CSPI07G02040 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G02040
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationChr7: 1730625 .. 1731795 (+)
RNA-Seq ExpressionCSPI07G02040
SyntenyCSPI07G02040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACTTTGCCCGGGCAAGAGTATAATATTTGGGGCATATTGTTCGAGAAAAGGAGTGAAAGTTGACCCGAAAAAAACTAGAACAATAAAGGAATGGCCAATACCGACAAATGTGCGGGAAGTGCGGGGATTTTTTGGTCTAATTGGTTATTATCGGTGATATGTTCAAGATTATGGTAACGTGGCTACCCCTTCGACTCAATTGTTGAAGGCAGGAGCTTACGAGTGGACGAAAGAGACTCAAGAAGCTTTTGAGAAATTAAAGAATGCTATGATGACATTGCCAGTGCTAGCATTACCTAATTTCAATTTGCCCTTCGAGATTGAAACTAATGCATCTGGCAATGGGATTGGAGTAGTGTTGATCCAAGTAACGAGGCCAATTGCTTATTTTAGTCACACTTTGTTCGTGAGGGATCGGCTAAACCGATTTATGAATGGGAGTTAATGGCAGTGGAGTTAGTTGTGCAACGGTGGAGACCGAAATGTTATGGAGGAAATTTGTGGTAAAAACTTATCAGCGATCTCTGAATTTTTGTTGGAACGAGTTATTCAACCTCAACATCAAAAATGGATCGCTAAGTTGTTAAGGTTATACGTCTGAGGTAATCTATAAACCGGGGTTGGAGAATAAGGTTGCTGATGCACTCTCTAGAATGACTTCAATGCATTTAAATCAATTAACGGCTCCTGCTTTGCTGGAATTGATCATAATTAAAGAAGAGCTGGAGAAGGGTCCATGGCTGAGTGAAATAATAGAAGAATTGAAGAAGAATGAGGAGTGTGTGGCTGACTTTTCTTTACAGCAGGGTGTGTTGAAGTAGAAAGGCAGAGTGGTGATTACTCGGCGTTATTACCCACTATATTACATACTTATCATGATTCTGTGTTTGGTGGACATTCAGGATTTTTTAGGACTTATAAACGGCTGAAGGGAGAGCTGTATTGGGAAGGTATGAAGGGTGATGTGAAGAAATATTGTGAGAAATGTGTCGTATGTCAGCATCCTAAGTCCTTGCCGTTGTCTCCAGCAGGATTATTGATGCCTTTAGAGATTCCGGATGCTGTATTGAGCCACATCTTTATGGATTTCATTGATGGGTTACCAAAGGCGGCTGGTTTCAATGTGATATTAGTAGCGGTGGACAGATTGAGTAAGTAGGCACATT

mRNA sequence

ATGCAACTTTGCCCGGGCAAGAGTATAATATTTGGGGCATATTGTTCGAGAAAAGGAGTGAAAGTTGACCCGAAAAAAACTAGAACAATAAAGGAATGGCCAATACCGACAAATGTGCGGGAAGCAGGAGCTTACGAGTGGACGAAAGAGACTCAAGAAGCTTTTGAGAAATTAAAGAATGCTATGATGACATTGCCAGTGCTAGCATTACCTAATTTCAATTTGCCCTTCGAGATTGAAACTAATGCATCTGGCAATGGGATTGGAGTAGTGTTGATCCAATCACACTTTGTTCGTGAGGGATCGGCTAAACCGATTTATGAATGGGAGTTAATGGCAGTGGAGTTAGTTGTGCAACGGTGGAGACCGAAATGTTATACGTCTGAGGTAATCTATAAACCGGGGTTGGAGAATAAGGTTGCTGATGCACTCTCTAGAATGACTTCAATGCATTTAAATCAATTAACGGCTCCTGCTTTGCTGGAATTGATCATAATTAAAGAAGAGCTGGAGAAGGGTCCATGGCTGAGTGAAATAATAGAAGAATTGAAGAAGAATGAGGAGTGTGTGGCTGACTTTTCTTTACAGCAGGGATTTTTTAGGACTTATAAACGGCTGAAGGGAGAGCTGTATTGGGAAGGTATGAAGGGTGATGTGAAGAAATATTGTGAGAAATGTGTCGTATGTCAGCATCCTAAGTCCTTGCCGTTGTCTCCAGCAGGATTATTGATGCCTTTAGAGATTCCGGATGCTGTATTGAGCCACATCTTTATGGATTTCATTGATGGGTTACCAAAGGCGGCTGGTTTCAATGTGATATTAGTAGCGGTGGACAGATTGAGTAAGTAGGCACATT

Coding sequence (CDS)

ATGCAACTTTGCCCGGGCAAGAGTATAATATTTGGGGCATATTGTTCGAGAAAAGGAGTGAAAGTTGACCCGAAAAAAACTAGAACAATAAAGGAATGGCCAATACCGACAAATGTGCGGGAAGCAGGAGCTTACGAGTGGACGAAAGAGACTCAAGAAGCTTTTGAGAAATTAAAGAATGCTATGATGACATTGCCAGTGCTAGCATTACCTAATTTCAATTTGCCCTTCGAGATTGAAACTAATGCATCTGGCAATGGGATTGGAGTAGTGTTGATCCAATCACACTTTGTTCGTGAGGGATCGGCTAAACCGATTTATGAATGGGAGTTAATGGCAGTGGAGTTAGTTGTGCAACGGTGGAGACCGAAATGTTATACGTCTGAGGTAATCTATAAACCGGGGTTGGAGAATAAGGTTGCTGATGCACTCTCTAGAATGACTTCAATGCATTTAAATCAATTAACGGCTCCTGCTTTGCTGGAATTGATCATAATTAAAGAAGAGCTGGAGAAGGGTCCATGGCTGAGTGAAATAATAGAAGAATTGAAGAAGAATGAGGAGTGTGTGGCTGACTTTTCTTTACAGCAGGGATTTTTTAGGACTTATAAACGGCTGAAGGGAGAGCTGTATTGGGAAGGTATGAAGGGTGATGTGAAGAAATATTGTGAGAAATGTGTCGTATGTCAGCATCCTAAGTCCTTGCCGTTGTCTCCAGCAGGATTATTGATGCCTTTAGAGATTCCGGATGCTGTATTGAGCCACATCTTTATGGATTTCATTGATGGGTTACCAAAGGCGGCTGGTTTCAATGTGATATTAGTAGCGGTGGACAGATTGAGTAAGTAG

Protein sequence

MQLCPGKSIIFGAYCSRKGVKVDPKKTRTIKEWPIPTNVREAGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQSHFVREGSAKPIYEWELMAVELVVQRWRPKCYTSEVIYKPGLENKVADALSRMTSMHLNQLTAPALLELIIIKEELEKGPWLSEIIEELKKNEECVADFSLQQGFFRTYKRLKGELYWEGMKGDVKKYCEKCVVCQHPKSLPLSPAGLLMPLEIPDAVLSHIFMDFIDGLPKAAGFNVILVAVDRLSK*
Homology
BLAST of CSPI07G02040 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-09
Identity = 85/343 (24.78%), Postives = 122/343 (35.57%), Query Frame = 0

Query: 46   EWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVL-----------IQ 105
            +WT++  +A +KLK+A+   PVL   N    + + T+AS +GIG VL           + 
Sbjct: 857  QWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 916

Query: 106  SHFVR--EGSAK--PIYEWELMAVELV--------------------------------- 165
             +F +  E + K  P  E EL+ +                                    
Sbjct: 917  GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 976

Query: 166  -VQRWRP--KCYTSEVIYKPGLENKVADALSRMTSMHLNQLTAPALLE------------ 225
             VQRW      Y   + Y  G +N VADA+SR       + + P   E            
Sbjct: 977  RVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLC 1036

Query: 226  ---LIIIKEELEKGPWLS------------EIIEELKKN-----------EECVADFSLQ 283
               LI +KE  +                  E+ E  +KN           +  V     Q
Sbjct: 1037 SAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQ 1096

BLAST of CSPI07G02040 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-09
Identity = 58/229 (25.33%), Postives = 81/229 (35.37%), Query Frame = 0

Query: 12  GAYCSRKGVKVDPKKTRTIKEWPIPTNVREAG---------------------------- 71
           G  C+ KG+  D KK   I+ +P+P +   A                             
Sbjct: 520 GHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCK 579

Query: 72  ---AYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQSH---- 131
               +EWT E Q+AF  LK+ ++   +L  P+F+  F I T+AS    G VL Q+H    
Sbjct: 580 KNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQ 639

Query: 132 ---------FVREGSAKPIYEWELMAVELVVQRWRPKCYTSE------------------ 161
                    F +  S K   E EL A+   +  +RP  Y                     
Sbjct: 640 LPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVN 699

BLAST of CSPI07G02040 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-09
Identity = 86/343 (25.07%), Postives = 121/343 (35.28%), Query Frame = 0

Query: 46   EWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVL-----------IQ 105
            +WT++  +A EKLK A+   PVL   N    + + T+AS +GIG VL           + 
Sbjct: 883  QWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 942

Query: 106  SHFVR--EGSAK--PIYEWELMAVELV--------------------------------- 165
             +F +  E + K  P  E EL+ +                                    
Sbjct: 943  GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 1002

Query: 166  -VQRWRP--KCYTSEVIYKPGLENKVADALSRMTSMHLNQLTAPALLE------------ 225
             VQRW      Y   + Y  G +N VADA+SR       + + P   E            
Sbjct: 1003 RVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLC 1062

Query: 226  ---LIIIKEELEKGPWLS------------EIIEELKKN-----------EECVADFSLQ 283
               LI +KE  +                  E+ E  +KN           +  V     Q
Sbjct: 1063 SAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQ 1122

BLAST of CSPI07G02040 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 63/240 (26.25%), Postives = 88/240 (36.67%), Query Frame = 0

Query: 12  GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE-----------------------------A 71
           G   +  G+K DPKK R I E P PT+V+E                              
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

Query: 72  GAYEWTKETQ-------------EAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIG 131
           G Y   K +Q             ++F  LK+ + +  +LA P F  PF + T+AS   IG
Sbjct: 388 GLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIG 447

Query: 132 VVLIQSHFVREGSAKPI----------------YEWELMAV------------------- 157
            VL Q     +G  +PI                 E E++A+                   
Sbjct: 448 AVLSQDD---QGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKV 507

BLAST of CSPI07G02040 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.4e-05
Identity = 63/267 (23.60%), Postives = 99/267 (37.08%), Query Frame = 0

Query: 12  GAYCSRKGVKVDPKKTRTIKEWPIPTNVREAGAY-------------------------- 71
           G   S+ G K DP+K + I+E+P P  V +  ++                          
Sbjct: 387 GFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILK 446

Query: 72  ----------------EWTKETQEAFEKLKNAMMTLPV-LALPNFNLPFEIETNASGNGI 131
                           E+ +  + AF++L+N + +  V L  P+F  PF++ T+AS +GI
Sbjct: 447 GENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGI 506

Query: 132 GVVLIQ--------SHFVREGSAK-PIYEWELMAV------------------------- 190
           G VL Q        S  +++        E EL+A+                         
Sbjct: 507 GAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQP 566

BLAST of CSPI07G02040 vs. ExPASy TrEMBL
Match: A0A5A7U8A5 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001420 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 2.5e-76
Identity = 172/351 (49.00%), Postives = 214/351 (60.97%), Query Frame = 0

