CSPI06G37320 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G37320
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RRM domain-containing protein
Location	Chr6: 29962598 .. 29965810 (-)
RNA-Seq Expression	CSPI06G37320
Synteny	CSPI06G37320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTTTGAGATAGTTGTATAATTTAATCTATTAAGATTAAAAATGTATATTTTTAAAATTTAGGAACCAAAAGCAGAAGTAGTTTTCCTAAAATTAAAACTGTTCGGTGTTATGAAAATAAGAAGCCGCGAATTCGGGTTTTGAGGTGCGATCGATCGATCGAACGAACGAAGCTCCAGGGCGTTGACTGAGCAGATTTGAGCGCCAATATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTTCAAATATTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAGTAAATTCACTTCCCTCTTCCTTTCGTTTCATGTGATTTTCTTGATTTCCCATTTCGAATTTCCCCCCAATTTGTCGTATTTGCTGTTATTTCAGTTTTTCTGTTTCTCCTCTTAGGGTTTTCCTGTTCCTTTCCTTTTATTTTAGCTTTTTTGGTTGCTATCTTGATTCTTCTTGATTTTGCCCTATTGTTGTTATTTATGCTATTTTTGTGGTTTTGGTTTATTTTTCAAGGCTTTCTTCTGCTGAAAGTTTACGCCGTTGTCTCAGTTTGGTTTGTTTATTATTAGCAATGATGAAATTTGTACGGAAGCATAGAAGGCACCATGAAAGTTCTGCAGCGTTCGTTGTAAACAACCTAGAAAGTTAGATATTCATTGCCATTGAATTGAAAATTTCCCAAGTTTGTTAAGTATTGTTTATGGAGTTGTAAGAAAGAAATTGACCCTACACGTAAAAAGGTGGGGGTGATAAATTATCCCCCTCCCCAAGAAAGGGAAAACTCCAAGAAAGTTCTTGAATCTAAATTAATGAACCAATCAGTAAGTGAAATTGTTTATGAAACTGTAAACTACCTAGCAGTGAGAGAAGCCCAGGACTTCGACCATGCGCCTGTTTAAAAGAAATATGAACTGTATATAAATTGGGGACAATGTTAAAACAAAACCTGGTGACAATGTTAAAATAAAATCTTTTGTTGAATTGATTTAGATTGAAACTTTTCTTACATTTTCTGTGTGTAGGTGACTAGAGATACAGACTTGATTATCTTGCTAATGGAAATTTTAATGCCTTTAGATTCTTAGCATATTTTATGGCTTATTTGGCTCACTGAACTTTTAGTTAAATGGATTTAGAAGCTAGAAGGATAGTTTTTTTTTAAAAAAAATTTATTATACTTTCCATTAAGGTGACACATATCAATTTGGTCCAATTTGATTCCTGAAAATGGGATTAGGAAGTAAAAGCATAATAATGTTGACACCTTAGATGTCCACTAACATAATGATAATGATGCTTAATGCAAGTGATGTGGAGTGGATAATAAAGCATTTATGGAGTACGGGAACTCATGTATTGATAATTATGTGAGTTTCGACACAGCTCTTTTTCTCCTTACTTTTAAGAATACGGACATAAAGGATTAATAATTTATTTGAAGTGAAAAAAAAAAAAAAAAAGTTAAGGTGAACTGTGGCTCTTGGTGTATATCTATGAAAATTATCCAGACCTTCCCATTAGCCTTTTTTTGGAGTTTCCAGTCAACTTCCTTTCCTCATTTTTTGTTGTTATGTGTTTTCCTGCAATATGAATGACTTTCACCCTGACCCAACTATCCAACCCAACCATCGTCACATTTGGAGTGTACTTATCCATATTGAGGTTTTCATGGAAAACTATTGGTGACGTTCTTCACTTATTTTAATTGATTCAGGACAGGTGAGAAGAGAAGAAACAAAGTAGCATTGCCCTGTTTTCTATCTGTTAGCTATTTTTATTTTCATCTTTTCCTGTTTTCATTACACTGATAATTTATTTAGAGTGCAGAGTTCTGTTTAAGCATGGTGTAACTTAATATTAGTCAAAGTAAAAAGTCAACAGAAAACAAATACAATAGCAAAAGAACCTTTGCAAACTGTCTTCTGAAGTAAACTAATTGAAAATATTTTTATTACTTTTGGAAAGCAGATTTTCAATAATTTGTGAGAGAAGTTTAAGAGGTCATTGTTCACTTGTAATTCATATGCCTTCCGAATGCCACTTTTTCTTCATGAATTTTCTTCTGCTATATTCTTGTTCTCGCTTTTTTTTTTTTTTTTTTTTTTGATGTCTTGTGAAGTTGTCTAGATTTTAAGAAGCCTTGTATAGGAGGTTATTGCAATATCAAATCGATGGAATACTTTTTCTTGAGCACCTTTGAATGCTCAAACTCTGCTTCCATTAATTAAAAAACTATATGCAGATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGGTAATTGCATTTTTTGTTGGCTAATCTCCAACCAAGTCCAATAAGCCTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCATTTATTCAATACACGTGCCAAGACGATGCGATGCTCGCTCTGGAAACTATGGATTGCAAGGTTAAAAACTTCACCTAGCTTTGTCTTTTGTAGATAAGGTAAATCATGCTTGAAAGTTAATGTTGTTTCTTCTGGGAGACAGATATTTGATGGAAGGATGATCTATGTTGAAATTGCAACACCTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAAAGAGCGGCCTAATGAGCGGGCTAACGTGGATCAAGAAGATGTGGCAGATTGTTGGTATTGATCTTCCTTTTTCTGAGAAGCAAAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAAGGAGATTTAGATCAATTTCAAAGAATCAATGAGTGCTGAAGTGTTTGCTGAGATGGATTCATTACATCTATCTTCGAAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAACTCTTCTCTTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTGACTGCATCTCCCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGCGAATGCGGAAATTCGTAATTACCTTTACAAGTCCTTTTTTTTAAAGAAAAATTCCTTATCCAATAATCAGTTTCCAAATTTAAAGTGCC

mRNA sequence

GAAATTTTGAGATAGTTGTATAATTTAATCTATTAAGATTAAAAATGTATATTTTTAAAATTTAGGAACCAAAAGCAGAAGTAGTTTTCCTAAAATTAAAACTGTTCGGTGTTATGAAAATAAGAAGCCGCGAATTCGGGTTTTGAGGTGCGATCGATCGATCGAACGAACGAAGCTCCAGGGCGTTGACTGAGCAGATTTGAGCGCCAATATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTTCAAATATTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCATTTATTCAATACACGTGCCAAGACGATGCGATGCTCGCTCTGGAAACTATGGATTGCAAGATATTTGATGGAAGGATGATCTATGTTGAAATTGCAACACCTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAAAGAGCGGCCTAATGAGCGGGCTAACGTGGATCAAGAAGATGTGGCAGATTGTTGGTATTGATCTTCCTTTTTCTGAGAAGCAAAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAAGGAGATTTAGATCAATTTCAAAGAATCAATGAGTGCTGAAGTGTTTGCTGAGATGGATTCATTACATCTATCTTCGAAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAACTCTTCTCTTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTGACTGCATCTCCCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGCGAATGCGGAAATTCGTAATTACCTTTACAAGTCCTTTTTTTTAAAGAAAAATTCCTTATCCAATAATCAGTTTCCAAATTTAAAGTGCC

Coding sequence (CDS)

ATGTGGGCGACCACCGTCTCCTTCCCTTCAGTTTCAAATATTCGGGGACCCATTTTTCCGAATAATCGACTTGTCGCTTCCAATCGCATATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTCTCGAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGTTACGCATTTATTCAATACACGTGCCAAGACGATGCGATGCTCGCTCTGGAAACTATGGATTGCAAGATATTTGATGGAAGGATGATCTATGTTGAAATTGCAACACCTGGTAGTGGTTCCTTTGGAGGATATCCAAGAGCCTCTGGACCCCCAAAAGAGCGGCCTAATGAGCGGGCTAACGTGGATCAAGAAGATGTGGCAGATTGTTGGTATTGA

Protein sequence

MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY*

Homology

[Close]

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LETMDCKIFDGRMIYVEIATPGS----GSFGG 131
           ++ MD K  +GR I V +AT  S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot
Match: Q54PB2 (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419

Query: 104 ETMDCKIFDGRMIYV 119
             MD K+F GR+I+V
Sbjct: 420 NDMDGKVFQGRLIHV 434

[Close]

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALET 105
           +L +  L + TNE  L++ FS +G+I+EV++ KDR TKR +G+ F+ +   DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 106 MDCKIFDGRMIYVEIATPGSGS-FGGY 132
           M+ K  DGR I V+ A   SG   GGY
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRRGGY 92

[Close]

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALET 105
           +L V  L ++T+E  L++ FS+FG I+EV++ KDR T+R +G+ FI +T  + A  A+  
Sbjct: 7   KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query: 106 MDCKIFDGRMIYVEIATPGS-----GSFGGYPRASGPPK 140
           M+ +  DGR I V+ A   +     G+FG Y R  G P+
Sbjct: 67  MNGESLDGRQIRVDHAGKSARGSRGGAFGSYERGRGYPR 105

[Close]

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot
Match: Q4WJT7 (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           L+SRL VRNLPY  +ES L+  FS FG+I E+ +A D  +   KG+A++QY   D A+ A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 103 LETMDCKIFDGRMIYVEIAT 123
            + +D K F GR++++  AT
Sbjct: 359 YKELDGKHFQGRLMHILPAT 378

[Close]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 5.6e-86
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSFPSVSN+RGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.1e-76
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SN+RGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERP----NVEQEDIADCWY 154

[Close]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 128/158 (81.01%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSFGGYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPK--LVPEEVADCWY 156

[Close]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.7e-63
Identity = 126/158 (79.75%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SN+RGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADCWY 156

[Close]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59
Identity = 118/158 (74.68%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA+TVSFP + N R PI  +N    + R SLNLRASFFDYPLASR+MVRNLPYST+E R
Sbjct: 1   MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAMLALE MD K FDGR IYVE+
Sbjct: 61  LQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEV 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGS SFGGYPR SGPPKERP     ++ E+VADCWY
Sbjct: 121 ARPGSDSFGGYPRTSGPPKERP----KLELEEVADCWY 154

[Close]

BLAST of CSPI06G37320 vs. NCBI nr
Match: XP_004134540.1 (glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 hypothetical protein Csa_003456 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSFPSVSN+RGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of CSPI06G37320 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 6.4e-76
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SN+RGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERP----NVEQEDIADCWY 154

[Close]

BLAST of CSPI06G37320 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 128/158 (81.01%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSFGGYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPK--LVPEEVADCWY 156

[Close]

BLAST of CSPI06G37320 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-63
Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SN+RGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADCWY 156

[Close]

BLAST of CSPI06G37320 vs. NCBI nr
Match: XP_038883016.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 127/178 (71.35%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVR---------- 60
           MWA TVSFPS+SN+RGPI PNNR   S R SLN RASF DYPLASRL+VR          
Sbjct: 1   MWAATVSFPSISNLRGPILPNNRTDGSKRPSLNFRASFSDYPLASRLLVRTSLNFEGSNL 60

Query: 61  ----------NLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM 120
                     +LPYST ESRLQEEFSNFGEIAEVLLAKD+ TKRPKGYAFIQYTCQDDAM
Sbjct: 61  NSMRVVLRREDLPYSTKESRLQEEFSNFGEIAEVLLAKDQLTKRPKGYAFIQYTCQDDAM 120

Query: 121 LALETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 159
           LALE MDCK FDGRMIYVE+A PGS SFGGYPR SGPPKERP     V+ ++VADCWY
Sbjct: 121 LALENMDCKKFDGRMIYVELAKPGSSSFGGYPRTSGPPKERP----KVELQEVADCWY 174

[Close]

BLAST of CSPI06G37320 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 171.4 bits (433), Expect = 5.8e-43
Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 1   MWATTVSFPSVSNIRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MW+ T+SFPS       + PN R +   +I    +AS F+YPLAS++MVRNLP+ST+E  
Sbjct: 1   MWSATLSFPSFVASSSSL-PNYRNLRFPKI----KASLFNYPLASKIMVRNLPFSTSEDF 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120
           L+ EFS FGEIAEV L KD + KR KGYAFIQ+T QDDA LA+ETMD ++++GRMIY++I
Sbjct: 61  LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 120

Query: 121 ATPGSGSFGGYPRASGPPK--ERPNERANVDQEDVADCWY 159
           A PG   F G PR SGPP+  + P E AN   ++VADCWY
Sbjct: 121 AKPGKRDFQGLPRTSGPPEKSDEPEEAAN---DEVADCWY 152

[Close]

BLAST of CSPI06G37320 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 103 LETMDCKIFDGRMIYVEIA 122
           L+++D KI DGR+I+VE+A
Sbjct: 65  LKSLDGKIVDGRLIFVEVA 83

[Close]

BLAST of CSPI06G37320 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LETMDCKIFDGRMIYVEIATPGS----GSFGG 131
           ++ MD K  +GR I V +AT  S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of CSPI06G37320 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LETMDCKIFDGRMIYVEIATPGS----GSFGG 131
           ++ MD K  +GR I V +AT  S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of CSPI06G37320 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           A RL V  LPYST E  L E FS FG+I+EV L  D+ T+  +G AF+ Y   + A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285

Query: 104 ETMDCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNER 146
           + +D   F GR +++  A P + S      +S  PK    ER
Sbjct: 286 DKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKER 327

The following BLAST results are available for this feature:

BLAST of CSPI06G37320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	8.0e-13	39.13	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q54PB2	1.4e-12	46.67	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=...	[more]
Q9DED4	2.3e-12	42.53	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
W8E7I1	2.3e-12	38.38	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
Q4WJT7	3.0e-12	45.00	Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain...	[more]

BLAST of CSPI06G37320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL21	5.6e-86	99.37	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV...	[more]
A0A1S3AYG0	3.1e-76	89.87	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1IJY1	2.1e-64	81.01	small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EGU7	6.7e-63	79.75	small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CXC0	2.0e-59	74.68	glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673...	[more]

BLAST of CSPI06G37320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134540.1	1.2e-85	99.37	glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 ...	[more]
XP_008439484.1	6.4e-76	89.87	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_022977992.1	4.3e-64	81.01	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_023543104.1	3.6e-63	80.38	small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038883016.1	1.1e-62	71.35	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h...	[more]

BLAST of CSPI06G37320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20030.1	5.8e-43	55.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	2.6e-14	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	5.7e-14	39.13	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	5.7e-14	39.13	glycine-rich RNA-binding protein 4	[more]
AT5G08695.1	5.7e-14	39.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 e-value: 7.4E-24 score: 95.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..116 e-value: 3.6E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..123 score: 18.035118
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 40..152 e-value: 3.2E-26 score: 94.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..158
None	No IPR available	PANTHER	PTHR13952:SF19	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1	coord: 23..152
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 23..152
None	No IPR available	CDD	cd12316	RRM3_RBM19_RRM2_MRD1	coord: 46..118 e-value: 4.18672E-26 score: 92.3604
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G37320.1	CSPI06G37320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding