CSPI07G00860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G00860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	glycine-rich protein 2-like
Location	Chr7: 818814 .. 820031 (+)
RNA-Seq Expression	CSPI07G00860
Synteny	CSPI07G00860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCTCCCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTTCAGTTGTTGGGTTTTCTTTGTGAAAGAAGGAGATCGAGGAAATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCTATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCTGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGAGGCGGCGGCGGCGCTGGTGGTGGAGGTGGTTACTCAAGTGGAGGTGGTTATGGAGGAGGCGGTGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGCTATGGTGGTGGGGGTTATGGAGGTGGTGGCGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGTGGTGGTGGTGCTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCGTCGCGTAAATTGGTGACCAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTTACCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCATTTTCTTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAAAGTTGAATATCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCATCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACACGGCTTAAGATCCTTTTTCTTTCCAGTTCATTTCTATTGAAATTATCTCTCTTGATTGAATCAATGC

mRNA sequence

CTTTTTCTCCCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTTCAGTTGTTGGGTTTTCTTTGTGAAAGAAGGAGATCGAGGAAATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCTATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCTGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGAGGCGGCGGCGGCGCTGGTGGTGGAGGTGGTTACTCAAGTGGAGGTGGTTATGGAGGAGGCGGTGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGCTATGGTGGTGGGGGTTATGGAGGTGGTGGCGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGTGGTGGTGGTGCTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCGTCGCGTAAATTGGTGACCAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTCCTTTACCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCATTTTCTTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAAAGTTGAATATCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCATCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACACGGCTTAAGATCCTTTTTCTTTCCAGTTCATTTCTATTGAAATTATCTCTCTTGATTGAATCAATGC

Coding sequence (CDS)

ATGGGTGAAAGGGTTAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCTATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCTGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGAGGAGGAGGCGGCGGCGGCGCTGGTGGTGGAGGTGGTTACTCAAGTGGAGGTGGTTATGGAGGAGGCGGTGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGTGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGCTATGGTGGTGGGGGTTATGGAGGTGGTGGCGGTGGTGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGCGGTGGTGGTGGTGCTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Protein sequence

MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGGGGGGGAGNCYSCGESGHFARECPSSGR*

Homology

[Close]

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.4e-50
Identity = 151/211 (71.56%), Postives = 163/211 (77.25%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DG
Sbjct: 6   GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R+KAVDVTGP  A+VQG RGGGGGGGG GGGG     GGYGGGG GG    GGG  G+ G
Sbjct: 66  RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRY 181
           G G GG   YGGGGGGYGGGG  GGGG GGG  CFKCGE+GH ARDC QSG  GGGG R+
Sbjct: 126 GGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGG-GGGGGRF 185

Query: 182 GGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           GGGGGGGGG G CY CGE GHFAREC S GR
Sbjct: 186 GGGGGGGGG-GGCYKCGEDGHFARECTSGGR 214

[Close]

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39
Identity = 129/215 (60.00%), Postives = 146/215 (67.91%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA++V+GP  A VQG+ GGGG  GG GG GG       GGG GGG   RGGG Y    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGG-------GGGRGGG---RGGGSY---- 131

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG---SQGGGG 181
                        GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G   S GGGG
Sbjct: 132 -------------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGG 191

Query: 182 DRYGGGGGGGGGAG--NCYSCGESGHFARECPSSG 212
            RYG GGGGGGG G  +CYSCGESGHFAR+C S G
Sbjct: 192 GRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.6e-38
Identity = 129/226 (57.08%), Postives = 146/226 (64.60%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA+DV+GP  A VQG+ GGG  GG           GG+GGG GGGR            
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGG----------RGGFGGGRGGGR------------ 127

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ----------- 181
           GSG    GGYGGGGGGYG    G GGGG GG  C+KCGE GHMARDC +           
Sbjct: 128 GSG----GGYGGGGGGYG----GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGG 187

Query: 182 ---SGSQGGGGDRYGGGG-GGGGGAGNCYSCGESGHFARECPSSGR 213
               G  GGGG  YGGGG GGGGG G+CYSCGESGHFAR+C S GR
Sbjct: 188 YGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.0e-18
Identity = 114/217 (52.53%), Postives = 132/217 (60.83%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGGGGGAGGGGGYSS--GGGYGG---GGGGGRGRRGG 123
           KA++VT PG  S+      SRG GG     G  G  +    GG GG   GGGGGR R GG
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR-RSGG 129

Query: 124 GGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
            G  +  G  G         GGG        GGGGGGG  C+ CGE GH+A+DC      
Sbjct: 130 EGECYMCGDVGHFARDCRQSGGG------NSGGGGGGGRPCYSCGEVGHLAKDC----RG 189

