CSPI06G35610 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G35610
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 28921933 .. 28922831 (-)
RNA-Seq Expression	CSPI06G35610
Synteny	CSPI06G35610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCATTTATATTCCAACACCGTCAACTTTCCGCCAAGTTGAAAATGAGAAACAAAGAAAATCCATCGGCAAACCACTCCCAATCACCCACCCCAGAAAACCAGGGTCGAGTAAACCATGAAGCTTATCACTGGAGAATCAAGCGGAAGTAGCAGCAATACGAATGCTACTCCTACTGAAACCTAATGAGCAGGCACAAGCAAACTCCAATGCATACCGGCGACAAGCTCACTCCAGCTTCAGCAAGCAAACAAAAGAAAAAACCCGAACCGGGAAAAACACAGAGAAAATACTCATGGAGAATCAAAAGCTCGTCCGTACAGTCCTCTTAAACCCTTGAAAAAAGACGGTTGGTGTCTGTGAACACAGAAGAGAACAAGATGAGGAGGAGAGTGAAAGAAGATAAGATAATATTGAAAAGGAAAACACAAAGGGGTGGGGTAAAGCGAAACGGTTGAAGAAGATGGAAAAAAGCAAAAAGAAAAGAAGAAGAATCACCTGAATCAGAAGAGGGGAAAGGCAGTATCAAATGTAACCGGTTGGAAAATTAAAGCTCAGATCTCAGAGCAAGCTTCCCATGAAGCTCACGAGGTTCAGTTAGAGAGGAAGGTGATAGAGAAGTCCAAAACACAGGAAACTCCGCTTCAGAGGAATGGGGGAGTAAGAGGAAAAGAGTGCATAGTGGGAAGTGGGAAGTGGGAAGTGGGAAGTGAAAGAAGAAAAGGGGTTGGGTGAGATCTGTTGCAGGCAGATTCAGAGACACCTCCCCCACCGGAGGGCACGTCAGCAGTGAATCGGTGTGTCCGTTTCTCAACCCAAAATACCCCTTTTCCATCCAAATTTATTGAACTACACCCTTTGCCCCTCAACTCTCGAAATTCCGAGTACTACTAG

mRNA sequence

ATGTCAAGCATTTATATTCCAACACCGTCAACTTTCCGCCAAGTTGAAAATGAGAAACAAAGAAAATCCATCGGCAAACCACTCCCAATCACCCACCCCAGAAAACCAGGGTCGAGCACAAGCAAACTCCAATGCATACCGGCGACAAGCTCACTCCAGCTTCAGCAAGCAAACAAAAGAAAAAACCCGAACCGGGAAAAACACAGAGAAAATACTCATGGAGAATCAAAAGCTCGTCCGTACAGTCCTCTTAAACCCTTGAAAAAAGACGGTTGGTGTCTCGAAACGGTTGAAGAAGATGGAAAAAAGCAAAAAGAAAAGAAGAAGAATCACCTGAATCAGAAGAGGGGAAAGGCAGTATCAAATGTAACCGGTTGGAAAATTAAAGCTCAGATCTCAGAGCAAGCTTCCCATGAAGCTCACGAGGTTCAGTTAGAGAGGAAGGTGATAGAGAAGTCCAAAACACAGGAAACTCCGCTTCAGAGGAATGGGGGAGCAGATTCAGAGACACCTCCCCCACCGGAGGGCACGTCAGCAGTGAATCGGTGTGTCCGTTTCTCAACCCAAAATACCCCTTTTCCATCCAAATTTATTGAACTACACCCTTTGCCCCTCAACTCTCGAAATTCCGAGTACTACTAG

Coding sequence (CDS)

ATGTCAAGCATTTATATTCCAACACCGTCAACTTTCCGCCAAGTTGAAAATGAGAAACAAAGAAAATCCATCGGCAAACCACTCCCAATCACCCACCCCAGAAAACCAGGGTCGAGCACAAGCAAACTCCAATGCATACCGGCGACAAGCTCACTCCAGCTTCAGCAAGCAAACAAAAGAAAAAACCCGAACCGGGAAAAACACAGAGAAAATACTCATGGAGAATCAAAAGCTCGTCCGTACAGTCCTCTTAAACCCTTGAAAAAAGACGGTTGGTGTCTCGAAACGGTTGAAGAAGATGGAAAAAAGCAAAAAGAAAAGAAGAAGAATCACCTGAATCAGAAGAGGGGAAAGGCAGTATCAAATGTAACCGGTTGGAAAATTAAAGCTCAGATCTCAGAGCAAGCTTCCCATGAAGCTCACGAGGTTCAGTTAGAGAGGAAGGTGATAGAGAAGTCCAAAACACAGGAAACTCCGCTTCAGAGGAATGGGGGAGCAGATTCAGAGACACCTCCCCCACCGGAGGGCACGTCAGCAGTGAATCGGTGTGTCCGTTTCTCAACCCAAAATACCCCTTTTCCATCCAAATTTATTGAACTACACCCTTTGCCCCTCAACTCTCGAAATTCCGAGTACTACTAG

Protein sequence

MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKRKNPNREKHRENTHGESKARPYSPLKPLKKDGWCLETVEEDGKKQKEKKKNHLNQKRGKAVSNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAVNRCVRFSTQNTPFPSKFIELHPLPLNSRNSEYY*

Homology

[Close]

BLAST of CSPI06G35610 vs. ExPASy TrEMBL
Match: A0A0A0KKF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520270 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.5e-113
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR 60
           MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR
Sbjct: 1   MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR 60

Query: 61  KNPNREKHRENTHGESKARPYSPLKPLKKDGWCLETVEEDGKKQKEKKKNHLNQKRGKAV 120
           KNPNREKHRENTHGESKARPYSPLKPLK DGWCLETVEEDGKKQKEKKKNHLNQKRGKAV
Sbjct: 61  KNPNREKHRENTHGESKARPYSPLKPLKNDGWCLETVEEDGKKQKEKKKNHLNQKRGKAV 120

Query: 121 SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV 180
           SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV
Sbjct: 121 SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV 180

Query: 181 NRCVRFSTQNTPFPSKFIELHPLPLNSRNSEYY 214
           NRCVRFSTQNTPFPSKFIELHPLPLNS+NSEYY
Sbjct: 181 NRCVRFSTQNTPFPSKFIELHPLPLNSQNSEYY 213

[Close]

BLAST of CSPI06G35610 vs. ExPASy TrEMBL
Match: A0A5A7UA25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002090 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 129 KAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNG 165
           KAQISEQASHEAHEV LERKVIE+SKTQETPLQRNG
Sbjct: 18  KAQISEQASHEAHEVHLERKVIEQSKTQETPLQRNG 53

[Close]

BLAST of CSPI06G35610 vs. NCBI nr
Match: KGN49329.1 (hypothetical protein Csa_003685 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 5.2e-113
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR 60
           MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR
Sbjct: 1   MSSIYIPTPSTFRQVENEKQRKSIGKPLPITHPRKPGSSTSKLQCIPATSSLQLQQANKR 60

Query: 61  KNPNREKHRENTHGESKARPYSPLKPLKKDGWCLETVEEDGKKQKEKKKNHLNQKRGKAV 120
           KNPNREKHRENTHGESKARPYSPLKPLK DGWCLETVEEDGKKQKEKKKNHLNQKRGKAV
Sbjct: 61  KNPNREKHRENTHGESKARPYSPLKPLKNDGWCLETVEEDGKKQKEKKKNHLNQKRGKAV 120

Query: 121 SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV 180
           SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV
Sbjct: 121 SNVTGWKIKAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNGGADSETPPPPEGTSAV 180

Query: 181 NRCVRFSTQNTPFPSKFIELHPLPLNSRNSEYY 214
           NRCVRFSTQNTPFPSKFIELHPLPLNS+NSEYY
Sbjct: 181 NRCVRFSTQNTPFPSKFIELHPLPLNSQNSEYY 213

[Close]

BLAST of CSPI06G35610 vs. NCBI nr
Match: KAA0052602.1 (hypothetical protein E6C27_scaffold120G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-07
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 129 KAQISEQASHEAHEVQLERKVIEKSKTQETPLQRNG 165
           KAQISEQASHEAHEV LERKVIE+SKTQETPLQRNG
Sbjct: 18  KAQISEQASHEAHEVHLERKVIEQSKTQETPLQRNG 53

The following BLAST results are available for this feature:

BLAST of CSPI06G35610 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G35610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF9	2.5e-113	99.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520270 PE=4 SV=1	[more]
A0A5A7UA25	2.4e-07	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI06G35610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49329.1	5.2e-113	99.06	hypothetical protein Csa_003685 [Cucumis sativus]	[more]
KAA0052602.1	5.0e-07	94.44	hypothetical protein E6C27_scaffold120G002090 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G35610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G35610.1	CSPI06G35610.1	mRNA