Query: 12  GAYCSRKGVKVDPKKTRTIKEWPIPTNVREAGAYEWTKETQEAFEKLKNAMMTLPVLALP 71
           G Y S KG++VDP+K R ++EWP P+N   AGAY+WT+ET+ AFEKLK AMMTLPVLA+P
Sbjct: 38  GHYISVKGIEVDPEKIRAVREWPAPSN---AGAYKWTEETEAAFEKLKKAMMTLPVLAMP 97

Query: 72  NFNLPFEIETNASGNGIGVVLIQ-----SHFVR----EGSAKPIYEWELMAVELVVQRWR 131
           +FNLPFEIE++ASG G+G VL+Q     ++F +       A+P+YE EL+AV   VQRWR
Sbjct: 98  DFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVWAVQRWR 157

Query: 132 PKC------------------------------------YTSEVIYKPGLENKVADALSR 191
           P                                      Y+ EV+YKPG+ENK  DALSR
Sbjct: 158 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGMENKAVDALSR 217

Query: 192 M-TSMHLNQLTAPALLELIIIKEELEKGPWLSEI---IEE--------------LKKNEE 251
           M  + HLNQLTAPALL++ +I+EE+ K P L EI   IEE              LK  E 
Sbjct: 218 MGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTCHQGILKFKER 277

Query: 252 CVAD-----------------FSLQQGFFRTYKRLKGELYWEGMKGDVKKYCEKCVVCQH 283
            V                   F    GF +TYKR+ GELYW+GMK DV+KYCE+C++CQ 
Sbjct: 278 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELYWKGMKKDVQKYCEECMICQK 337

BLAST of CSPI07G02040 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 4.2e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 882  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 941

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 942  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 1001

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 1002 FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1061

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1062 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1121

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1122 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1181

BLAST of CSPI07G02040 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 4.2e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 882  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 941

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 942  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 1001

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 1002 FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1061

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1062 QQWIVKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1121

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1122 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1181

BLAST of CSPI07G02040 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 4.2e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 822  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 881

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 882  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 941

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 942  FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1001

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1002 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1061

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1062 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1121

BLAST of CSPI07G02040 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 4.2e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 822  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 881

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 882  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 941

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 942  FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1001

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1002 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1061

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1062 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1121

BLAST of CSPI07G02040 vs. NCBI nr
Match: KAA0051400.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 295.4 bits (755), Expect = 5.1e-76
Identity = 172/351 (49.00%), Postives = 214/351 (60.97%), Query Frame = 0

Query: 12  GAYCSRKGVKVDPKKTRTIKEWPIPTNVREAGAYEWTKETQEAFEKLKNAMMTLPVLALP 71
           G Y S KG++VDP+K R ++EWP P+N   AGAY+WT+ET+ AFEKLK AMMTLPVLA+P
Sbjct: 38  GHYISVKGIEVDPEKIRAVREWPAPSN---AGAYKWTEETEAAFEKLKKAMMTLPVLAMP 97

Query: 72  NFNLPFEIETNASGNGIGVVLIQ-----SHFVR----EGSAKPIYEWELMAVELVVQRWR 131
           +FNLPFEIE++ASG G+G VL+Q     ++F +       A+P+YE EL+AV   VQRWR
Sbjct: 98  DFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVWAVQRWR 157

Query: 132 PKC------------------------------------YTSEVIYKPGLENKVADALSR 191
           P                                      Y+ EV+YKPG+ENK  DALSR
Sbjct: 158 PYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGMENKAVDALSR 217

Query: 192 M-TSMHLNQLTAPALLELIIIKEELEKGPWLSEI---IEE--------------LKKNEE 251
           M  + HLNQLTAPALL++ +I+EE+ K P L EI   IEE              LK  E 
Sbjct: 218 MGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTCHQGILKFKER 277

Query: 252 CVAD-----------------FSLQQGFFRTYKRLKGELYWEGMKGDVKKYCEKCVVCQH 283
            V                   F    GF +TYKR+ GELYW+GMK DV+KYCE+C++CQ 
Sbjct: 278 LVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELYWKGMKKDVQKYCEECMICQK 337

BLAST of CSPI07G02040 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 8.7e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 822  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 881

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 882  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 941

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 942  FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1001

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1002 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1061

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1062 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1121

BLAST of CSPI07G02040 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 8.7e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 882  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 941

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 942  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 1001

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 1002 FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1061

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1062 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1121

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1122 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1181

BLAST of CSPI07G02040 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 8.7e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 822  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 881

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 882  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 941

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 942  FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1001

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1002 QQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1061

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1062 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1121

BLAST of CSPI07G02040 vs. NCBI nr
Match: KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 8.7e-76
Identity = 171/381 (44.88%), Postives = 219/381 (57.48%), Query Frame = 0

Query: 12   GAYCSRKGVKVDPKKTRTIKEWPIPTNVRE------------------------------ 71
            G Y S+KG++VDP+K R +KEWP P NVRE                              
Sbjct: 882  GHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLK 941

Query: 72   AGAYEWTKETQEAFEKLKNAMMTLPVLALPNFNLPFEIETNASGNGIGVVLIQ-----SH 131
            +GAY+WT+ET+ AFEKLK AMMTLPVLA+P+FNLPFEIE++ASG G+G VL+Q     ++
Sbjct: 942  SGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAY 1001

Query: 132  FVR----EGSAKPIYEWELMAVELVVQRWRPKC--------------------------- 191
            F +       A+P+YE ELMAV   VQRWRP                             
Sbjct: 1002 FSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQY 1061

Query: 192  ---------YTSEVIYKPGLENKVADALSRM-TSMHLNQLTAPALLELIIIKEELEKGPW 251
                     Y+ EV+YKPGLENK ADALSR+  + HLNQLTAPALL++ +I++E+ K P 
Sbjct: 1062 QQWIVKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPA 1121

Query: 252  LSEIIEELKKNEECVADFSLQQ----------------------------------GFFR 283
            L EI+  +++    +  ++  Q                                  GF R
Sbjct: 1122 LREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLR 1181

BLAST of CSPI07G02040 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.0e-05
Identity = 31/92 (33.70%), Postives = 38/92 (41.30%), Query Frame = 0

Query: 16  SRKGVKVDPKKTRTIKEWPIPTNVRE-------AGAY----------------------- 75
           S +GV  DP K   +  WP P N  E        G Y                       
Sbjct: 40  SGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSL 99

Query: 76  EWTKETQEAFEKLKNAMMTLPVLALPNFNLPF 78
           +WT+    AF+ LK A+ TLPVLALP+  LPF
Sbjct: 100 KWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q993157.3e-0924.78Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P103949.6e-0925.33Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Q7LHG59.6e-0925.07Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q8I7P91.2e-0826.25Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P104016.4e-0523.60Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Match NameE-valueIdentityDescription
A0A5A7U8A52.5e-7649.00Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3CXB14.2e-7644.88Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2S14.2e-7644.88Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DI734.2e-7644.88Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U6J34.2e-7644.88Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAA0051400.15.1e-7649.00putative retroelement pol polyprotein [Cucumis melo var. makuwa][more]
TYK23090.18.7e-7644.88Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15990.18.7e-7644.88Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049776.18.7e-7644.88Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049630.18.7e-7644.88Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
ATMG00860.15.0e-0533.70DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 47..96
e-value: 2.7E-15
score: 56.2
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 197..233
e-value: 8.3E-11
score: 41.8
NoneNo IPR availableGENE3D1.10.340.70coord: 160..231
e-value: 6.1E-10
score: 41.2
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 33..94
NoneNo IPR availablePANTHERPTHR24559:SF360SUBFAMILY NOT NAMEDcoord: 130..269
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 130..269
NoneNo IPR availablePANTHERPTHR24559:SF360SUBFAMILY NOT NAMEDcoord: 33..94
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 40..75
e-value: 1.9E-5
score: 26.6
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 10..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G02040.1CSPI07G02040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process