Query: 184 GGGGDRYGGGGGGGGGAGNCYSCGESGHFARECPSSG 212
           G GG+RYGGGGG G G   CY CG  GHFAR+C  +G
Sbjct: 190 GSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10
Identity = 104/215 (48.37%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGAGGG-------GGYSSGGGYGGGGGGGRGR-R 123
           KAV+VT PG  S++    SRG G   GG G G       G  S   G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG 183
           GG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q  
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQKS 189

Query: 184 SQGGGGDRYGGGGGGGGGAGNCYSCGESGHFAREC 208
              G GD+ G   GG  G   CY+CG+ GHFAR+C
Sbjct: 190 V--GNGDQRGAVKGGNDG---CYTCGDVGHFARDC 213

[Close]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 YGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           YGGGGGGGGG GNCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.6e-74
Identity = 193/201 (96.02%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131
           GEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGY
Sbjct: 61  GEASVQGSRGGGGGGGG-GGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGY 120

Query: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGGGGGGGA 191
           GGGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGDRYGGGGGG    
Sbjct: 121 GGGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGDRYGGGGGG---- 180

Query: 192 GNCYSCGESGHFARECPSSGR 213
           GNCYSCGESGHFARECPSSGR
Sbjct: 181 GNCYSCGESGHFARECPSSGR 194

[Close]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.2e-70
Identity = 191/214 (89.25%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRG YGG GGG  GGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQ-GGGDR 180

Query: 181 Y--GGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           Y  GGGGGGGGG GNCYSCGESGHFARECPSSGR
Sbjct: 181 YSGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.4e-68
Identity = 188/212 (88.68%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRG YGG GGG  GGGY G GGGGGGGACFKCGE GHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGSYGGSGGGGYGGGY-GSGGGGGGGACFKCGEAGHMARDCYQSGSQ-GGGDR 180

Query: 181 YGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           Y GGGGGGG  GNCYSCGESGHFARECPSSGR
Sbjct: 181 YSGGGGGGG--GNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.1e-63
Identity = 166/212 (78.30%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GR KA+DVTGPGE+SVQGSRGGGGGGGG                    RG R GGGYGFN
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGGGGGGGGE-------------------RGSR-GGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GG GGGGRGGYG GGGGY        GGGGGGG CFKCGETGHMARDCYQ GSQ GGGDR
Sbjct: 121 GG-GGGGRGGYGRGGGGY--------GGGGGGGGCFKCGETGHMARDCYQGGSQ-GGGDR 180

Query: 181 YGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           YGGGGGGGG  GNCYSCGESGHFAR+C SSGR
Sbjct: 181 YGGGGGGGG--GNCYSCGESGHFARDCQSSGR 180

[Close]

BLAST of CSPI07G00860 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 339.3 bits (869), Expect = 2.3e-89
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 YGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           YGGGGGGGGG GNCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of CSPI07G00860 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 307.4 bits (786), Expect = 9.8e-80
Identity = 201/213 (94.37%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSS-GGGYGGGGGGGRGRRGGGGYGF 120
           GRSKAVDVTGPGEASVQGSR     GGG+GGGGGYSS GGGYGGGGGGGRGRRGGGGYGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSR-----GGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGF 120

Query: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180
           NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGD
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGD 180

Query: 181 RYGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           RYGGGGGGG   GNCYSCGESGHFARECPSSGR
Sbjct: 181 RYGGGGGGG---GNCYSCGESGHFARECPSSGR 204

[Close]

BLAST of CSPI07G00860 vs. NCBI nr
Match: XP_008448117.2 (PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 193/201 (96.02%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131
           GEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGY
Sbjct: 61  GEASVQGSRGGGGGGGG-GGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGY 120

Query: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGGGGGGGA 191
           GGGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGDRYGGGGGG    
Sbjct: 121 GGGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGDRYGGGGGG---- 180

Query: 192 GNCYSCGESGHFARECPSSGR 213
           GNCYSCGESGHFARECPSSGR
Sbjct: 181 GNCYSCGESGHFARECPSSGR 194

[Close]

BLAST of CSPI07G00860 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 2.4e-70
Identity = 191/214 (89.25%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRG YGG GGG  GGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQ-GGGDR 180

Query: 181 Y--GGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           Y  GGGGGGGGG GNCYSCGESGHFARECPSSGR
Sbjct: 181 YSGGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of CSPI07G00860 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-68
Identity = 188/212 (88.68%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ GGGG   GGGY GGGGGGRGRR  GGYGFN
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGG---GGGY-GGGGGGRGRR--GGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180
           GGSGGGGRG YGG GGG  GGGY G GGGGGGGACFKCGE GHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGSYGGSGGGGYGGGY-GSGGGGGGGACFKCGEAGHMARDCYQSGSQ-GGGDR 180

Query: 181 YGGGGGGGGGAGNCYSCGESGHFARECPSSGR 213
           Y GGGGGGG  GNCYSCGESGHFARECPSSGR
Sbjct: 181 YSGGGGGGG--GNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of CSPI07G00860 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-40
Identity = 129/215 (60.00%), Postives = 146/215 (67.91%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA++V+GP  A VQG+ GGGG  GG GG GG       GGG GGG   RGGG Y    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGG-------GGGRGGG---RGGGSY---- 131

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG---SQGGGG 181
                        GGGYGG G GG GGGGG  +CFKCGE GHMAR+C Q G   S GGGG
Sbjct: 132 -------------GGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGG 191

Query: 182 DRYGGGGGGGGGAG--NCYSCGESGHFARECPSSG 212
            RYG GGGGGGG G  +CYSCGESGHFAR+C S G
Sbjct: 192 GRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of CSPI07G00860 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 159.1 bits (401), Expect = 4.0e-39
Identity = 129/226 (57.08%), Postives = 146/226 (64.60%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 121
           R KA+DV+GP  A VQG+ GGG  GG           GG+GGG GGGR            
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGG----------RGGFGGGRGGGR------------ 127

Query: 122 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQ----------- 181
           GSG    GGYGGGGGGYG    G GGGG GG  C+KCGE GHMARDC +           
Sbjct: 128 GSG----GGYGGGGGGYG----GRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGG 187

Query: 182 ---SGSQGGGGDRYGGGG-GGGGGAGNCYSCGESGHFARECPSSGR 213
               G  GGGG  YGGGG GGGGG G+CYSCGESGHFAR+C S GR
Sbjct: 188 YGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of CSPI07G00860 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-19
Identity = 114/217 (52.53%), Postives = 132/217 (60.83%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGGGGGAGGGGGYSS--GGGYGG---GGGGGRGRRGG 123
           KA++VT PG  S+      SRG GG     G  G  +    GG GG   GGGGGR R GG
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGR-RSGG 129

Query: 124 GGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
            G  +  G  G         GGG        GGGGGGG  C+ CGE GH+A+DC      
Sbjct: 130 EGECYMCGDVGHFARDCRQSGGG------NSGGGGGGGRPCYSCGEVGHLAKDC----RG 189

Query: 184 GGGGDRYGGGGGGGGGAGNCYSCGESGHFARECPSSG 212
           G GG+RYGGGGG G G   CY CG  GHFAR+C  +G
Sbjct: 190 GSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of CSPI07G00860 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 104/215 (48.37%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGAGGG-------GGYSSGGGYGGGGGGGRGR-R 123
           KAV+VT PG  S++    SRG G   GG G G       G  S   G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSG 183
           GG G    G +G   R     G G   G   GG  G      C+ CG+ GH+ARDC Q  
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG------CYTCGDVGHVARDCTQKS 189

Query: 184 SQGGGGDRYGGGGGGGGGAGNCYSCGESGHFAREC 208
              G GD+ G   GG  G   CY+CG+ GHFAR+C
Sbjct: 190 V--GNGDQRGAVKGGNDG---CYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of CSPI07G00860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	6.4e-50	71.56	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	3.0e-39	60.00	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	5.6e-38	57.08	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	5.0e-18	52.53	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.7e-10	48.37	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of CSPI07G00860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M5	1.1e-89	99.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A1S3BIY4	6.6e-74	96.02	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JLC0	1.2e-70	89.25	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A6J1ERG9	1.4e-68	88.68	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1GLV7	3.1e-63	78.30	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of CSPI07G00860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658593.1	2.3e-89	99.53	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_038888820.1	9.8e-80	94.37	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_008448117.2	1.4e-73	96.02	PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis me...	[more]
XP_022989065.1	2.4e-70	89.25	glycine-rich protein 2-like [Cucurbita maxima]	[more]
XP_022928350.1	3.0e-68	88.68	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]

BLAST of CSPI07G00860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	2.1e-40	60.00	glycine-rich protein 2B	[more]
AT4G38680.1	4.0e-39	57.08	glycine rich protein 2	[more]
AT2G17870.1	3.5e-19	52.53	cold shock domain protein 3	[more]
AT4G36020.1	1.2e-11	48.37	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 7..22 score: 63.69 coord: 28..37 score: 64.04 coord: 43..61 score: 40.8
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 1.4E-24 score: 85.7
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.374826
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 8.10346E-26 score: 93.0269
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 193..209 e-value: 2.2E-5 score: 33.9 coord: 154..170 e-value: 1.4E-5 score: 34.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 154..168 e-value: 2.5E-7 score: 30.5 coord: 193..209 e-value: 1.6E-7 score: 31.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 194..209 score: 11.284516
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 155..168 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 6.1E-23 score: 92.2
None	No IPR available	GENE3D	4.10.60.10		coord: 190..212 e-value: 3.1E-7 score: 31.9 coord: 150..178 e-value: 2.4E-7 score: 32.3
None	No IPR available	GENE3D	2.40.50.140		coord: 2..81 e-value: 1.0E-27 score: 98.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..89
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..114
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..114
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 121..212
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 121..212
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 145..210
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G00860.1	CSPI07G00860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding