CSPI07G00340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G00340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase
Location	Chr7: 396815 .. 397438 (+)
RNA-Seq Expression	CSPI07G00340
Synteny	CSPI07G00340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTAAGACTGGCAACGTTTCTTTTCCAGAAAGAAGCAAAATATTGGTGGAGATCAATTAAGGTTAAACAAGGAGATACTAATGATTAGGATTTAAATACTTTTATAGGTATTTTTGAAGATAAGTATTATCCAAGTACTTATCGGGAGATGAAGAGGGACAAATTTCTGCATTTGGAGCAGGAATCATTATCGGTAGCATATTATGGAGGGAAGTTTACAGAAATGTCAAGATATGTTGAAGTGTTAGTGGCAACCGAGATTGATCGTTGCTAGATGTTTGAAAGAGGTCTAAGGTAGGAAATCCTTACTCCTGTTACTTCAAGGACAAAGTGGACTGACTTCTCTGAGTTGGTTGAGACTACATTGCGAGTAGAGTAGAGCTTCTTGAAGGCAAGCCAACATTAGAATCAAGTCAAGGGATTTCATTAGTTAGTAATACCAAAGGACGGGAGCAACGACAATTTATTCCTGGTATATCAAGAAGAAGGGACTTTAAAACTCGATCGAGTGAAAAGACCTACAGGCAAGTTAGTGAAGGAAGTGTAGCCTTTCCAAGACAATCAAACAGAACAGGAACGATGTCTCAATCAAGACAGGAATCAAGAGCAAGTAACTGA

mRNA sequence

ATGAAAGATAAGTATTATCCAAGTACTTATCGGGAGATGAAGAGGGACAAATTTCTGCATTTGGAGCAGGAATCATTATCGGTAGCATATTATGGAGGGAAGTTTACAGAAATGTCAAGATATGTTGAAGTAGTAGAGCTTCTTGAAGGCAAGCCAACATTAGAATCAAGTCAAGGGATTTCATTAGTTAGTAATACCAAAGGACGGGAGCAACGACAATTTATTCCTGGTATATCAAGAAGAAGGGACTTTAAAACTCGATCGAGTGAAAAGACCTACAGGCAAGTTAGTGAAGGAAGTGTAGCCTTTCCAAGACAATCAAACAGAACAGGAACGATGTCTCAATCAAGACAGGAATCAAGAGCAAGTAACTGA

Coding sequence (CDS)

ATGAAAGATAAGTATTATCCAAGTACTTATCGGGAGATGAAGAGGGACAAATTTCTGCATTTGGAGCAGGAATCATTATCGGTAGCATATTATGGAGGGAAGTTTACAGAAATGTCAAGATATGTTGAAGTAGTAGAGCTTCTTGAAGGCAAGCCAACATTAGAATCAAGTCAAGGGATTTCATTAGTTAGTAATACCAAAGGACGGGAGCAACGACAATTTATTCCTGGTATATCAAGAAGAAGGGACTTTAAAACTCGATCGAGTGAAAAGACCTACAGGCAAGTTAGTGAAGGAAGTGTAGCCTTTCCAAGACAATCAAACAGAACAGGAACGATGTCTCAATCAAGACAGGAATCAAGAGCAAGTAACTGA

Protein sequence

MKDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVELLEGKPTLESSQGISLVSNTKGREQRQFIPGISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRTGTMSQSRQESRASN*

Homology

[Close]

BLAST of CSPI07G00340 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.0e-18
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVV---------ELLEGKP 61
           ++KYYP+TY E KRD+FL L+Q SLSVA Y  K+TE+SRY +V+          ++E K 
Sbjct: 303 EEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYTELSRYAKVIVASKSDRCRSIVEEKS 362

Query: 62  TLESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRT 115
           T++ S+G+S  S  +GREQR+F PG  +S  +DFK RS  K  RQ+S GS A+ RQS R 
Sbjct: 363 TMDLSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGS-AYQRQSQRA 422

[Close]

BLAST of CSPI07G00340 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVE--------LLEGKPT 61
           ++KYYP+TY E KRD+FL L+Q SLS+  Y  K+TE+SRY ++VE        ++E K T
Sbjct: 318 EEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELSRYAKLVETALPVEQSIIEEKST 377

Query: 62  LESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRTG 121
           ++ S+G+S  S  +GREQR+F PG  +S  +DFK RS  K  RQ+S GS A+ RQS R  
Sbjct: 378 MDLSRGVSTTSGFRGREQRRFTPGVNVSGCQDFKRRSDGKPLRQMSSGS-AYQRQSQRAS 437

Query: 122 TMS-------QSRQESRAS 124
             S       ++ QES AS
Sbjct: 438 NQSANSVAKLRTGQESVAS 455

[Close]

BLAST of CSPI07G00340 vs. ExPASy TrEMBL
Match: A0A5A7TF49 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold555G00100 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.7e-17
Identity = 71/147 (48.30%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVELLEG----------- 61
           +DKYYPSTY E KRD+FL L+Q SLSVA Y  K+TE+SRY  V+   E            
Sbjct: 99  EDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYANVIVASESDRCRRFERGLR 158

Query: 62  -----KPTLESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAF 121
                K  +E S+G S VS  +GREQR+F PG  IS R+DFK RS  +  R VS GSV F
Sbjct: 159 FEIQEKSAVELSRGTSTVSGFRGREQRRFTPGINISSRQDFKNRSRGQASRNVSYGSV-F 218

Query: 122 PRQSNRTGTM-------SQSRQESRAS 124
            RQS R  +        SQ  QES AS
Sbjct: 219 QRQSQRIPSQPIRSTIRSQQGQESIAS 244

[Close]

BLAST of CSPI07G00340 vs. ExPASy TrEMBL
Match: A0A5A7TLX3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00470 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVV------ELLEGKPTLE 61
           KDKYY STY E KRD+F  L+Q SLSVA Y  K+TE+SRY  V+       + E K T+E
Sbjct: 131 KDKYYASTYCEAKRDEFFGLKQGSLSVAEYERKYTELSRYAGVIVASESDSITEEKSTVE 190

Query: 62  SSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNR 110
            S+G S  S   G EQR+F PG  IS R+DFK RS  ++ R VS GSV F RQS R
Sbjct: 191 LSRGTSTTSGFNGCEQRRFTPGINISSRQDFKNRSKGQSSRNVSYGSV-FQRQSQR 245

[Close]

BLAST of CSPI07G00340 vs. ExPASy TrEMBL
Match: A0A5A7UFH6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00370 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 66/139 (47.48%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVELLEG---------KP 61
           +DKYYPSTY E KRD+FL L+Q SL VA Y  K+TE+SRY +V+   E          K 
Sbjct: 146 EDKYYPSTYCEAKRDEFLGLKQGSLLVAEYERKYTEISRYADVIVAYESDRCRSIAKEKS 205

Query: 62  TLESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSV------AFP 121
            +E S+G S  S  +GREQR+F PG  IS R+DFK RS  +  R +S GSV        P
Sbjct: 206 VVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGEASRNMSYGSVFQRQSQIIP 265

Query: 122 RQSNRTGTMSQSRQESRAS 124
            Q  R+   SQ  QES AS
Sbjct: 266 SQPIRSTVRSQPGQESIAS 284

[Close]

BLAST of CSPI07G00340 vs. NCBI nr
Match: KAE8645649.1 (hypothetical protein Csa_023944, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-20
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 65  NTKGREQRQFIPGISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRTGTMSQSRQESRASN 124
           NTKGREQRQFIP IS RRDFKTRSS+KTYRQVSEGSVAFPRQSNRTGTMSQSRQESRASN
Sbjct: 1   NTKGREQRQFIPRISSRRDFKTRSSKKTYRQVSEGSVAFPRQSNRTGTMSQSRQESRASN 60

[Close]

BLAST of CSPI07G00340 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-18
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVV---------ELLEGKP 61
           ++KYYP+TY E KRD+FL L+Q SLSVA Y  K+TE+SRY +V+          ++E K 
Sbjct: 303 EEKYYPTTYCEAKRDEFLELKQGSLSVAEYERKYTELSRYAKVIVASKSDRCRSIVEEKS 362

Query: 62  TLESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRT 115
           T++ S+G+S  S  +GREQR+F PG  +S  +DFK RS  K  RQ+S GS A+ RQS R 
Sbjct: 363 TMDLSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGS-AYQRQSQRA 422

[Close]

BLAST of CSPI07G00340 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVE--------LLEGKPT 61
           ++KYYP+TY E KRD+FL L+Q SLS+  Y  K+TE+SRY ++VE        ++E K T
Sbjct: 318 EEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELSRYAKLVETALPVEQSIIEEKST 377

Query: 62  LESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNRTG 121
           ++ S+G+S  S  +GREQR+F PG  +S  +DFK RS  K  RQ+S GS A+ RQS R  
Sbjct: 378 MDLSRGVSTTSGFRGREQRRFTPGVNVSGCQDFKRRSDGKPLRQMSSGS-AYQRQSQRAS 437

Query: 122 TMS-------QSRQESRAS 124
             S       ++ QES AS
Sbjct: 438 NQSANSVAKLRTGQESVAS 455

[Close]

BLAST of CSPI07G00340 vs. NCBI nr
Match: KAA0040646.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 71/147 (48.30%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVVELLEG----------- 61
           +DKYYPSTY E KRD+FL L+Q SLSVA Y  K+TE+SRY  V+   E            
Sbjct: 99  EDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYANVIVASESDRCRRFERGLR 158

Query: 62  -----KPTLESSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAF 121
                K  +E S+G S VS  +GREQR+F PG  IS R+DFK RS  +  R VS GSV F
Sbjct: 159 FEIQEKSAVELSRGTSTVSGFRGREQRRFTPGINISSRQDFKNRSRGQASRNVSYGSV-F 218

Query: 122 PRQSNRTGTM-------SQSRQESRAS 124
            RQS R  +        SQ  QES AS
Sbjct: 219 QRQSQRIPSQPIRSTIRSQQGQESIAS 244

[Close]

BLAST of CSPI07G00340 vs. NCBI nr
Match: KAA0042349.1 (uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK15472.1 uncharacterized protein E5676_scaffold477G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 2   KDKYYPSTYREMKRDKFLHLEQESLSVAYYGGKFTEMSRYVEVV------ELLEGKPTLE 61
           KDKYY STY E KRD+F  L+Q SLSVA Y  K+TE+SRY  V+       + E K T+E
Sbjct: 131 KDKYYASTYCEAKRDEFFGLKQGSLSVAEYERKYTELSRYAGVIVASESDSITEEKSTVE 190

Query: 62  SSQGISLVSNTKGREQRQFIPG--ISRRRDFKTRSSEKTYRQVSEGSVAFPRQSNR 110
            S+G S  S   G EQR+F PG  IS R+DFK RS  ++ R VS GSV F RQS R
Sbjct: 191 LSRGTSTTSGFNGCEQRRFTPGINISSRQDFKNRSKGQSSRNVSYGSV-FQRQSQR 245

The following BLAST results are available for this feature:

BLAST of CSPI07G00340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G00340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJX3	3.0e-18	48.39	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UT17	2.6e-17	46.04	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7TF49	5.7e-17	48.30	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TLX3	1.3e-16	53.45	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UFH6	1.7e-16	47.48	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CSPI07G00340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645649.1	8.7e-20	95.00	hypothetical protein Csa_023944, partial [Cucumis sativus]	[more]
TYK11835.1	6.3e-18	48.39	uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]	[more]
KAA0058280.1	5.3e-17	46.04	uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]	[more]
KAA0040646.1	1.2e-16	48.30	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042349.1	2.6e-16	53.45	uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of CSPI07G00340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G00340.1	CSPI07G00340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity