	85.37	uncharacterized protein LOC120078309 [Benincasa hispida]	[more]

BLAST of CSPI07G04260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	6.0e-23	60.24	Wound-responsive family protein	[more]
AT4G10270.1	4.3e-21	56.67	Wound-responsive family protein	[more]
AT4G33560.1	1.5e-05	33.75	Wound-responsive family protein	[more]
AT4G05070.1	3.6e-04	59.38	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 e-value: 3.4E-32 score: 111.3
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G04260.1	CSPI07G04260.1	mRNA