CSPI06G34290 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G34290
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 28202741 .. 28202932 (-)
RNA-Seq ExpressionCSPI06G34290
SyntenyCSPI06G34290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCGTTGAGTACTGTGACTGTAAGAGAAGATAGAAGTGACAGTTTGAGCCAACCCCACCATGATTCCCATCTTCACTTGCCCTCTCTTTGGGATCAAACGCCCAGAAATTCTCCTTCCCATTCTCTGACCGTTGATGTTGTTCATCATCTTAGCTTCTTCACCCATCTTCCAGAGGTATCAGTTTAG

mRNA sequence

ATGTTGTCGTTGAGTACTGTGACTGTAAGAGAAGATAGAAGTGACAGTTTGAGCCAACCCCACCATGATTCCCATCTTCACTTGCCCTCTCTTTGGGATCAAACGCCCAGAAATTCTCCTTCCCATTCTCTGACCGTTGATGTTGTTCATCATCTTAGCTTCTTCACCCATCTTCCAGAGGTATCAGTTTAG

Coding sequence (CDS)

ATGTTGTCGTTGAGTACTGTGACTGTAAGAGAAGATAGAAGTGACAGTTTGAGCCAACCCCACCATGATTCCCATCTTCACTTGCCCTCTCTTTGGGATCAAACGCCCAGAAATTCTCCTTCCCATTCTCTGACCGTTGATGTTGTTCATCATCTTAGCTTCTTCACCCATCTTCCAGAGGTATCAGTTTAG

Protein sequence

MLSLSTVTVREDRSDSLSQPHHDSHLHLPSLWDQTPRNSPSHSLTVDVVHHLSFFTHLPEVSV*
Homology
[Close]
BLAST of CSPI06G34290 vs. ExPASy TrEMBL
Match: A0A058ZTN9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01197 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 8  TVREDRSDSLSQPHHDSHLHLPSLWDQTPRNSPSHSLTV 47
          T RED SD +SQPHHD HLHLPSL D+T RN P ++  V
Sbjct: 37 TEREDGSDRMSQPHHDPHLHLPSLRDRTARNPPRNAYAV 75

[Close]
BLAST of CSPI06G34290 vs. NCBI nr
Match: KCW45173.1 (hypothetical protein EUGRSUZ_L01197 [Eucalyptus grandis])

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-04
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 8  TVREDRSDSLSQPHHDSHLHLPSLWDQTPRNSPSHSLTV 47
          T RED SD +SQPHHD HLHLPSL D+T RN P ++  V
Sbjct: 37 TEREDGSDRMSQPHHDPHLHLPSLRDRTARNPPRNAYAV 75

The following BLAST results are available for this feature:
BLAST of CSPI06G34290 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G34290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A058ZTN91.7e-0464.10Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01197 PE=4 SV... [more]
BLAST of CSPI06G34290 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW45173.13.4e-0464.10hypothetical protein EUGRSUZ_L01197 [Eucalyptus grandis][more]
BLAST of CSPI06G34290 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G34290.1CSPI06G34290.1mRNA