CSPI06G33460 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G33460
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Hydantoin utilization protein B
Location	Chr6: 27809536 .. 27810050 (+)
RNA-Seq Expression	CSPI06G33460
Synteny	CSPI06G33460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAGTTAGCTGTAAGCAGCTGTAAACAGAAGCTTAATATTTGAAATTTCCATTCCATAGACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA

mRNA sequence

ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA

Coding sequence (CDS)

ATGCCAAAAGCTCCTGTTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACATATTATACGCAATGGACCTTGAAAATCTCGACGAAACCGTGTGTTCGACACGCAGCCCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGATCAGGAATGAGCGCAGTGGGCGTGGATTGGGGAGACTCCCATTGGAGTAGCGTAAAAACGCGAACAAATTGGGAAGAAAAAGAAAATGAAAGCGTCAGAGTTCGTGCTCGGCCTCTATGGGCAAAGATGGGTTCGAATTGGAGAATATTCTCTGAAACTGAGCAATGGCAGAAGCAGAGGAACAGAAGTGGAATCCTAAGCAGAGGAATTATGGCGGAGTTGGACTTGTGGGAGGAAACCTTTCAAAAGCTGATCCGAATTCATTCAATTCTCTTGGATGATCATTCCTGA

Protein sequence

MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMSAVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSGILSRGIMAELDLWEETFQKLIRIHSILLDDHS*

Homology

[Close]

BLAST of CSPI06G33460 vs. ExPASy TrEMBL
Match: A0A0A0KN07 (Hydantoin utilization protein B OS=Cucumis sativus OX=3659 GN=Csa_6G513650 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.3e-83
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHNSGCDFSSN LYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS
Sbjct: 1   MPKAPVESEPHNSGCDFSSNTLYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
           AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG
Sbjct: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILSRGIMAELDLWEETFQKLIRIHSILLDDHS
Sbjct: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 152

[Close]

BLAST of CSPI06G33460 vs. ExPASy TrEMBL
Match: A0A5D3CM64 (Hydantoin utilization protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006390 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 120/152 (78.95%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHN GCDFSSNILYA DLENLDETVCSTRSPCLGNSMSEFPRT        
Sbjct: 1   MPKAPVESEPHNFGCDFSSNILYARDLENLDETVCSTRSPCLGNSMSEFPRT-------- 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
                          TRTNW EKEN  VRVRARPLWAK GSNWRIFSETEQWQKQRNRSG
Sbjct: 61  ---------------TRTNWGEKENVGVRVRARPLWAKRGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILS+GIMAELDLWEET+QKLIRI SILLDDHS
Sbjct: 121 ILSKGIMAELDLWEETYQKLIRIRSILLDDHS 129

[Close]

BLAST of CSPI06G33460 vs. NCBI nr
Match: KGN49101.1 (hypothetical protein Csa_003514 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 8.9e-83
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHNSGCDFSSN LYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS
Sbjct: 1   MPKAPVESEPHNSGCDFSSNTLYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
           AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG
Sbjct: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILSRGIMAELDLWEETFQKLIRIHSILLDDHS
Sbjct: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 152

[Close]

BLAST of CSPI06G33460 vs. NCBI nr
Match: TYK13037.1 (Hydantoin utilization protein B [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 120/152 (78.95%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   MPKAPVESEPHNSGCDFSSNILYAMDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMS 60
           MPKAPVESEPHN GCDFSSNILYA DLENLDETVCSTRSPCLGNSMSEFPRT        
Sbjct: 1   MPKAPVESEPHNFGCDFSSNILYARDLENLDETVCSTRSPCLGNSMSEFPRT-------- 60

Query: 61  AVGVDWGDSHWSSVKTRTNWEEKENESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSG 120
                          TRTNW EKEN  VRVRARPLWAK GSNWRIFSETEQWQKQRNRSG
Sbjct: 61  ---------------TRTNWGEKENVGVRVRARPLWAKRGSNWRIFSETEQWQKQRNRSG 120

Query: 121 ILSRGIMAELDLWEETFQKLIRIHSILLDDHS 153
           ILS+GIMAELDLWEET+QKLIRI SILLDDHS
Sbjct: 121 ILSKGIMAELDLWEETYQKLIRIRSILLDDHS 129

The following BLAST results are available for this feature:

BLAST of CSPI06G33460 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G33460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN07	4.3e-83	99.34	Hydantoin utilization protein B OS=Cucumis sativus OX=3659 GN=Csa_6G513650 PE=4 ...	[more]
A0A5D3CM64	1.5e-59	78.95	Hydantoin utilization protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CSPI06G33460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49101.1	8.9e-83	99.34	hypothetical protein Csa_003514 [Cucumis sativus]	[more]
TYK13037.1	3.1e-59	78.95	Hydantoin utilization protein B [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G33460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G33460.1	CSPI06G33460.1	mRNA