CSPI07G00940 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G00940
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr7: 889081 .. 889743 (+)
RNA-Seq ExpressionCSPI07G00940
SyntenyCSPI07G00940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAATGGAACCCTTTGTGGCTTTTACAAAATCGTCAAACGAGAAATCTTTAACACAAAGCCTTCTTCATCATATAACTTCTCTCGGCCCAGTACACACAACTTTTCCATCGCTCTATCTTGTTTAGAACTGCAGTACTACTAAACAAGAGAGAGTGAGTGTGAGTGTGAGTGTTTGTGTGAGTGTGAGTGTCTGCAGATTGATTTTGATTTTTGTTTTTGTTCCTATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTAATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAGAAGAAAAATTGAAGAAGCCCCTCTAGCCAACAAATGAAACTTCTACTTGAAGAGAAGAGAAGAGGGATGATTTGTATTTGTAATTCTTTTTTAACATTCTTTTTAAAAGGGA

mRNA sequence

TATAAATGGAACCCTTTGTGGCTTTTACAAAATCGTCAAACGAGAAATCTTTAACACAAAGCCTTCTTCATCATATAACTTCTCTCGGCCCAGTACACACAACTTTTCCATCGCTCTATCTTGTTTAGAACTGCAGTACTACTAAACAAGAGAGAGTGAGTGTGAGTGTGAGTGTTTGTGTGAGTGTGAGTGTCTGCAGATTGATTTTGATTTTTGTTTTTGTTCCTATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTAATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAGAAGAAAAATTGAAGAAGCCCCTCTAGCCAACAAATGAAACTTCTACTTGAAGAGAAGAGAAGAGGGATGATTTGTATTTGTAATTCTTTTTTAACATTCTTTTTAAAAGGGA

Coding sequence (CDS)

ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTAATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTGAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

Protein sequence

MNCFLAKCGTLNQVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR*
Homology
BLAST of CSPI07G00940 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDG+NRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

BLAST of CSPI07G00940 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDG+NRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

BLAST of CSPI07G00940 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           M CF  KCG   QV RI+ D  ++K  + ++DD   + EAP  +   R+  +RV SKERK
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD--TVDEAPVEISNQRQHQQRVDSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
               ++ L+R    + E  GWLAAWLEEAEG  EKDE+K L++  KR
Sbjct: 61  ----TTSLKRG--GKSESSGWLAAWLEEAEGHGEKDEIKALKEAAKR 99

BLAST of CSPI07G00940 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKE 60
           M+CFL  CG   Q +RI+ D N RK +K+ R D IV+ E P T K  +  +  RRV   E
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNE 60

Query: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAE-GEREKDEVKELE 103
           R+    +SRLQR+   RVE GGWLAAWLEEAE  E EK   K LE
Sbjct: 61  RE----TSRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 99

BLAST of CSPI07G00940 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 13  QVLRIREDGNNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERKMMPSSSRLQRSQ 72
           QV RI +D  ++K RK +RDD   +G+  + +   R+  RRV +KE+K M   S   R +
Sbjct: 130 QVSRIYDDEGSKKSRKTQRDD--TVGDTLEAIGNKRRRQRRVDNKEQKTM---SFTLRQR 189

Query: 73  IERVELGGWLAAWLEEAEGEREKDEVKELEK 104
            ER ELGGWLAAWLEEAE   EKDE+K LE+
Sbjct: 190 GERNELGGWLAAWLEEAESHTEKDEIKALEE 215

BLAST of CSPI07G00940 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-06
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 15  LRIREDGNNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKERKMMPSSSRLQRSQ 74
           +RI+ D N RK +K+ R D IV+ E P T K  +  +  RRV   ER+    +SRLQR+ 
Sbjct: 226 MRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNERE----TSRLQRTD 285

Query: 75  IERVELGGWLAAWLEEAE-GEREKDEVKELE 103
             RVE GGWLAAWLEEAE  E EK   K LE
Sbjct: 286 GGRVESGGWLAAWLEEAEMKELEKAHAKGLE 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1A52.9e-4999.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN43248.15.9e-4999.07hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6589009.11.2e-0944.86hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572110.11.2e-0950.48hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589008.11.7e-0849.45hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.18.1e-0650.55Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G00940.1CSPI07G00940.1mRNA