CSPI06G37190 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G37190
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LSD1
Location	Chr6: 29875847 .. 29882267 (-)
RNA-Seq Expression	CSPI06G37190
Synteny	CSPI06G37190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCTCCGAAATTCCTCAATTCCTCAATTCTTTCTTTCTTTCTAAATTTCTATTTTGATTTTTCTTAAAAAGGAAAAAGGGAAAAAGGAAAAAAAAGAAAAGAAAAGAAGAGAAAATATTCTTCTTCATTTCTTCAATCTTACCGTCTTCTTTTTCTATCCCATTGTCTGGCATTTCAATTTCCAACCGCAGTTCTCGCTTCCTTCCCCATCCGCTTAAGCCGGCCTCCTCCATAGCTAATACCTTCTTCGCCTCTTCCATCGTCTTCTTCATAACCAACCCTTTCTTCCTTCTCTCCTCCATCATTTTCAGGTAATTTTTTTAAAAAAATCTCCCTTTCTCTCCCTCTGCGTAATTGTAATTTCTGTATCTTCAAGCACTATCTTCTCTACTTTTGTGATTTCTATCCTTTAATGAGATTGGTGGTGATTTGGACATTTGGGTTTTTTTTTTTTTTTTTTTTAATGATTTGACAGATTTCCTTTTCGGGGCTTCTAAGTGATCGTTTCTTTAGAAAATCGGTGGTCGCGAGGAGGATCGGGAGAAGGTGATTGTTTTTTCATTTGGATTTGGAAAATGAATATCGTTTGTTTGTTTGTTTGTTTTGTTTGCTTTTACAGACTTGGGCTTTTAGATTTTATGCTGCCCTAATAATTTTCATTGGGTGGACCAATAATTCTTTTTAACTTGAGATGTCTTTTGCTGGGGAATGCATTCTTTTATAGTGCTTACTGCTTATTTCCCTCTTACATGCTGTCCTTCAACGTTGCAACGTTATATATATATATATATATATATATATATATTTGCACGCAACAATGAAGCGGTTTCCATGGACTTTCCCCGACAAGAGATTTAATTATTGATCTCACAAGCTGTACAAATATGGCTGAGGACAAGAAGATCTTCTTAATCCACACGGTTATGTGGATCATATTCTTGAATTAGCTATTGTTGATAGAGGGAATGAATAATGAAACCTATCCGGTGGATTATGGTTTTTTTTTAGGGAACAGAATAATCAAGTGTTTAGAGGGCTGAAAATGAGTCTTGTGATGTTTGGTCCCTTGTTAGTTGGGAGATATAATTCTTTTGTTTGGACTTCGATTTTTAAGAATTTTTGTAATTAGTCTATAGTTGTAGTTGGAGCCCTTTCTTTAGCGTGTTCCCTTCTTTTGTATGAAAGATATTTTTTAAAGCCTGTTTTCTTTCATTTATTCTAAATAACATACTAATAATAAACAATTGAAACCTTGCTGGTAGAAGGAACCAAAGACATACTCTGGTGATCTTAATTGTCCCCAAGGGTCTTCAATATCAATTATTGTTCTAAAAAATTATTTGTGCGGTTGATCTACTTTTATTCCTGTAATTCCTCAACTTCAGTCAGTTACATTTATTTTCAGGCTTCAGCTTTAGAATCTAATTTCTATTTAACTACATCAGATATTTATAGCAGACGAGGGGAGTGTTTTTTCTAATGATTTTGTATCCTTGCGAATCATCAGTGGACTTATGTGAATTATTGTTTAATATTGAATCTTGTTGAAGAGAAGTTTAAGCTTCTGAAATTATTGTGCATAGAGGGTAGTTTCGTATTCGTTTATTTTTTTTCAATCTTGCACCTAGCTTATGATGCTGCTCTTCATTAGCAAGTTCACTCATGACAAGCTCTTGATTTTTTCTCTCCACTTGCTGTAGCAGCTATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCAGGGGGGGCAACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGTATACAATTTTTCATATTAATTCTTCTCCCCTTTATGGTTGTTATAAGTGTTGAAGAAATTATGATAAAATAATGCAATGTGCTAAGTAAACTATAATCACTATCTACTTGATAAACTATTTAATTTAGGCTAGTTGGATGATGGCCAAGTACATGACTTCTCCTAACCTAAATATGGCATGTAGGCAAAAATATATAAAATTGTAGACGTTTTAAATGGCACGAAAAGCTGACTACAATAAAGGGTGTGGATATTTACACCAATAAAGAACATGGAATAAAATAAAGTTTAGAAAAGATTCAAATCATAAGAATGCATCCCTGAAAATTCTTCCATTCCATTGACTCCTAAGATTCCAGAAGATAACCCTATTGATAGCAAGCCATAAATTTTTTTGATAATCATAGAAACAGAAGGCCTCACCCCCTCCCAAAAAAAATGAAGAAGGAAACAAAAAGAGGTAAGGATATGATATCATAAATCTTGCTGAGCATAGCCATAGACCAACTAAAAGTGTCAAACATAAAGAGACAGTAACGCTGCACAAAAGGAAAATTTGCCAACAAATGATAAGGATGCTGGACTTGAGTACTTGTAAAGCGTTAAGGCCTCTTGTCGTAGGTGAGCGTCTGGCTGTGGGTGTGCCTCAACAACATTGGGACAAACAAAAAATGCTTTAGAACGGTCTTGTGGCCAAACACCACAAATCTTTAGCATTCTGTAGAACAGCCATAGAAAGAAGATGGGAAAAACTAGCTCATTCAACCATTTCAGGTGTTGGTGAGGTTCCTTCAAAATATCTAAATCTCATGTACCACGATAAAAAAGGTCATCTACACAAAAGAAGTCCGAATGTTAGGTATCTCAACTGAAATAGGGTTTTTCCCCCTTTTTGCTTTAATTGGACACAAAACTTAACTTGATGAAGGATGCATGGGTAAAAAGGGCATAGGCATACACTACCAAAATCATCATTTACAAGAGCATAAATGTTGTTCACTATTGCATGGGTCAAAATGTTGTTCACTGATCACCTTTAAGGCAACAAAAGGGCTCTTATGGGATTACATTAACAGAGTCATTTTTTGGAAGATTTGGAATGAGAGGTATTCTGGGATTTTTCAGTGGAAAAGAAAGATTTCCTGGGGGTTTTCTTGAATAATCTGTTTTTAATGGCCTTTTTGGTGTAAAAATTTGCCGCTTCTCAATAGTTACAATTTAAATTTCTTGTTTTTAATTGAAGGGATCTTTTGTAATCCCTTATTAGGCTCATTTTTACTCTTTGGAGACTTCATTCATCAGTGAAATAGTTTTTATCAGAAAAAAAAAAAAAAAAAACCCCATAAGAAAAACACATTTTTAAGATTTAGCCCAAGTCCTCCAACAATTTGGTCTTTCATGGATTACTGCGATATGCAAAGCAAAAGGAAGTCAAGGATATGAATGCAACTTGTCTAGTTCTAGTAGGACACGGACACGTCAGGAACATGTGCATTTTTTATTTTTAGAATTAGTATATATGGTATGTATCTATATATTAATACTTCCTTATACGTAGCCCATGTAAATTTAACCTAAAAGCAATATATACCCCACCTAAAACAAGTAGTCAATTAGGGAAAATTATTTTTAATGACGACTCTAAAGATATTTACAAATATAACAAAATATCATCGTAATAGACCAAGATAGACTACCATTTGTGTCTAGCCTTGGTTTATTGTGGTCTGTCATAGATAGATTGTGATATTTTGCTATATGTTGTAAATATTTTGATTCATTTTGCAATAATTGAAAATAGCCCGTTAATTAGTGATATTTTGAAACTTAGAAGATATAGAAGGATTTGGTTGGCTATGATTAGAGGTAGAAGATGCCATCTTAATATAAGGAATGATCAATATGTCAGGTCTAGAACCCCTGTTCTTTTTCATAATTTTTAGATAATTTTTTCAAGTCAGCCTGATTTAGGAGAAAAAAATATCTGGCAGACGAATTTTAGTATGTTGGACACATGTCCAGTGCGTGTCCTTGCCTTCAAGGTCACAATAGTGTTCTCCTTCAATAATGGAACATGCTCATGTGAAGATGTTCCAAGTGGAAAATTATTATGTTGAAATGTGTTGAGTAAGATGTTAGACTTATTCATAATGAATATTATTTTATTAGTTTCTAATTTTATTTTGTATTTCTTATAGAATAACCATAAAGTTCTGATAGTAGAGTTGTTGAATTGACTCTTGTCCTGTAACATATAAGTCTGAGCAATTGCTTTTGTCCTTCATACCACTATTTGTCATTTGGCTTCTCTTCTGAAGTCTTATATCAGAGACTTGGGCCTTGCATTTGCAGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACGTTGCTTATGTACGCACGTGGGGCAACAAGTGTAAGATGCTCATGTTGCCATACAGTGAACCTTGCACCTGGTATGAAGAAAACTACCATTGATTTGAGTTTCGGGAAGAATATGTGGATATTTGAAACTGACAGAGATACTTATACTTGTTTAAGCTTTTATTTATTTAATGAACTGGGGATAAGGATAACAGTATGACTTGCACATTGATAATCGATTTTTCCCATTATAATCTTGTTTCTCTTTCATATCTCATATTTCTCTCTTTTCTTCCTTTGCCCTTCTTGTTTATTGTATGCTTCTGGTAGAAAAGAAAAATCACAATATCTTTGATAGTAGGCTTTTGCTTTGCTTGAGAACAAAAATGAACGTGTTGTTACCTGTCTCTCTTAACACTGCTGTTTTGTTGCATTTTCTTAAAAATAAAAATATATCAATAAAGGATTCGTTTTACGTCTTTTTATCATTATTATGGTTACAACCTAGAGGATTTCTTTTTAGTTCCTTCTGTGGGATAATCTTTGCTTGGGAAATGAAATTTTGGCTTTTCTCAAGTTGGATGTGAGATCTTATTTCTGGCAATTCTAGTCTTGTTTATGCTGGCATTTGTATTATGCTATTAATTATTAGACACTCAAATTTTCTGATGTTATATTAGTTAGCTATCTCACTGACTTTCATGTTTGGGTGCTTGCGACTGTTAAAAAAGCTACGAACCAGGTTGCTCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCTTATGGAGCTCCATCTGTCAAATGTGCGATCTGTCACTATGTTACAAATGTTGGTGTGAGTATAATCCATTTCTTTTCAAAGTGCCTAAAATTTCTTGATTTTTTTAGTTTGTTGAGTTGTGAATGTGGTGGGTTGGAAGTTCCGTGCCTCCTCCATTTGTAGATATTCTTTATTTCGACTTTGGAAACCAACTTAGCCTATTTTGGATGTGATTTCAGTTGAACTTGTGTAGCGTAAGAGGGTACAACTAAATTTTGAGGTCAAAATTAAGTTGTTAAATTTTACTTGGTTACATTCCGAAATAATGATGCTGTTCTACATGTCAATAGGGAATATTAAGAAAGAACTGAAAGTTTGAAGTCACAAACTTGTATCCAATCCAAGACATTTAATCTATAAACTTCCCATGAACCTGACATTGTGCAACTTGGATCTGTTAAATGCTTCTGATTACGTATTCTCTTGTTAATGCACAATAAGTGCTAATATTTTCTACCAGGTCTTCATGTTTTCTCCATTGTATCATTGCAGATATCCAACGTGAGGGTTCCCATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCCCCTTCATCATCAGTACGTTCTCAAGCTTTTCATTTCTTTAGTCTCCTTCCTGACAGGCCTCTGCATTGACTATTTAGTGGATTAATAATTTTGATTGTGCGGCATAGTTGAAATAGGATGGCTCACTAATTTCATTTCCTGCAGTCTCAGAGCCAAACAGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTAAGGAATTCATGCTCTTCTCATTTTCATTTCCTGCATTCTTTTCACTCTACCCTCTTCAGAATCCTGTTCTCTGATTTATTACCAGTAAAATGTGAAGACTACTAATACTCTGAATGGCAGGTGAGCAATGTCGTTGTTGGTGTCACAACAGATAAAAGGTAACTTGGTGAGATCATGGTTGATTGATGACACTTACTATTAGCGGCTTAAAAGGATGGGAGGAAGCGATCTATATATCTCTCTAGTACATCACTATACTGCTTGGAATATGATTATGGTTGTGGAAATTTCTGTATAGTTTGTCTCCGGATTTTTCCTTAAAGGTCACCATTCATTGTTGAGTCAACTTCAATTTGAGGTTCAGATAACTTTTTACCCTGTGAATGCGATGTATATTATGGACCTGAAGAATTTGAGGGTCTGTACTGTATTACTTGTGTGATTTCTGTACCGAATCATTGAGCTGTCTCGCAAGTAAAAATATTATACATCCATCGTATCTCCTCTGGTAAATATGAGTATAAACGTTGTCTTGTATTGTCTGTTTCCATAATTGTTGGTGGTATGTATTTGGAATTTCCATTGGTTTTGTTCATATACTTTTGCCAATAAATTTAGTACATTTTTCTCCCATA

mRNA sequence

AAATCTCCGAAATTCCTCAATTCCTCAATTCTTTCTTTCTTTCTAAATTTCTATTTTGATTTTTCTTAAAAAGGAAAAAGGGAAAAAGGAAAAAAAAGAAAAGAAAAGAAGAGAAAATATTCTTCTTCATTTCTTCAATCTTACCGTCTTCTTTTTCTATCCCATTGTCTGGCATTTCAATTTCCAACCGCAGTTCTCGCTTCCTTCCCCATCCGCTTAAGCCGGCCTCCTCCATAGCTAATACCTTCTTCGCCTCTTCCATCGTCTTCTTCATAACCAACCCTTTCTTCCTTCTCTCCTCCATCATTTTCAGATTTCCTTTTCGGGGCTTCTAAGTGATCGTTTCTTTAGAAAATCGGTGGTCGCGAGGAGGATCGGGAGAAGCTATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCAGGGGGGGCAACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACGTTGCTTATGTACGCACGTGGGGCAACAAGTGTAAGATGCTCATGTTGCCATACAGTGAACCTTGCACCTGCTACGAACCAGGTTGCTCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCTTATGGAGCTCCATCTGTCAAATGTGCGATCTGTCACTATGTTACAAATGTTGGTATATCCAACGTGAGGGTTCCCATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCCCCTTCATCATCATCTCAGAGCCAAACAGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTTGTTGGTGTCACAACAGATAAAAGGTAACTTGGTGAGATCATGGTTGATTGATGACACTTACTATTAGCGGCTTAAAAGGATGGGAGGAAGCGATCTATATATCTCTCTAGTACATCACTATACTGCTTGGAATATGATTATGGTTGTGGAAATTTCTGTATAGTTTGTCTCCGGATTTTTCCTTAAAGGTCACCATTCATTGTTGAGTCAACTTCAATTTGAGGTTCAGATAACTTTTTACCCTGTGAATGCGATGTATATTATGGACCTGAAGAATTTGAGGGTCTGTACTGTATTACTTGTGTGATTTCTGTACCGAATCATTGAGCTGTCTCGCAAGTAAAAATATTATACATCCATCGTATCTCCTCTGGTAAATATGAGTATAAACGTTGTCTTGTATTGTCTGTTTCCATAATTGTTGGTGGTATGTATTTGGAATTTCCATTGGTTTTGTTCATATACTTTTGCCAATAAATTTAGTACATTTTTCTCCCATA

Coding sequence (CDS)

ATGCAGAGTCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCAGGGGGGGCAACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTGGAGGTTGCAGGACGTTGCTTATGTACGCACGTGGGGCAACAAGTGTAAGATGCTCATGTTGCCATACAGTGAACCTTGCACCTGCTACGAACCAGGTTGCTCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCTTATGGAGCTCCATCTGTCAAATGTGCGATCTGTCACTATGTTACAAATGTTGGTATATCCAACGTGAGGGTTCCCATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCCCCTTCATCATCATCTCAGAGCCAAACAGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTTGTTGGTGTCACAACAGATAAAAGGTAA

Protein sequence

MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR*

Homology

[Close]

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.3e-63
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

[Close]

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-57
Identity = 116/187 (62.03%), Postives = 135/187 (72.19%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG--TDMAQLICGGCRTLLMYARG 60
           MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LICGGCRTLLMY R 
Sbjct: 1   MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60

Query: 61  ATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVR- 120
           A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAPSVKCAICHY+TN G++ V  
Sbjct: 61  ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120

Query: 121 VPIPVHRRNGTISSGMPPSSSS--------------QSQTVVVENPMSVDESGKLVSNVV 171
            P P+   +G+ S   PPS SS              Q+ TVVVENPM+VDE GKLVSNVV
Sbjct: 121 TPSPMPTSSGS-SYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVV 180

[Close]

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-55
Identity = 107/169 (63.31%), Postives = 133/169 (78.70%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTS-VPPPGTDMAQLICGGCRTLLMYARGA 60
           MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LICGGCRTLLMY R A
Sbjct: 1   MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60

Query: 61  TSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVP 120
           TSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPSVKCAIC+++TN G++ +R  
Sbjct: 61  TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-H 120

Query: 121 IPVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTT 169
           +P +  + T  S   P++ SQ+ TVVVENPM+VD  GKLVSNVVVGVTT
Sbjct: 121 LPPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTT 168

[Close]

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-47
Identity = 85/113 (75.22%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+CGGC TLLMY RGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 62  VRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGIS 115
           V+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVKCA+C++VT+VG S
Sbjct: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 175

[Close]

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.4e-47
Identity = 84/111 (75.68%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 2   QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGATS 61
           QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+CGGC TLLMY RGATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG 113
           V+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C++VT+VG
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL
Match: A0A1S3AZJ7 (protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL
Match: A0A0A0KJ18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL
Match: A0A5A7U9M7 (Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00490 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.7e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

[Close]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL
Match: A0A6J1ECU7 (vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111433013 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91
Identity = 168/171 (98.25%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGT+SSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

[Close]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL
Match: A0A6J1KY38 (vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111497397 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLIC GCRTLLMYARGAT
Sbjct: 229 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 288

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 289 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 348

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 349 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 399

[Close]

BLAST of CSPI06G37190 vs. NCBI nr
Match: XP_011658526.1 (vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 236 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 295

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 296 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 355

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 356 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 406

[Close]

BLAST of CSPI06G37190 vs. NCBI nr
Match: XP_008439499.1 (PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [Cucumis melo] >KGN49498.1 hypothetical protein Csa_004386 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of CSPI06G37190 vs. NCBI nr
Match: KAA0052452.1 (vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 304 MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 363

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI
Sbjct: 364 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 423

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 171
           PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
Sbjct: 424 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK 473

[Close]

BLAST of CSPI06G37190 vs. NCBI nr
Match: XP_022925664.1 (vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 345.1 bits (884), Expect = 3.4e-91
Identity = 168/171 (98.25%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 230 MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 289

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 290 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 349

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGT+SSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 350 PVHRRNGTLSSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 400

[Close]

BLAST of CSPI06G37190 vs. NCBI nr
Match: XP_023544395.1 (protein LSD1-like [Cucurbita pepo subsp. pepo] >XP_023544396.1 protein LSD1-like [Cucurbita pepo subsp. pepo] >XP_023544397.1 protein LSD1-like [Cucurbita pepo subsp. pepo] >XP_023544398.1 protein LSD1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.0e-90
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60
           MQSQLVCSGCRSILLYPGGATNVCCALC+TVTSVPPPGTDMAQLICGGCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCSTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGMSNVRVPI 120

Query: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 172
           PVHRRNGT+ SGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Sbjct: 121 PVHRRNGTLGSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of CSPI06G37190 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-64
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 185

[Close]

BLAST of CSPI06G37190 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-64
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of CSPI06G37190 vs. TAIR 10
Match: AT4G20380.3 (LSD1 zinc finger family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-64
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of CSPI06G37190 vs. TAIR 10
Match: AT4G20380.4 (LSD1 zinc finger family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-64
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

[Close]

BLAST of CSPI06G37190 vs. TAIR 10
Match: AT4G20380.5 (LSD1 zinc finger family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-64
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICGGCRTLLMYARG 60
           MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +ICGGCRT+LMY RG
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 61  ATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICHYVT 120
           A+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+C +VT
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 121 NVGISNVRVPIPVHRRNGTISSGMPPSSS-----SQSQTVVVENPMSVDESGKLVSNVVV 172
           NV +SN RVP+P +R NGT     PPS+S     SQ+QTVVVENPMSVDESGKLVSNVVV
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVV 180

The following BLAST results are available for this feature:

BLAST of CSPI06G37190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94077	5.3e-63	67.38	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]
Q6ASS2	2.0e-57	62.03	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
Q2QMB3	1.4e-55	63.31	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q0J7V9	1.4e-47	75.22	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	5.4e-47	75.68	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]

BLAST of CSPI06G37190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZJ7	1.1e-92	100.00	protein LSD1 OS=Cucumis melo OX=3656 GN=LOC103484280 PE=4 SV=1	[more]
A0A0A0KJ18	1.1e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526320 PE=4 SV=1	[more]
A0A5A7U9M7	5.7e-92	100.00	Vacuolar protein sorting-associated protein 2-like protein 2 OS=Cucumis melo var...	[more]
A0A6J1ECU7	1.7e-91	98.25	vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita moscha...	[more]
A0A6J1KY38	1.4e-90	97.08	vacuolar protein sorting-associated protein 2 homolog 2-like OS=Cucurbita maxima...	[more]

BLAST of CSPI06G37190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658526.1	2.4e-92	100.00	vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus]	[more]
XP_008439499.1	2.4e-92	100.00	PREDICTED: protein LSD1 [Cucumis melo] >XP_008439500.1 PREDICTED: protein LSD1 [...	[more]
KAA0052452.1	1.2e-91	100.00	vacuolar protein sorting-associated protein 2-like protein 2 [Cucumis melo var. ...	[more]
XP_022925664.1	3.4e-91	98.25	vacuolar protein sorting-associated protein 2 homolog 2-like [Cucurbita moschata...	[more]
XP_023544395.1	1.0e-90	97.66	protein LSD1-like [Cucurbita pepo subsp. pepo] >XP_023544396.1 protein LSD1-like...	[more]

BLAST of CSPI06G37190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20380.2	3.8e-64	67.38	LSD1 zinc finger family protein	[more]
AT4G20380.1	3.8e-64	67.38	LSD1 zinc finger family protein	[more]
AT4G20380.3	3.8e-64	67.38	LSD1 zinc finger family protein	[more]
AT4G20380.4	3.8e-64	67.38	LSD1 zinc finger family protein	[more]
AT4G20380.5	3.8e-64	67.38	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 7..31 e-value: 3.5E-10 score: 39.5 coord: 84..108 e-value: 6.6E-13 score: 48.2 coord: 46..70 e-value: 7.7E-13 score: 48.0
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 4..34 e-value: 6.3E-12 score: 42.9 coord: 81..111 e-value: 2.3E-11 score: 41.1 coord: 43..72 e-value: 5.4E-17 score: 59.1
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 1..169
None	No IPR available	PANTHER	PTHR31747:SF19	LSD1-LIKE PROTEIN	coord: 1..169
IPR036280	Multiheme cytochrome superfamily	SUPERFAMILY	48695	Multiheme cytochromes	coord: 21..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G37190.1	CSPI06G37190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0005634	nucleus