CSPI07G03210 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATAGTGGACATTCAAGTGCTTTCCACATGCAGCGTCAGCGTGCACTCCATCTTTCCATTACCATTATGTTCTCCTCTGTCCCACACTTCCTTCTTCTTCTTCTTCTTCTTCTTCATCTAATTCCCTCAATCCCCGCATAATTCATCGCCTCCATAATCACACAAACAACAATTCCAAAGTTCCCATCAACCCCTTTCTCTTTCTTTTTATATAAATTCACCCATTACGATCCTTCCATTTCCATACCTTTTTTGTTTTCTTTTTGTTTTGCTTCAGTAGCCATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGATAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGATGAAGAGAAGGGGGGATTTTAATTAGGGTTTAACTTAAATCTATGGAAGTTTTTTCATATATATGTTGTGTGTGTGTTTATTATCTTTGAGTTGTGATTGTTTTTGCACAACTTGAATGGATATGTTGTTCTTGGATGTGATTTGAATGGAAGGGAAGAAAAAAACATGGTGTTTCCATTTTGGAAATAAATTCCATAATGAGATTTTATAGATTATATTCAA TAATAGTGGACATTCAAGTGCTTTCCACATGCAGCGTCAGCGTGCACTCCATCTTTCCATTACCATTATGTTCTCCTCTGTCCCACACTTCCTTCTTCTTCTTCTTCTTCTTCTTCATCTAATTCCCTCAATCCCCGCATAATTCATCGCCTCCATAATCACACAAACAACAATTCCAAAGTTCCCATCAACCCCTTTCTCTTTCTTTTTATATAAATTCACCCATTACGATCCTTCCATTTCCATACCTTTTTTGTTTTCTTTTTGTTTTGCTTCAGTAGCCATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGATAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGATGAAGAGAAGGGGGGATTTTAATTAGGGTTTAACTTAAATCTATGGAAGTTTTTTCATATATATGTTGTGTGTGTGTTTATTATCTTTGAGTTGTGATTGTTTTTGCACAACTTGAATGGATATGTTGTTCTTGGATGTGATTTGAATGGAAGGGAAGAAAAAAACATGGTGTTTCCATTTTGGAAATAAATTCCATAATGAGATTTTATAGATTATATTCAA ATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGATAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGA MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGNDKSGFPMNNFVETINEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYEDQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSEGLLP* Homology
BLAST of CSPI07G03210 vs. ExPASy Swiss-Prot
Match: Q01197 (Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 9.8e-05 Identity = 66/250 (26.40%), Postives = 109/250 (43.60%), Query Frame = 0
BLAST of CSPI07G03210 vs. ExPASy TrEMBL
Match: A0A0A0K1D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038700 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132 Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0
BLAST of CSPI07G03210 vs. ExPASy TrEMBL
Match: A0A5D3DDN1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00230 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115 Identity = 227/254 (89.37%), Postives = 236/254 (92.91%), Query Frame = 0
BLAST of CSPI07G03210 vs. ExPASy TrEMBL
Match: A0A1S3C0L5 (protein E6-like OS=Cucumis melo OX=3656 GN=LOC103495646 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115 Identity = 227/254 (89.37%), Postives = 236/254 (92.91%), Query Frame = 0
BLAST of CSPI07G03210 vs. ExPASy TrEMBL
Match: A0A5A7UVJ1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00270 PE=4 SV=1) HSP 1 Score: 421.8 bits (1083), Expect = 2.1e-114 Identity = 226/254 (88.98%), Postives = 235/254 (92.52%), Query Frame = 0
BLAST of CSPI07G03210 vs. ExPASy TrEMBL
Match: A0A6J1HVL6 (probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 4.5e-69 Identity = 173/287 (60.28%), Postives = 197/287 (68.64%), Query Frame = 0
BLAST of CSPI07G03210 vs. NCBI nr
Match: XP_011659700.1 (protein E6 [Cucumis sativus] >KGN43470.1 hypothetical protein Csa_020541 [Cucumis sativus]) HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-132 Identity = 252/253 (99.60%), Postives = 252/253 (99.60%), Query Frame = 0
BLAST of CSPI07G03210 vs. NCBI nr
Match: XP_008455495.1 (PREDICTED: protein E6-like [Cucumis melo] >TYK21625.1 protein E6-like [Cucumis melo var. makuwa]) HSP 1 Score: 424.9 bits (1091), Expect = 5.0e-115 Identity = 227/254 (89.37%), Postives = 236/254 (92.91%), Query Frame = 0
BLAST of CSPI07G03210 vs. NCBI nr
Match: KAA0059120.1 (protein E6-like [Cucumis melo var. makuwa]) HSP 1 Score: 421.8 bits (1083), Expect = 4.2e-114 Identity = 226/254 (88.98%), Postives = 235/254 (92.52%), Query Frame = 0
BLAST of CSPI07G03210 vs. NCBI nr
Match: XP_038886989.1 (protein E6-like [Benincasa hispida]) HSP 1 Score: 331.3 bits (848), Expect = 7.6e-87 Identity = 188/253 (74.31%), Postives = 206/253 (81.42%), Query Frame = 0
BLAST of CSPI07G03210 vs. NCBI nr
Match: XP_022969172.1 (probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima]) HSP 1 Score: 271.2 bits (692), Expect = 9.3e-69 Identity = 173/287 (60.28%), Postives = 197/287 (68.64%), Query Frame = 0
BLAST of CSPI07G03210 vs. TAIR 10
Match: AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). ) HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07 Identity = 81/272 (29.78%), Postives = 117/272 (43.01%), Query Frame = 0
BLAST of CSPI07G03210 vs. TAIR 10
Match: AT1G03820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 2.6e-05 Identity = 73/243 (30.04%), Postives = 103/243 (42.39%), Query Frame = 0
BLAST of CSPI07G03210 vs. TAIR 10
Match: AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 5.9e-05 Identity = 75/266 (28.20%), Postives = 110/266 (41.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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