CSPI06G37530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G37530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	cytochrome c6, chloroplastic
Location	Chr6: 30126730 .. 30129698 (-)
RNA-Seq Expression	CSPI06G37530
Synteny	CSPI06G37530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCGCTAAATTTCCCTTTTCTTTTTTTAATTTGAAAAGTATTTAGTAAAAATTGGTCACATTATAAAACAAAATAAAAATAAAAAGGATTAAGGGAGGCAGTAGACACATCCAACAAATCACCCGCCAAATCCCAGAAGCAACGACGAGAGCACCGGCATCGCAGCCTCACAGATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCGCTTATTGCTTCCCAGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTATCTCTATGTATTTCTCCCCGCTGCAAACTGAGATTTCCAACCCAACCACAGGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAGGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCCCAGGTCCACTCATACCTAGTCCATAACTCATTATTTCTTAACCGCTCTTAACCTACGTTGTCGAACTAACCTATTACACAAATCTATTCTTATTTTTTACTCAAGCGGTATCATCATATTCTTCCAACTCACTGGATTTTCTCAAATTCTAACTACCCTCAGTCTTCGAATTTTTGTCATCTTTTTCGTCATACAGATGCATGCTCGTGAATTCTGGATAGTCGATTCGTGGATTTACAATTGGAAGCCTAAATACTGTTCTTGGTGTTCCTAAAATATGAAATGATTTCTACTCGTTCTTTTGTGTACTGTCAAAGTTATGCATACCCCATTAAGCAAAAATTACTCTACATTACTTGTTTAATTAGGATACAAATGCATGTTAATACAAATTTCCGTTCAGTAAATTTTGCATTCGCTTATTTTTCCCCCATTTTTAAGAAACGAGTTCCATAAACCTCCCTAAACAATAATGTTTCCATAATTGATTTTTTATTTCTTACCTCTGACTTCACAAGCAAAGGTTTCTATTTGATAGTTAAAAGACAGATTGAGGTATCAGAAACGCCATAAGACCGACCCTCAAATGACTCTGCTTTCTCTTTACGGGAATCAAAGATACAACTGTTTGTACTATTTCCTGACTTGATGTCGTCCGTGTAATTTGTGTAACAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGTTATTGCTACTATCTCTCCTTACACTACTCTTTTAATTTGGATAAGCATCTTAGTACTTAGTTCATGCTAATATTAGCATGCTTTTCTGACTGTTTGAATTAGAATCGTACTCTGTTTGTTTGTTTTGCACTACCAACATCAGTGTCTTCCCTGGAACCTGTTTTATTTGTTTGATTCTGAATTTTTATTGATCATTCTATGATCTTGCATATCTTCCAAATGTTGAACTTGAAGTGTGATGGTTTCGGTTTTTTCTTTTTTCCTTTTTGCTGTTCTTTCTGTGGAACATTTCTGCTACTTCTGTAACTGACTTTTTGTTTTCCTCTTTCCTAGGGTGCCACACTCTTTTCAAGTGATCTTGAAAGGTAATCTTCTAGAACTTGAGAAAACAATAAGGTTATTTATCAGTATATGATCTCAGTCCAATGTGCGTACATCACTGTCTACTAGTATCATGAGGTATTAGAACACAGATCTACTCTCTCTTCTAGATCTATGATCAATTTTTAAAAAAAATTGTTTACTTTTTTTTATTGTTCAAGTGTGGCCATAGTCATATATTGATTAGATTGTAGATTCATTGGTAAGGGTAATAGCTCTATCTATTGTTATATAGACATTTTGGTAGGGCCCAAAAATCTACATGGTCTTAACCCAAAAATGGGGTAAATCAAGCAAATGTGCTTAAGAACTGATTTTCTTTCACCTAAAACACTTCACAATCACCTAAAATTTGTTGTGCCCAAACACCGGCACTTCGCCAATTTAGAAATGTCGTTAATTTATAATGCACGCCTTTAACAATTTTATTAGGAAAAAAAAATCACCACACTTTTATGGAGAGTCCAGATCAAATAACAGAGCTTTCAGAATTTCTCTGTATCCAGCCTAGCCATATGCTGAAATATGTTTTACACGTGTTTGTGAGGTGATTGAACAAAACTGAACGTTAATGAATGATTGTTTGTTGTCTTAGTTCTAGAGTTTAAAAGCCATCTTCTATTAATTAAAGACGAAGAAAAAGCATGAGAGAACTCTATAAAATTTTCAAAATTTTGGTTAATTGTTCTTTCGTATAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATAATGGGAAAGGGAGAATGCCTGTAAGTGATAATTTGATAATCTTATTCTATAAGCGTGGAAATATTTATATAAATATATCAACACGATGGGTTTCAGGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAGACGGATATTGATTTTTGGGCCAGACCATTATTTGCCTTGTTTACCAAATACTAATGTATGCTTTGTGTATGAAATTGAAGTCTTACCAGTTAATATTTGCCAAGTTCTTATCCGAATTGATGGCCTCACATATGTAGATGGCACATCTCTAGCTAATATGACAACTGAAAAGATAGGATGGATTGTAGCTGTTATCCTTTTGATAACTAACAGCGACATTCAAACAATGTATTCATGTATCTCTTTAGAAGCGAGCAGTATCCATACTTCCCTACTGGACATGAATTGATCATAAGACAAGGGTCAACAATCAACTTAATCCCAAATGCAAATGAAGTACATGAATATACATGTATATGCCAATTTGAAGAGTAAAAACTATATTGTGAG

mRNA sequence

GCCCGCTAAATTTCCCTTTTCTTTTTTTAATTTGAAAAGTATTTAGTAAAAATTGGTCACATTATAAAACAAAATAAAAATAAAAAGGATTAAGGGAGGCAGTAGACACATCCAACAAATCACCCGCCAAATCCCAGAAGCAACGACGAGAGCACCGGCATCGCAGCCTCACAGATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCGCTTATTGCTTCCCAGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAGGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCCCAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATAATGGGAAAGGGAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAGACGGATATTGATTTTTGGGCCAGACCATTATTTGCCTTGTTTACCAAATACTAATGTATGCTTTGTGTATGAAATTGAAGTCTTACCAGTTAATATTTGCCAAGTTCTTATCCGAATTGATGGCCTCACATATGTAGATGGCACATCTCTAGCTAATATGACAACTGAAAAGATAGGATGGATTGTAGCTGTTATCCTTTTGATAACTAACAGCGACATTCAAACAATGTATTCATGTATCTCTTTAGAAGCGAGCAGTATCCATACTTCCCTACTGGACATGAATTGATCATAAGACAAGGGTCAACAATCAACTTAATCCCAAATGCAAATGAAGTACATGAATATACATGTATATGCCAATTTGAAGAGTAAAAACTATATTGTGAG

Coding sequence (CDS)

ATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCGCTTATTGCTTCCCAGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAGGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCCCAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATAATGGGAAAGGGAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Protein sequence

MKEMHLLSVTSHFVAPNTSAYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP*

Homology

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BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 40  ILKALVPPLIALLLPLSPLNKTPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGA 99
           +LK L PPL A+LL +SP+   P    L +T++I+RG  LFN++CIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPES--LGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 100 TLFSSDLERNGADAEEEIYRITYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 159
           TLF+ DLERNG D EEEIYR+TY GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 160 KIQADRGWP 169
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

[Close]

BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-11
Identity = 39/129 (30.23%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  KILKALVPPLIALLLPLSPLNKTPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPG 98
           +IL   +  L+ LL  ++P          A+  ++  GG +F+ +C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 99  ATLFSSDLERNGADAEEEIYRITYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 158
            TL  +DL++ G  + E I     NGKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 159 VKIQADRGW 168
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-11
Identity = 39/129 (30.23%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  KILKALVPPLIALLLPLSPLNKTPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPG 98
           +IL   +  L+ LL  ++P          A+  ++  GG +F+ +C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 99  ATLFSSDLERNGADAEEEIYRITYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 158
            TL  +DL++ G  + E I     NGKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 159 VKIQADRGW 168
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 72  EIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYNGKGRMPG 131
           +IE G  +F  +C  CH GG N+I P  TL    LE NG +A   I Y++T NGK  MP 
Sbjct: 2   DIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP- 61

Query: 132 FGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 168
                       FG RL + +I  +A +V  Q+++GW
Sbjct: 62  -----------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot
Match: P46445 (Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-10
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 72  EIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYNGKGRMPGF 131
           ++  G A+F  +C  CH+GG N I P  TL  +DLE NG ++   I     NG G MPGF
Sbjct: 37  DLAHGKAIFAGNCAACHNGGLNAINPSKTLKMADLEANGKNSVAAIVAQITNGNGAMPGF 96

Query: 132 GENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 168
                 +G      R+ + ++  +A +V  QA++GW
Sbjct: 97  ------KG------RISDSDMEDVAAYVLDQAEKGW 120

[Close]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 150/169 (88.76%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSVTS FV P +S + FP  G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGCLVLAET EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 152/170 (89.41%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MKEMHLLSVTSHFVAPNTSAYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60
           MKEMHLLS                GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK
Sbjct: 1   MKEMHLLS----------------GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60

Query: 61  TPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120
           T GCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
Sbjct: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120

Query: 121 TYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TY+GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + S +CFP K  RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 133/169 (78.70%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSV S F   + S +CF  K  RRT VC++R QVK LKAL PPLIA+L+ L PLNKT
Sbjct: 1   MRLLSVISDF---SLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGC  LA++ EIERGGALF+ +CIGCHDGGGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 130/170 (76.47%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCF--PGKRRTPVCQIR-TQVKILKALVPPLIALLLPLSPLNK 63
           MHLLS  S F   + +++CF   G+R T VCQ R  Q+KI K+  PPLIA+L+ LSP+ K
Sbjct: 1   MHLLSAISDF---SIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITK 60

Query: 64  TPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 123
           TPGC  LA+T+EIERGGALF+QSCIGCHDGGGNIIQPGATLFSSDLERNGAD EEEIY I
Sbjct: 61  TPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHI 120

Query: 124 TYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TY GKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Sbjct: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP 165

[Close]

BLAST of CSPI06G37530 vs. NCBI nr
Match: XP_004134523.1 (cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protein Csa_003678 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MKEMHLLSVTSHFVAPNTSAYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60
           MKEMHLLSVTSHFVAPNTS YCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK
Sbjct: 1   MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60

Query: 61  TPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120
           T GCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
Sbjct: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120

Query: 121 TYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TY+GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of CSPI06G37530 vs. NCBI nr
Match: XP_008439440.1 (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 150/169 (88.76%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSVTS FV P +S + FP  G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGCLVLAET EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of CSPI06G37530 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 142/169 (84.02%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           MHLLS TS+F     + +CFP   KRRT VCQIRTQVKIL +L PPLIA+ L LSPLN+T
Sbjct: 1   MHLLSATSNFC---PTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGCL LA+T EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP 166

[Close]

BLAST of CSPI06G37530 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + S +CFP K  RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CSPI06G37530 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 133/169 (78.70%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSAYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + S +CFP K  RRT VCQ+R QV ILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKT 60

Query: 64  PGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
           PGC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CSPI06G37530 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 197.6 bits (501), Expect = 8.2e-51
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 0


Query: 40  ILKALVPPLIALLLPLSPLNKTPGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGA 99
           +LK L PPL A+LL +SP+   P    L +T++I+RG  LFN++CIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPES--LGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 100 TLFSSDLERNGADAEEEIYRITYNGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 159
           TLF+ DLERNG D EEEIYR+TY GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 160 KIQADRGWP 169
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

The following BLAST results are available for this feature:

BLAST of CSPI06G37530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	1.2e-49	70.54	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	2.8e-11	30.23	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	2.8e-11	30.23	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00110	4.7e-11	38.14	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]
P46445	5.2e-10	35.42	Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ...	[more]

BLAST of CSPI06G37530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYD3	6.5e-80	88.76	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A0A0KPD1	6.5e-80	89.41	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]
A0A6J1EG38	1.6e-70	79.29	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	1.4e-69	78.70	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A6J1CXZ2	4.1e-66	76.47	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]

BLAST of CSPI06G37530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134523.1	1.1e-92	98.24	cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protei...	[more]
XP_008439440.1	1.3e-79	88.76	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED...	[more]
XP_038877732.1	2.0e-75	84.02	cytochrome c6, chloroplastic [Benincasa hispida]	[more]
XP_022926876.1	3.3e-70	79.29	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_023517564.1	1.6e-69	78.70	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G37530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	8.2e-51	70.54	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 69..103 e-value: 3.5E-7 score: 32.3
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 65..109
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 28..97
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 71..120 score: 7.796813

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G37530.1	CSPI06G37530.1	mRNA
CSPI06G37530.2	CSPI06G37530.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding