CSPI06G33300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G33300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	Chr6: 27721260 .. 27722780 (-)
RNA-Seq Expression	CSPI06G33300
Synteny	CSPI06G33300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTGTGGTTCCAGTTTTCTTCTGAAGTAATTTGCAATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTCTTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTTCAAGCCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGTGGGTTCTCTCTCTCTCTCTCTTTCATTCTATTTTTATCCCAGATTTTTGTTTGTTTGTTTGTTTCTTTATCTGTGTTCAAAAATTAGGGTTTGGAGAGGCCTCACCAGAATCCAAGGCAGCCAGAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTGTTGTAATTGCTCTGCCATGTTGTTGTGTGGGTTTTCATTGGTATTGATTCTAGTTTTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAAGCTCTTGGTAATACCCCAAATCTACTCTAGTTCTTTAGTTTGTCCAAATCTAGAGCGAGTTCATTAAGGGGCCAGAATTGCGTAAAAATAGAGTTTCTTAGAAGCATACAAAAAGAGGAATGAAATGCATGATCTTCATTCAGATGTTTTTCCTGGTTTCTTTTGGCCAAAACCTATCAGCATAGAAAACCAATGGTTAATAGATTCTACTTTAGTCAAGTCTGAAGAAAGATGAAGTTTATTGTTAATCAAGTTTCATATCTTGTTCTAACAATGAGGCTTCTAATTGTGGTAAATCTCTTGGCTTTGGCAGCATTGCGTATACTAGAGGTTAGTTCTGTACACTTAGTTGATGAATGCATCCCCACAGTGAAAAACACTCATAAGTAAGCGAATTGTTGATTCCAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAGTAAGAAAAACTCGTACATTTCTCTGCCATTTTCCTAACAGCATTATGATCAGTTGCTTGCTACCCTACTGAGATTAATCATTGTTTTCAGATGGTTAGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGACGAATTTCTGCATTGTGTTCACCTTTTGCAGCTAAACAGGAGGATACATAAATCCAGTGTGTATAATATGAGATGAGAGTGACAAAGAAAATGTAGCAAACCAAACCCAGTGTGGTAAAATATACAAAAACATTCATTCTGAATTCTTCTCAAGAACTACAAAATAATATTTATGCAATTTAAATTACTCAATCGTTG

mRNA sequence

CTTCCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTGTGGTTCCAGTTTTCTTCTGAAGTAATTTGCAATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTCTTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTTCAAGCCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGGTTTGGAGAGGCCTCACCAGAATCCAAGGCAGCCAGAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAAGCTCTTGCATTGCGTATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGACGAATTTCTGCATTGTGTTCACCTTTTGCAGCTAAACAGGAGGATACATAAATCCAGTGTGTATAATATGAGATGAGAGTGACAAAGAAAATGTAGCAAACCAAACCCAGTGTGGTAAAATATACAAAAACATTCATTCTGAATTCTTCTCAAGAACTACAAAATAATATTTATGCAATTTAAATTACTCAATCGTTG

Coding sequence (CDS)

ATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTCTTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTTCAAGCCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGGTTTGGAGAGGCCTCACCAGAATCCAAGGCAGCCAGAAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAAGCTCTTGCATTGCGTATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGA

Protein sequence

MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK*

Homology

[Close]

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.9e-53
Identity = 102/137 (74.45%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 36  RAFKPMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELME 95
           R  K  R+  +KMYVPGFGEASPE+KAA++LH+FFTYVAVRIV+AQLESYNPEAY+EL E
Sbjct: 35  RKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELRE 94

Query: 96  FLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESN 155
           FLD +S++DGDKF A+LMR SSRH  LALRILEVRSAYCKNDFEWDN+KRLAFK V +SN
Sbjct: 95  FLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSN 154

Query: 156 TRIMREYLTETSPSDTE 173
           TR+MREY+ ETS  +T+
Sbjct: 155 TRLMREYVLETSHVETD 171

[Close]

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot
Match: Q44177 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rbcX PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-07
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           + A  L ++ TY AVR+++ QL   NP   + L EF  RH + + D +L ++M E   +K
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 68

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESN---TRIMREYLTETSPSDTEK 174
            L LRIL VR    +   E+  L  +    + +SN    R + E LT+   S T++
Sbjct: 69  ELVLRILTVRENLAEGVLEF--LPEMVLSQIKQSNGNHRRSLLERLTQVDSSSTDQ 119

[Close]

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 64  RNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKALA 123
           + + N+FTY AVR V  QL   NP  Y      +  +   DG +FL +L +ES   + LA
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKES---QELA 153

Query: 124 LRILEVR-SAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETS--PSD 171
            R++  R   Y K   + D+ K   ++ +S+ N  +MRE L ET   PSD
Sbjct: 154 ERVMITRLHLYGKWIKKCDHGK--IYQEISDENLALMRERLMETVIWPSD 198

[Close]

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot
Match: Q31N04 (RuBisCO chaperone RbcX OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-04
Identity = 31/101 (30.69%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 63  ARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL 122
           AR L N+ TY AV ++  QL   NP     L  F    S  DG+ +LA+L+   +  + L
Sbjct: 20  ARMLVNYLTYQAVCVIRDQLAETNPAGAYRLQVFSAEFSFQDGEAYLAALL---NHDREL 79

Query: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYL 164
            LR++ VR    ++    D L  +    + E+N    R  L
Sbjct: 80  GLRVMTVREHLAEHIL--DYLPEMTIAQIQEANINHRRALL 115

[Close]

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot
Match: A0A0H3K9R3 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-04
Identity = 31/101 (30.69%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 63  ARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKAL 122
           AR L N+ TY AV ++  QL   NP     L  F    S  DG+ +LA+L+   +  + L
Sbjct: 29  ARMLVNYLTYQAVCVIRDQLAETNPAGAYRLQVFSAEFSFQDGEAYLAALL---NHDREL 88

Query: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYL 164
            LR++ VR    ++    D L  +    + E+N    R  L
Sbjct: 89  GLRVMTVREHLAEHIL--DYLPEMTIAQIQEANINHRRALL 124

[Close]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.6e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK
Sbjct: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPS+FSLPNLNRGNVFPVRPIKPRA K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.0e-89
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPS+FSLPNLNRGNVFPVRPIKPRA K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 148/175 (84.57%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRA--FKPMRLHCSKMYVPGFGEASP 60
           MESSAR+LSPTQFPSLF LPNLNR  VFP+ P KP+A  F  ++L C KMYVPGFGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  ESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSR 120
           E+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLDRHSLNDGDKFLASLMRESSR
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSR 120

Query: 121 HKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           HK+LALRILEVRSAYCKNDFEWDNLKRLA KM SESNTR+MREY+TETSPS+TEK
Sbjct: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.8e-76
Identity = 147/173 (84.97%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MES ARILSPT FPSLF LPNLNR N  PV P KP A K +RLHC KMYVPGFGEASPE+
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of CSPI06G33300 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 5.3e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK
Sbjct: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 338.2 bits (866), Expect = 4.2e-89
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPS+FSLPNLNRGNVFPVRPIKPRA K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 160/173 (92.49%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           ME SARILS TQFPSLF LPNLNR NVFPV P KP+A K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MEPSARILSSTQFPSLFPLPNLNRSNVFPVWPKKPKATKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYQELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 173

[Close]

BLAST of CSPI06G33300 vs. NCBI nr
Match: KGN49472.2 (hypothetical protein Csa_003132 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKM 151
           ALALRILEVRSAYCKNDFEWDNLKRLAFK+
Sbjct: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKV 150

[Close]

BLAST of CSPI06G33300 vs. NCBI nr
Match: XP_022132911.1 (chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 4.9e-77
Identity = 148/175 (84.57%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRA--FKPMRLHCSKMYVPGFGEASP 60
           MESSAR+LSPTQFPSLF LPNLNR  VFP+ P KP+A  F  ++L C KMYVPGFGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  ESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSR 120
           E+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLDRHSLNDGDKFLASLMRESSR
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSR 120

Query: 121 HKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 174
           HK+LALRILEVRSAYCKNDFEWDNLKRLA KM SESNTR+MREY+TETSPS+TEK
Sbjct: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of CSPI06G33300 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.8e-54
Identity = 102/137 (74.45%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 36  RAFKPMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELME 95
           R  K  R+  +KMYVPGFGEASPE+KAA++LH+FFTYVAVRIV+AQLESYNPEAY+EL E
Sbjct: 35  RKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELRE 94

Query: 96  FLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESN 155
           FLD +S++DGDKF A+LMR SSRH  LALRILEVRSAYCKNDFEWDN+KRLAFK V +SN
Sbjct: 95  FLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSN 154

Query: 156 TRIMREYLTETSPSDTE 173
           TR+MREY+ ETS  +T+
Sbjct: 155 TRLMREYVLETSHVETD 171

[Close]

BLAST of CSPI06G33300 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 64  RNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKALA 123
           + + N+FTY AVR V  QL   NP  Y      +  +   DG +FL +L +ES   + LA
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKES---QELA 153

Query: 124 LRILEVR-SAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETS--PSD 171
            R++  R   Y K   + D+ K   ++ +S+ N  +MRE L ET   PSD
Sbjct: 154 ERVMITRLHLYGKWIKKCDHGK--IYQEISDENLALMRERLMETVIWPSD 198

The following BLAST results are available for this feature:

BLAST of CSPI06G33300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	3.9e-53	74.45	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44177	3.2e-07	32.76	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6...	[more]
Q8L9X2	2.0e-04	35.45	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q31N04	5.7e-04	30.69	RuBisCO chaperone RbcX OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) ...	[more]
A0A0H3K9R3	5.7e-04	30.69	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]

BLAST of CSPI06G33300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMZ4	2.6e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1	[more]
A0A5D3CNU4	2.0e-89	97.11	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	2.0e-89	97.11	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A6J1BTL5	2.3e-77	84.57	chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KRH1	5.8e-76	84.97	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CSPI06G33300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134778.1	5.3e-92	100.00	chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]	[more]
XP_008440039.1	4.2e-89	97.11	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chape...	[more]
XP_038881664.1	1.2e-83	92.49	chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
KGN49472.2	1.5e-78	99.33	hypothetical protein Csa_003132 [Cucumis sativus]	[more]
XP_022132911.1	4.9e-77	84.57	chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]	[more]

BLAST of CSPI06G33300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	2.8e-54	74.45	Chaperonin-like RbcX protein	[more]
AT5G19855.1	1.4e-05	35.45	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 61..136 e-value: 3.4E-23 score: 82.0
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..133
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 48..140 e-value: 2.6E-36 score: 126.6
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 55..130
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G33300.1	CSPI06G33300.1	mRNA
CSPI06G33300.2	CSPI06G33300.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0044183	protein folding chaperone