CSPI07G00170 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G00170
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionlate embryogenesis abundant protein-like
LocationChr7: 258831 .. 260495 (+)
RNA-Seq ExpressionCSPI07G00170
SyntenyCSPI07G00170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACGAGCAGAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCAGTGACGTCGAAACCAAGGTTGGCACGTCGCTTGGGTCACTAATGTTTGGTGGTGATGGTGAGGATGGTGGCAATGACTGCTTCTGATGTTAAAGGTAGTTCAGCAGGTGGTTCAGGAGGTGGCTTATGGCGACGGTGAGCAGCCGTTGCAGCCACATGAGAAGGATGAAGATTGTGGCTCTAGTTCCCACGGCAGGCTCTGCTTCGGTGAGTCCAACTTTCTGAACTATTACTTGTCGTTTCACTTTGGATATGTTCGGGATCAAAAATCACTTTTGTGATTTTCGTATTCTCTCTCAGTTTGTTCTTCCAATTTTCGTTTTTGTTTTGGTGTTTGCTCTTTTTAAACTTCCAATACTGCTCTCCGGGTTTGATTCAAATGTTGCAAACTTCACTAAACTTGTGATAGTGTTCCATCGTATTAAATTTCCGTCGTATCCTTATATTTCCATCAACATTGTTACAAGTTCGAGCTCGAGGAAATCACATTTCTATTCAATTATATATAAAAGATAATCATAGCAAAATGAGCTTGAAAATGTCACTGATCTAAATATCATAGAAAATAAACATACACGTGTTAGCTTGTTCAAAATTCTTAAACTATCAAAGGGAATTTTGTATAGATGACTTACAAATTTATGGAAGAATAAATTCAACGAGCTTTTTAAATTTGTTTTCTCTATTTTTGTTTTTTCTTCCTCGTTGCTCTCATTCTAGTGCACTATCGTCCTTGTGTCTTCTACATTTGGTTCGTTGGATATCTACTAAAACTATACAAGATGTCGTTGGCTATTACTCATTACTGGAGGAAGAATGAAACAACTTTGCTTAGTCTTATTCTTTTTCATGCAATCGTCTAAGGAAAATATAGGGAAGGAAGCATTTTTGGGTGAAATACCACAAGAAGGGTTTATAGAGTGAAATAGAATGAAAAATGGAGAGAGATAAGAAAAAAAAGAAGATATTAAAAAGGAATGAAACTGGTTATAAATTTCTGTTTTGAAAAACCAGGTCAAATAACATTTCTGCCTAATTTTTTTAGGTCAATCTATCACATTATTTGAGATAGAAATAAAAATTTATGGGCCTTCTACATAAACCTTATGTTTTGCTTCTAATATTAGTTCACTTCCTTTCCTTTCACTTATTATTAATTGCATTCATAGGAGAATCGAGTGGATGCCCAAAATTGAACATGATTGCGTGCTCAATGAAGTCGTTTTTCATAAATTTTGTTTATTATGCAATCAAAATGTAAAAAATAATAGTAATTACTATAAAGTGGACATATTTCACTTTCGACCAAAAGTTTAAACAGTTGAGCATACATGTTGAGCATCCGTTACTTAGCCTTGTTTAAAGTGTAATAATAATGATAAGTTAGATAATTTGATATCAATTTAGTCACCCACTATGAATTTGTTTGCATCTTGTTATCATTTCCATTCTGAGGAAGAATAAAATGATGACAGGAAGAGGGGGAAGAGGAAGAAGAAAAGACCAACATAGAATAAAAAGAGAAATTAAGGGGAGGAAGATATAAAGAGGAGTGCCTTCAGCTTCTCCCATGAC

mRNA sequence

ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACGAGCAGAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCAGTGACGTCGAAACCAAGGTAGTTCAGCAGGTGGTTCAGGAGGTGGCTTATGGCGACGGTGAGCAGCCGTTGCAGCCACATGAGAAGGATGAAGATTGTGGCTCTAGTTCCCACGGCAGGCTCTGCTTCGGAAGAGGGGGAAGAGGAAGAAGAAAAGACCAACATAGAATAAAAAGAGAAATTAAGGGGAGGAAGATATAAAGAGGAGTGCCTTCAGCTTCTCCCATGAC

Coding sequence (CDS)

ATGTACGGGACGAGCGTGGCAACCATCCGACTCACCGACGAGCAGAATCCGGTTGTGCTGACTGATGAACATGGCAACCCCATGTGGCTCAGTGACGTCGAAACCAAGGTAGTTCAGCAGGTGGTTCAGGAGGTGGCTTATGGCGACGGTGAGCAGCCGTTGCAGCCACATGAGAAGGATGAAGATTGTGGCTCTAGTTCCCACGGCAGGCTCTGCTTCGGAAGAGGGGGAAGAGGAAGAAGAAAAGACCAACATAGAATAAAAAGAGAAATTAAGGGGAGGAAGATATAA

Protein sequence

MYGTSVATIRLTDEQNPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKDEDCGSSSHGRLCFGRGGRGRRKDQHRIKREIKGRKI*
Homology
[Close]
BLAST of CSPI07G00170 vs. ExPASy TrEMBL
Match: A0A0A0K124 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004060 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.9e-34
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MYGTSVATIRLTDEQNPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD 60
          MYGTSVATIRLTDE NPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD
Sbjct: 1  MYGTSVATIRLTDEHNPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD 60

Query: 61 EDCGSSSHGRLCFG 75
          EDCGSSSH RLCFG
Sbjct: 61 EDCGSSSHVRLCFG 74

[Close]
BLAST of CSPI07G00170 vs. ExPASy TrEMBL
Match: A0A5A7ST54 (Putative dehydrin LEA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00530 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 1  MYGTSVATIR----------LTDEQNPVVLTDEHGNPMWLSDVETKVVQ 40
          MYGTSVATIR          LTDE NPVVLTDEHGNPMWL+D+ETKVV+
Sbjct: 1  MYGTSVATIRLTDKHGNPIQLTDEHNPVVLTDEHGNPMWLTDIETKVVK 49

[Close]
BLAST of CSPI07G00170 vs. ExPASy TrEMBL
Match: A0A6J1C1Y9 (late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111007717 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 9  IRLTDE-QNPVVLTDEHGNPMWLSDVETKVVQQVVQEV----------AYGDGEQPLQPH 65
          I LTDE  NPVVLTDEHGNPM L+ V TK+   +   +           +GDGEQ L PH
Sbjct: 16 IELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGPSGGHGDGEQELLPH 75

[Close]
BLAST of CSPI07G00170 vs. NCBI nr
Match: KGN43153.1 (hypothetical protein Csa_020434 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1  MYGTSVATIRLTDEQNPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD 60
          MYGTSVATIRLTDE NPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD
Sbjct: 1  MYGTSVATIRLTDEHNPVVLTDEHGNPMWLSDVETKVVQQVVQEVAYGDGEQPLQPHEKD 60

Query: 61 EDCGSSSHGRLCFG 75
          EDCGSSSH RLCFG
Sbjct: 61 EDCGSSSHVRLCFG 74

[Close]
BLAST of CSPI07G00170 vs. NCBI nr
Match: KAA0033798.1 (putative dehydrin LEA [Cucumis melo var. makuwa] >TYK22336.1 putative dehydrin LEA [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 9.2e-09
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 1  MYGTSVATIR----------LTDEQNPVVLTDEHGNPMWLSDVETKVVQ 40
          MYGTSVATIR          LTDE NPVVLTDEHGNPMWL+D+ETKVV+
Sbjct: 1  MYGTSVATIRLTDKHGNPIQLTDEHNPVVLTDEHGNPMWLTDIETKVVK 49

[Close]
BLAST of CSPI07G00170 vs. NCBI nr
Match: XP_038887695.1 (embryogenic cell protein 40-like isoform X2 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 42/86 (48.84%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 9   IRLTDEQ-NPVVLTDEHGNPMWLSDVETKV-----------------------VQQVVQE 68
           IRLTDEQ NPV+LTDEHGNPMWL+ V TKV                         Q    
Sbjct: 17  IRLTDEQGNPVLLTDEHGNPMWLTGVATKVGTTLGSLMFGGGGSRDGGHGCASDAQASSG 76

Query: 69  VAYGDGEQPLQPHEKDEDCGSSSHGR 71
             YGD EQ L PHE+DED GS+ H R
Sbjct: 77  GGYGDVEQVLPPHEEDEDGGSTVHVR 102

[Close]
BLAST of CSPI07G00170 vs. NCBI nr
Match: XP_038887694.1 (late embryogenesis abundant protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 3.9e-07
Identity = 48/111 (43.24%), Postives = 56/111 (50.45%), Query Frame = 0 

Query: 9   IRLTDEQ-NPVVLTDEHGNPMWLSDVETKV-----------------------VQQVVQE 68
           IRLTDEQ NPV+LTDEHGNPMWL+ V TKV                         Q    
Sbjct: 17  IRLTDEQGNPVLLTDEHGNPMWLTGVATKVGTTLGSLMFGGGGSRDGGHGCASDAQASSG 76

Query: 69  VAYGDGEQPLQPHEKDEDCGSSSHGRLCFGRGGRGRRKDQHRIKREIKGRK 96
             YGD EQ L PHE+DED GS+ H R     G     ++Q+  K E K +K
Sbjct: 77  GGYGDVEQVLPPHEEDEDGGSTVHVR-STSSGSSLSEEEQNERKGEKKKKK 126

The following BLAST results are available for this feature:
BLAST of CSPI07G00170 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G00170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1248.9e-3497.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004060 PE=4 SV=1[more]
A0A5A7ST544.4e-0971.43Putative dehydrin LEA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14... [more]
A0A6J1C1Y95.6e-0449.25late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CSPI07G00170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43153.11.8e-3397.30hypothetical protein Csa_020434 [Cucumis sativus][more]
KAA0033798.19.2e-0971.43putative dehydrin LEA [Cucumis melo var. makuwa] >TYK22336.1 putative dehydrin L... [more]
XP_038887695.11.3e-0748.84embryogenic cell protein 40-like isoform X2 [Benincasa hispida][more]
XP_038887694.13.9e-0743.24late embryogenesis abundant protein-like isoform X1 [Benincasa hispida][more]
BLAST of CSPI07G00170 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G00170.1CSPI07G00170.1mRNA