CSPI06G37430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G37430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 30044968 .. 30045174 (-)
RNA-Seq Expression	CSPI06G37430
Synteny	CSPI06G37430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGCAGAAGAAGATGTGGGATGA

mRNA sequence

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGCAGAAGAAGATGTGGGATGA

Coding sequence (CDS)

ATGGCTGCAAAATCACCTTTTGTTCATGCACCGGCCCTTTATCTTTCATCGCCATTCTTCCAATTCAAATGTTGTTTTGGTTTTGTGGGCAGCCTGGTTGGTGATATTAAAATCAAACAAGAAGCCAAAGAAGAAGACAAGAAGCGGAAGAAGCATGATCCTAAAAGTAGTGAAGAAGCAGAAGAAGCAGAAGAAGATGTGGGATGA

Protein sequence

MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSSEEAEEAEEDVG*

Homology

[Close]

BLAST of CSPI06G37430 vs. ExPASy TrEMBL
Match: A0A0A0KL28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526530 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-25
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSSEEA 60
          MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSS   
Sbjct: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSS--- 60

Query: 61 EEAEEDVG 69
          EEAEEDVG
Sbjct: 61 EEAEEDVG 65

[Close]

BLAST of CSPI06G37430 vs. NCBI nr
Match: KGN49519.1 (hypothetical protein Csa_003703 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 8.5e-25
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSSEEA 60
          MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSS   
Sbjct: 1  MAAKSPFVHAPALYLSSPFFQFKCCFGFVGSLVGDIKIKQEAKEEDKKRKKHDPKSS--- 60

Query: 61 EEAEEDVG 69
          EEAEEDVG
Sbjct: 61 EEAEEDVG 65

The following BLAST results are available for this feature:

BLAST of CSPI06G37430 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G37430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL28	4.1e-25	95.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526530 PE=4 SV=1	[more]

BLAST of CSPI06G37430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49519.1	8.5e-25	95.59	hypothetical protein Csa_003703 [Cucumis sativus]	[more]

BLAST of CSPI06G37430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G37430.1	CSPI06G37430.1	mRNA