CSPI06G35200 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G35200
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 28712235 .. 28712612 (+)
RNA-Seq ExpressionCSPI06G35200
SyntenyCSPI06G35200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCGGCACTAAAGTACTATAAAAACCTGCCACATCTCAACACACTACTACTTAACACGTCGCTACGAAAACTATTGCTAATTGATATTCAAATTCAAATACAACTTCCCTTAATATTAATAACAAGCAATATGGCCAAGTACTTTAGGTTGTGGGTTTGTCTCATCTTGTTAGCCTCCTACTACTTTGCAGCCTCCAATTCTCGACTACTTCAATCAGCTGATTTTGAGGCTAAGTCATATAAGCCAGCTCTGTTGGGTTCCAAACACAACTTTCACCTTGCCCTTGTGGCCGTCGTCGAAGATTTTGGAACCATTCATCAACGTGAGGCAGCACGTCAGTCACCGGGAGGCCCTGATCCCCACCACCACTAA

mRNA sequence

ATGGTTTCGGCACTAAAGTACTATAAAAACCTGCCACATCTCAACACACTACTACTTAACACGTCGCTACGAAAACTATTGCTAATTGATATTCAAATTCAAATACAACTTCCCTTAATATTAATAACAAGCAATATGGCCAAGTACTTTAGGTTGTGGGTTTGTCTCATCTTGTTAGCCTCCTACTACTTTGCAGCCTCCAATTCTCGACTACTTCAATCAGCTGATTTTGAGGCTAAGTCATATAAGCCAGCTCTGTTGGGTTCCAAACACAACTTTCACCTTGCCCTTGTGGCCGTCGTCGAAGATTTTGGAACCATTCATCAACGTGAGGCAGCACGTCAGTCACCGGGAGGCCCTGATCCCCACCACCACTAA

Coding sequence (CDS)

ATGGTTTCGGCACTAAAGTACTATAAAAACCTGCCACATCTCAACACACTACTACTTAACACGTCGCTACGAAAACTATTGCTAATTGATATTCAAATTCAAATACAACTTCCCTTAATATTAATAACAAGCAATATGGCCAAGTACTTTAGGTTGTGGGTTTGTCTCATCTTGTTAGCCTCCTACTACTTTGCAGCCTCCAATTCTCGACTACTTCAATCAGCTGATTTTGAGGCTAAGTCATATAAGCCAGCTCTGTTGGGTTCCAAACACAACTTTCACCTTGCCCTTGTGGCCGTCGTCGAAGATTTTGGAACCATTCATCAACGTGAGGCAGCACGTCAGTCACCGGGAGGCCCTGATCCCCACCACCACTAA

Protein sequence

MVSALKYYKNLPHLNTLLLNTSLRKLLLIDIQIQIQLPLILITSNMAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFGTIHQREAARQSPGGPDPHHH*
Homology
BLAST of CSPI06G35200 vs. ExPASy TrEMBL
Match: A0A0A0KLM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.4e-60
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0

Query: 1   MVSALKYYKNLPHLNTLLLNTSLRKLLLIDIQIQIQLPLILITSNMAKYFRLWVCLILLA 60
           MVSALKYYKNLPHLNTLLLNTSLRKLLLIDIQIQIQLPLILITSNMAKYFRLWVCLILLA
Sbjct: 1   MVSALKYYKNLPHLNTLLLNTSLRKLLLIDIQIQIQLPLILITSNMAKYFRLWVCLILLA 60

Query: 61  SYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFGTIHQREAARQSPGGP 120
           SYYFAASNSRLLQSADFEAKSYKPALLGSKHNF LALVAVVEDFGTIHQREAARQSPGGP
Sbjct: 61  SYYFAASNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQSPGGP 120

Query: 121 DPHHH 126
           DPHHH
Sbjct: 121 DPHHH 125

BLAST of CSPI06G35200 vs. ExPASy TrEMBL
Match: A0A0A0KNI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.0e-14
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 46  MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFG 105
           MAK   LWVCLIL+ASY FA S SR L+     AKS++PALLGS+ NFH+ +VA VE  G
Sbjct: 1   MAK-LSLWVCLILVASYCFAGSESRQLE-PKLAAKSHRPALLGSRDNFHIGMVA-VEGSG 60

Query: 106 TIHQREAARQSPGGPDPHHH 126
           +I QR  AR SPGGPDP HH
Sbjct: 61  SIPQRGVARLSPGGPDPRHH 77

BLAST of CSPI06G35200 vs. ExPASy TrEMBL
Match: A0A5A7UEP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008020 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 46  MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFG 105
           MAK   LWVCL+LLASY FA S SRLL+     A+S++PALLGS+ NFH+ LVA VE   
Sbjct: 1   MAK-ISLWVCLVLLASYCFAGSESRLLE-PKLAARSHRPALLGSRDNFHIGLVA-VEGSE 60

Query: 106 TIHQREAARQSPGGPDPHHH 126
           +I QR  AR SPGGPDP HH
Sbjct: 61  SIPQRGVARLSPGGPDPRHH 77

BLAST of CSPI06G35200 vs. NCBI nr
Match: KAE8647712.1 (hypothetical protein Csa_003203 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 5.1e-36
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 46  MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFG 105
           MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNF LALVAVVEDFG
Sbjct: 1   MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFG 60

Query: 106 TIHQREAARQSPGGPDPHHH 126
           TIHQREAARQSPGGPDPHHH
Sbjct: 61  TIHQREAARQSPGGPDPHHH 80

BLAST of CSPI06G35200 vs. NCBI nr
Match: KAA0052636.1 (hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK13190.1 hypothetical protein E5676_scaffold255G008020 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 46  MAKYFRLWVCLILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFG 105
           MAK   LWVCL+LLASY FA S SRLL+     A+S++PALLGS+ NFH+ LVA VE   
Sbjct: 1   MAK-ISLWVCLVLLASYCFAGSESRLLE-PKLAARSHRPALLGSRDNFHIGLVA-VEGSE 60

Query: 106 TIHQREAARQSPGGPDPHHH 126
           +I QR  AR SPGGPDP HH
Sbjct: 61  SIPQRGVARLSPGGPDPRHH 77

BLAST of CSPI06G35200 vs. NCBI nr
Match: KAG6581347.1 (hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-09
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 59  LASYYFAASNSRLLQSADFE----AKSYKPALLGSKHNFHLALVAVVEDFGTIHQREAAR 118
           L+   F  ++SR L   + E    AK+Y+PALLGSK NFH+ LVA VE  G+IHQR  AR
Sbjct: 685 LSLIQFTGADSRRLVGFNSEPNVPAKTYRPALLGSKENFHIGLVA-VEGSGSIHQRGVAR 744

Query: 119 QSPGGPDPHHH 126
            SPGGPDP HH
Sbjct: 745 LSPGGPDPRHH 754

BLAST of CSPI06G35200 vs. NCBI nr
Match: KAE8647711.1 (hypothetical protein Csa_003452 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 66   ASNSRLLQSADFEAKSYKPALLGSKHNFHLALVAVVEDFGTIHQREAARQSPGGPDPHHH 125
            +S SR L+     AKS++PALLGS+ NFH+ +VA VE  G+I QR  AR SPGGPDP HH
Sbjct: 964  SSESRQLE-PKLAAKSHRPALLGSRDNFHIGMVA-VEGSGSIPQRGVARLSPGGPDPRHH 1021

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLM59.4e-6099.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1[more]
A0A0A0KNI46.0e-1462.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1[more]
A0A5A7UEP57.8e-1462.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8647712.15.1e-3698.75hypothetical protein Csa_003203 [Cucumis sativus][more]
KAA0052636.11.6e-1362.50hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK131... [more]
KAG6581347.14.1e-0956.34hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647711.13.8e-0758.33hypothetical protein Csa_003452 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G35200.1CSPI06G35200.1mRNA