CSPI06G36880 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G36880
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 29732545 .. 29734037 (+)
RNA-Seq ExpressionCSPI06G36880
SyntenyCSPI06G36880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAACAAGAACTTCATAGAATTATAATTTTAAGCTAACTTTTCTCACTTAACTTTGTTTCGACGTGAAAATACCATGCATTAATTTTAAAAAAAAGATTACTTATTGTTTTTGTATAAATTAATAGATTTGTCCTTTTTTTTTTTTTTTGGACAAATAAACTATAGAAAGAAAAAAATAAAGCAACAAATGACATTACGTCTTTTTTATTTTTACTTTTTTTCTTTTATGAAAGAAGAAAAATAACGTATTGTTTATTACATCATAATTCATAACGGAGTTCTTAAACAAAGAAACGGAAAAAGAACTTCACAATCCATCTCTTTGCCGTTTTATTTTATGTTATTTTTGGTGGTGGTGGTGTTGTCAGCTTTCTCCGCCCTATCAACTAACCAGTTGAAAATAGTACCATAAACAACCTCCACATTCTCCTTCGTTTCTCCGATCAACTGATGCCACATTCCGGGATATACCTTCAACGTCTTGTCTTCACTCTCCGCCGCTTCGTACACATATCTCGCCGACCAGCTGTCGCAAACCACGTCGTCTTCTCCATGAACCATTAGCAATGGAACCCTGATTTCATGGCAGTTTCTCTTTATGTACTCGCACACTCGAAGAAACTCCAATGCTGTTGCCATTGGTGGCTTTCCTGAAAATCGCCGATTAGGGTTTCTTGCTACCAATCTTCTCTTCCATTCCTCTTTGTATGATTTGCTTGCTACGGGCTTCGATATCACCAACCGTAATGACGGCGCTAAAGACGCTGCTATTGGAAGAAGCTTCTCCAATGGCCAAATGGGTTTGAATTTCGCTGAGATTCCACACATGGAACCGTTTAACACTATTCCGTTCCAAACTCCCTCTTGCTTCAAGGATATCAGGATTGAAATTGCACCGCCTAGAGATTCTCCGTAGAGAAAAGCGGGGAGGTTTGGATGCTGTTCTCGAATAGAGTCGAAGAACTGTGTACAATCGAGGACGAGAAGTTCGATATCTCGGATTGAACCAGGGGCTCCCTCGGAGCGACCGTGGCCTTGAAGGTCGAGGGAGCAAACGAGGAACCCAAGTTTGGCTATGGCGATGCCAGTGAGCTCGAATATCCAGCCACTGTCACAGGTGTAGCCATGCACCATGGCTACAACCCCTTTGAGCTTTGAGTCAGAATCAGGCTGCCAAGATTGAGTGAAGATCTTCATCTTCTGTGCGTTGAGGATGAAGCTTTCATGGTGTGTAACATTGTGTTTCTTGTAGAATTCTTCCCTTGTTAGCTCTCCATAGGGGCTGTTCTCGTTGGCTTGGCTTATTGGGTGCGACATTTTCAGGTACTAAAAGAACAAATTCTATTATACAAAACAGAGAGAGTGCTGAAGAAGACAAAGTGGAGGACTGGAGAGGTATGTACTTCTGAATTTCGAATTGGCTTTTATTTGGTATTTGAAGAAGAATGATTATGTGGTGATCAAATGTGTTGTTTTTAAGTTTGTGTAGGG

mRNA sequence

AATAACAAGAACTTCATAGAATTATAATTTTAAGCTAACTTTTCTCACTTAACTTTGTTTCGACGTGAAAATACCATGCATTAATTTTAAAAAAAAGATTACTTATTGTTTTTGTATAAATTAATAGATTTGTCCTTTTTTTTTTTTTTTGGACAAATAAACTATAGAAAGAAAAAAATAAAGCAACAAATGACATTACGTCTTTTTTATTTTTACTTTTTTTCTTTTATGAAAGAAGAAAAATAACGTATTGTTTATTACATCATAATTCATAACGGAGTTCTTAAACAAAGAAACGGAAAAAGAACTTCACAATCCATCTCTTTGCCGTTTTATTTTATGTTATTTTTGGTGGTGGTGGTGTTGTCAGCTTTCTCCGCCCTATCAACTAACCAGTTGAAAATAGTACCATAAACAACCTCCACATTCTCCTTCGTTTCTCCGATCAACTGATGCCACATTCCGGGATATACCTTCAACGTCTTGTCTTCACTCTCCGCCGCTTCGTACACATATCTCGCCGACCAGCTGTCGCAAACCACGTCGTCTTCTCCATGAACCATTAGCAATGGAACCCTGATTTCATGGCAGTTTCTCTTTATGTACTCGCACACTCGAAGAAACTCCAATGCTGTTGCCATTGGTGGCTTTCCTGAAAATCGCCGATTAGGGTTTCTTGCTACCAATCTTCTCTTCCATTCCTCTTTGTATGATTTGCTTGCTACGGGCTTCGATATCACCAACCGTAATGACGGCGCTAAAGACGCTGCTATTGGAAGAAGCTTCTCCAATGGCCAAATGGGTTTGAATTTCGCTGAGATTCCACACATGGAACCGTTTAACACTATTCCGTTCCAAACTCCCTCTTGCTTCAAGGATATCAGGATTGAAATTGCACCGCCTAGAGATTCTCCGTAGAGAAAAGCGGGGAGGTTTGGATGCTGTTCTCGAATAGAGTCGAAGAACTGTGTACAATCGAGGACGAGAAGTTCGATATCTCGGATTGAACCAGGGGCTCCCTCGGAGCGACCGTGGCCTTGAAGGTCGAGGGAGCAAACGAGGAACCCAAGTTTGGCTATGGCGATGCCAGTGAGCTCGAATATCCAGCCACTGTCACAGGTGTAGCCATGCACCATGGCTACAACCCCTTTGAGCTTTGAGTCAGAATCAGGCTGCCAAGATTGAGTGAAGATCTTCATCTTCTGTGCGTTGAGGATGAAGCTTTCATGGTGTGTAACATTGTGTTTCTTGTAGAATTCTTCCCTTGTTAGCTCTCCATAGGGGCTGTTCTCGTTGGCTTGGCTTATTGGGTGCGACATTTTCAGGTACTAAAAGAACAAATTCTATTATACAAAACAGAGAGAGTGCTGAAGAAGACAAAGTGGAGGACTGGAGAGGTATGTACTTCTGAATTTCGAATTGGCTTTTATTTGGTATTTGAAGAAGAATGATTATGTGGTGATCAAATGTGTTGTTTTTAAGTTTGTGTAGGG

Coding sequence (CDS)

ATGTACTCGCACACTCGAAGAAACTCCAATGCTGTTGCCATTGGTGGCTTTCCTGAAAATCGCCGATTAGGGTTTCTTGCTACCAATCTTCTCTTCCATTCCTCTTTGTATGATTTGCTTGCTACGGGCTTCGATATCACCAACCGTAATGACGGCGCTAAAGACGCTGCTATTGGAAGAAGCTTCTCCAATGGCCAAATGGGTTTGAATTTCGCTGAGATTCCACACATGGAACCGTTTAACACTATTCCGTTCCAAACTCCCTCTTGCTTCAAGGATATCAGGATTGAAATTGCACCGCCTAGAGATTCTCCGTAG

Protein sequence

MYSHTRRNSNAVAIGGFPENRRLGFLATNLLFHSSLYDLLATGFDITNRNDGAKDAAIGRSFSNGQMGLNFAEIPHMEPFNTIPFQTPSCFKDIRIEIAPPRDSP*
Homology
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BLAST of CSPI06G36880 vs. ExPASy TrEMBL
Match: A0A0A0KIA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525505 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.8e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MYSHTRRNSNAVAIGGFPENRRLGFLATNLLFHSSLYDLLATGFDITNRNDGAKDAAIGR 60
           MYSHTRRNSNAVAIGGFPENRRLGFLATNLLFHSSLYDLLATGFDITNRNDGAKDAAIGR
Sbjct: 1   MYSHTRRNSNAVAIGGFPENRRLGFLATNLLFHSSLYDLLATGFDITNRNDGAKDAAIGR 60

Query: 61  SFSNGQMGLNFAEIPHMEPFNTIPFQTPSCFKDIRIEIAPPRDSP 106
           SFSNGQMGLNFAEIPHMEPFNTIPFQTPSCFKDIRIEIAPPRDSP
Sbjct: 61  SFSNGQMGLNFAEIPHMEPFNTIPFQTPSCFKDIRIEIAPPRDSP 105

The following BLAST results are available for this feature:
BLAST of CSPI06G36880 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G36880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIA43.8e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525505 PE=4 SV=1[more]
BLAST of CSPI06G36880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI06G36880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G36880.1CSPI06G36880.1mRNA