CSPI07G02540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G02540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr7: 2159175 .. 2160922 (+)
RNA-Seq Expression	CSPI07G02540
Synteny	CSPI07G02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGGTGGAGGCACGCGAGTTGAGTGCGACGAGGTTCCTCCGATCCTCCGATCGCTTATATAAGTGGCCAAAAGGTTGAATCAAGATGAACTGATCATCAATCTTCTTCAATCTTTACCATCCCTACAATTCCACTATTTTTCTTCGATTCTTTCCCTTTTCGATCCTACTTTCTCTGTTCTCCAGTACTGAAAGCAATTGAAGTAAGTTTTCCTTAATCCCTTTTCCTGTTCATTTCCTTTCCGAAAGAAATGTTCGCTTTCCTCTACTGGGTTTTGTTTAGTTTCTGAGTTTGGTAAAGGAAACGGCTCTTTGAGCATTTCAGTCTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAGCTTACTTTGACCACCAGTGGATTATTGTTCTTTATCATGTTTGAGGATGTAGGAGGATTTTCCATTTTCACTGAAACTTGTGTGGTTTTAGTCCCTCAAAAGTGTTTTGTGGAATGTTATTAGGATTTGTTGTTCTTATGTTTTTGGACTGTTGAAATTTCTCTATGTTCCTGGTGGAAGATTTTGTAATTGGATCTTTAGCCATAGGGTTTACTTTTCAGAAATCTATTCTTGAATGGTAAGTGGATCATGATTCATGTGATAATTGTCATTTCATATGCTTTAATGGAACTAAATGAATTCCCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAGATTTCATTAATTAGTTGCTTAGTTCATTTTTTTAGTTCATTTTCTTTCCTGACGATTTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAATAAAAAGGAGAAAAAGCAAGAGGTTCTTAGTTGCTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAACCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAATTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAATGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGACGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAAGTGTTTAGTGTACTACAAATGTAGTCAGAGGAAAACTCATGTACAGCATACTCCTAAAGATAATCGTGAGCACATATCCTACCACTGTTTGACATTTGAAGTTTGATGTGTGTGACGGGTCTTAAAGATCAAAGTTTTGTCACAGTAAATACATGTTCATAGAAGTTCTATGCTTCTAGTTTGTGCTTTTAGTTTTGAGTTAATTCACTTTAGCTTTGAGTTAATTCACTTTAGCTTTGAGTTAATACATTATTACTTCATTTTCTTTATATATGAAATTGCTTGAGTATGGT

mRNA sequence

GAAGGGTGGAGGCACGCGAGTTGAGTGCGACGAGGTTCCTCCGATCCTCCGATCGCTTATATAAGTGGCCAAAAGGTTGAATCAAGATGAACTGATCATCAATCTTCTTCAATCTTTACCATCCCTACAATTCCACTATTTTTCTTCGATTCTTTCCCTTTTCGATCCTACTTTCTCTGTTCTCCAGTACTGAAAGCAATTGAACTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAACCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAATTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAATGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGACGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAAGTGTTTAGTGTACTACAAATGTAGTCAGAGGAAAACTCATGTACAGCATACTCCTAAAGATAATCGTGAGCACATATCCTACCACTGTTTGACATTTGAAGTTTGATGTGTGTGACGGGTCTTAAAGATCAAAGTTTTGTCACAGTAAATACATGTTCATAGAAGTTCTATGCTTCTAGTTTGTGCTTTTAGTTTTGAGTTAATTCACTTTAGCTTTGAGTTAATTCACTTTAGCTTTGAGTTAATACATTATTACTTCATTTTCTTTATATATGAAATTGCTTGAGTATGGT

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAATGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGACGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSSELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW*

Homology

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BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-37
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSI---DSFG 60
           MGLSSLP PSEG+L VILVNTALSIS++K  VR  L +VGI LS SS+   S+       
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  SSSELGDPNCGSSWNYLEMFRNRYPRIRFDKV-QSSGRREHDCSVCLTQFEPESAINHLF 120
           S+SE  D       +YLE FRNR P +RF+ + +   + +++CSVCL++F+ +S IN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 76  MFRNRYPRIRFDKVQSSGR-REHDCSVCLTQFEPESAINHL-FCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +SG     +C+VCL +FE E  I  L  C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]

BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-11
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 4   SSLPAPSEGVLNVILV-NTALSISMLKCFVRLIL----HMVGIRLSWSSTVVP-SIDSFG 63
           SSL +    VL +IL+    L IS+  CF+   L    H   + LS SS+V   + DS  
Sbjct: 19  SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query: 64  SSSELGDPNCGSSWNYLEMFRNRYPRIRFDKV--QSSGRREHDCSVCLTQFEPESAINHL 123
            S     P    S        +  P  +F  V  +SS     DC+VCL++FEPE  +  L
Sbjct: 79  FSGHRVSPETERS-----SVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLL 138

Query: 124 -FCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
             C H FH DC++ WL   N TCPLCR+PL + E
Sbjct: 139 PLCCHAFHADCIDIWL-VSNQTCPLCRSPLFASE 166

[Close]

BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 98  DCSVCLTQFEPESAINHLFCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]

BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 98  DCSVCLTQFEPESAINHLFCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL
Match: A0A0A0K6E0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031570 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.9e-84
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGI LSWSSTVVPSIDSFGSSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDPN GSSWNYLEMFRNRYPRIRFDKVQSSG REHDCSVCLTQFEPESAINHLFCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

[Close]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL
Match: A0A0A0K534 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSW STVVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDPN GSSWNYLEMFRNRYPRIRFDKVQSSG REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEE K CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKC VRLILHMVGIRLSW S+VV S DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGD N GSSWNYLEMFRNRYPRIRFDKV+SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKC VRLILHMVGIRLSW S+VV S DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGD N GSSWNYLEMFRNRYPRIRFDKV+SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL
Match: A0A5D3D707 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00210 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.3e-75
Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+ KC VRLILHMVGIRLSW S+VVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDP  GSSWNYL+MFRNRYPRIRFDKVQSS RREHDCSVCLTQFEPES INHL CGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of CSPI07G02540 vs. NCBI nr
Match: XP_011658650.1 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN43396.1 hypothetical protein Csa_020482 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 8.1e-84
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGI LSWSSTVVPSIDSFGSSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIHLSWSSTVVPSIDSFGSSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDPN GSSWNYLEMFRNRYPRIRFDKVQSSG REHDCSVCLTQFEPESAINHLFCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLFCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 154

[Close]

BLAST of CSPI07G02540 vs. NCBI nr
Match: XP_004144555.3 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypothetical protein Csa_020158 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 142/154 (92.21%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSW STVVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDPNCGSSWNYLEMFR+R PRIRFDKV SS RREHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHTDCLEKWLDYWNITCPLCRTPLMSEE K CFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKC VRLILHMVGIRLSW S+VV S DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGD N GSSWNYLEMFRNRYPRIRFDKV+SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMLKC VRLILHMVGIRLSW S+VV S DSF +SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGD N GSSWNYLEMFRNRYPRIRFDKV+SS  REHDCSVCLTQFEPESAINHL CGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]

BLAST of CSPI07G02540 vs. NCBI nr
Match: XP_008462033.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+ KC VRLILHMVGIRLSW S+VVPS DSF SSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHL 120
           ELGDP  GSSWNYL+MFRNRYPRIRFDKVQSS RREHDCSVCLTQFEPES INHL CGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCF 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEEEK CF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]

BLAST of CSPI07G02540 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSI---DSFG 60
           MGLSSLP PSEG+L VILVNTALSIS++K  VR  L +VGI LS SS+   S+       
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  SSSELGDPNCGSSWNYLEMFRNRYPRIRFDKV-QSSGRREHDCSVCLTQFEPESAINHLF 120
           S+SE  D       +YLE FRNR P +RF+ + +   + +++CSVCL++F+ +S IN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CSPI07G02540 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSI---DSFG 60
           MGLSSLP PSEG+L VILVNTALSIS++K  VR  L +VGI LS SS+   S+       
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  SSSELGDPNCGSSWNYLEMFRNRYPRIRFDKV-QSSGRREHDCSVCLTQFEPESAINHLF 120
           S+SE  D       +YLE FRNR P +RF+ + +   + +++CSVCL++F+ +S IN L 
Sbjct: 61  STSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKLK 120

Query: 121 CGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 CGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]

BLAST of CSPI07G02540 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSS 60
           MG+S  P  SEGV+ ++++NT +S+S++K  VR +++MV            S ++  + +
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMV------------SSETNEARN 60

Query: 61  ELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLF-CGH 120
           +  D +   S     +    +  +  ++   + R   DC VCL  F+ E  ++ L  C H
Sbjct: 61  KEDDQDHEDSKRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKH 120

Query: 121 LFHTDCLEKWLDYWNITCPLCRTPL 145
            FH+ CL+KW    + TCPLCR+ L
Sbjct: 121 YFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of CSPI07G02540 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 76  MFRNRYPRIRFDKVQSSGR-REHDCSVCLTQFEPESAINHL-FCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +SG     +C+VCL +FE E  I  L  C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]

BLAST of CSPI07G02540 vs. TAIR 10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4 )

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 4   SSLPAPSEGVLNVILV-NTALSISMLKCFVRLIL----HMVGIRLSWSSTVVP-SIDSFG 63
           SSL +    VL +IL+    L IS+  CF+   L    H   + LS SS+V   + DS  
Sbjct: 19  SSLDSLKPSVLVIILILLMTLLISVSICFLLRCLNRCSHRSVLPLSSSSSVATVTSDSRR 78

Query: 64  SSSELGDPNCGSSWNYLEMFRNRYPRIRFDKV--QSSGRREHDCSVCLTQFEPESAINHL 123
            S     P    S        +  P  +F  V  +SS     DC+VCL++FEPE  +  L
Sbjct: 79  FSGHRVSPETERS-----SVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLL 138

Query: 124 -FCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
             C H FH DC++ WL   N TCPLCR+PL + E
Sbjct: 139 PLCCHAFHADCIDIWL-VSNQTCPLCRSPLFASE 166

The following BLAST results are available for this feature:

BLAST of CSPI07G02540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	2.0e-37	56.38	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9XF92	5.1e-12	42.67	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9LY41	5.6e-11	37.01	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]
Q9ZT50	1.4e-09	47.06	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9ZU51	4.0e-09	47.92	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]

BLAST of CSPI07G02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6E0	3.9e-84	98.05	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031570 P...	[more]
A0A0A0K534	1.0e-79	94.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 P...	[more]
A0A1S4E4A9	1.1e-75	90.26	probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3CGH9	1.1e-75	90.26	probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G...	[more]
A0A5D3D707	3.3e-75	90.20	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CSPI07G02540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658650.1	8.1e-84	98.05	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN43396.1 hypoth...	[more]
XP_004144555.3	3.3e-77	92.21	probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypo...	[more]
XP_008462031.1	2.4e-75	90.26	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo]	[more]
XP_016902815.1	2.4e-75	90.26	PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo]	[more]
XP_008462033.1	6.9e-75	90.20	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]	[more]

BLAST of CSPI07G02540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04240.1	1.4e-38	56.38	RING/U-box superfamily protein	[more]
AT2G04240.2	1.4e-38	56.38	RING/U-box superfamily protein	[more]
AT1G67856.1	1.2e-13	30.34	RING/U-box superfamily protein	[more]
AT3G61460.1	3.6e-13	42.67	brassinosteroid-responsive RING-H2	[more]
AT3G60220.1	4.0e-12	37.01	TOXICOS EN LEVADURA 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..140 e-value: 6.0E-5 score: 32.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..141 e-value: 1.7E-10 score: 41.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..141 score: 12.651561
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..146 e-value: 7.3E-18 score: 66.0
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..154
None	No IPR available	PANTHER	PTHR47258:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G02540.1	CSPI07G02540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane