CSPI06G32110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G32110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RSN1_7TM domain-containing protein
Location	Chr6: 27158952 .. 27159564 (-)
RNA-Seq Expression	CSPI06G32110
Synteny	CSPI06G32110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCATAGAGCAACCAAGAGCAATCTTGTTGATTCAGATCTTGAAACAAATCAACATGGTTTCAAAGACAATAATGGTCTCCCTCTATGCCCCAAGCCTCGTCGTCTCGAGCCTGCCATCCCAAGTTTCCTTGCCCCTCTCATATGCGCCCATCACATTCACAGGTCACTTTCTCATCTAACATAGTGACAAAATTTTACATTCGAACTTTAAGAATTAAGCTCCATTAACACACCACCACGTTTGCTTAATTTGCTTGTCTTTCTTTCTCCAGCCAATCAAGTGGCGATTCAAGAAGTGAGATTCTCAATATCATCGAAGGAAAGGTTAGGAAATGAATTTCTTTTTGGTGAAACTTATTAATGGATTCACGTAATGAAAATCATCGTAAATAATCCATAAATGTTTAATACATGTGCAGAATGTTGAAGGGAGAGATTGCTTGTCCTCCGGTTGCTACCCATCGTGTTATTCAGGTTCTCCGCCAGGAAGAACAGAGAATCCACTGGTTCATGACATGTATTTTCTTCATCAAATGGAGATTCATTCCCCATTTTCAAGGACCAACCTTTCGGATAAGTTCAACCTGACCTCAGCCTCACCTACATGA

mRNA sequence

ATGCATCATAGAGCAACCAAGAGCAATCTTGTTGATTCAGATCTTGAAACAAATCAACATGGTTTCAAAGACAATAATGGTCTCCCTCTATGCCCCAAGCCTCGTCGTCTCGAGCCTGCCATCCCAAGTTTCCTTGCCCCTCTCATATGCGCCCATCACATTCACAGCCAATCAAGTGGCGATTCAAGAAGTGAGATTCTCAATATCATCGAAGGAAAGAATGTTGAAGGGAGAGATTGCTTGTCCTCCGGTTGCTACCCATCGTGTTATTCAGGTTCTCCGCCAGGAAGAACAGAGAATCCACTGGTTCATGACATGTATTTTCTTCATCAAATGGAGATTCATTCCCCATTTTCAAGGACCAACCTTTCGGATAAGTTCAACCTGACCTCAGCCTCACCTACATGA

Coding sequence (CDS)

ATGCATCATAGAGCAACCAAGAGCAATCTTGTTGATTCAGATCTTGAAACAAATCAACATGGTTTCAAAGACAATAATGGTCTCCCTCTATGCCCCAAGCCTCGTCGTCTCGAGCCTGCCATCCCAAGTTTCCTTGCCCCTCTCATATGCGCCCATCACATTCACAGCCAATCAAGTGGCGATTCAAGAAGTGAGATTCTCAATATCATCGAAGGAAAGAATGTTGAAGGGAGAGATTGCTTGTCCTCCGGTTGCTACCCATCGTGTTATTCAGGTTCTCCGCCAGGAAGAACAGAGAATCCACTGGTTCATGACATGTATTTTCTTCATCAAATGGAGATTCATTCCCCATTTTCAAGGACCAACCTTTCGGATAAGTTCAACCTGACCTCAGCCTCACCTACATGA

Protein sequence

MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSGDSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSRTNLSDKFNLTSASPT*

Homology

[Close]

BLAST of CSPI06G32110 vs. ExPASy TrEMBL
Match: A0A0A0KHD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.9e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

Query: 121 TNLSDKFNLTSASPT 136
           TNLSDKFNLTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of CSPI06G32110 vs. ExPASy TrEMBL
Match: A0A5D3CKV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00940 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.9e-68
Identity = 126/135 (93.33%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           MHH ATKSNLVDSDLETNQ GFKDNNGLPLCPKPRRLEPAIPSFL PL CAHHIHSQSSG
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           DSRSE+LNIIEGKNVE RDC SSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEI S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

Query: 121 TNLSDKFNLTSASPT 136
           TNLSDKFNLTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of CSPI06G32110 vs. ExPASy TrEMBL
Match: A0A6J1BUP6 (uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005918 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48
Identity = 101/136 (74.26%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MH-HRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSS 60
           MH H ATKSNLVDS  ETN     + N LPLCPKPRR  P IP+FL PL CA  IHSQSS
Sbjct: 2   MHRHIATKSNLVDSSPETN----NNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSS 61

Query: 61  GDSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFS 120
           G+ R+ ILNII GKNVEGRDCL S CYPSCYSGSPP RTENPLVHD+YFLHQME+ SPFS
Sbjct: 62  GEGRNGILNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFS 121

Query: 121 RTNLSDKFNLTSASPT 136
            T LS+KF+LTSASPT
Sbjct: 122 HTKLSEKFSLTSASPT 133

[Close]

BLAST of CSPI06G32110 vs. ExPASy TrEMBL
Match: A0A2C9WEC2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G109600 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.3e-38
Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           M+H   KSNLVDS  +T + GF+ NN  PLCPKPRRL P IP FL    C    HSQ   
Sbjct: 1   MYHLPVKSNLVDSSSDTTKLGFRGNN-QPLCPKPRRLGPTIPEFLK---CTK--HSQPIS 60

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           D R+ ILN+I  K ++GR+ + SGC PSCYSGSPPGRT+NPLVHD++F+HQME+ SPF+R
Sbjct: 61  DGRTGILNLITDKGIDGRESICSGCSPSCYSGSPPGRTDNPLVHDVHFIHQMELLSPFTR 120

Query: 121 TNLSDKFNLTSASP 135
           T LSDKF  TSASP
Sbjct: 121 TKLSDKFGFTSASP 128

[Close]

BLAST of CSPI06G32110 vs. ExPASy TrEMBL
Match: A0A2I4FDA1 (uncharacterized protein LOC108997710 OS=Juglans regia OX=51240 GN=LOC108997710 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.4e-37
Identity = 84/135 (62.22%), Postives = 97/135 (71.85%), Query Frame = 0


Query: 1   MHHRA-TKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSS 60
           MHH A  KSNLVDS  ETN    + NN  PLCPKPRRL  AIP FL P  C+   HSQ +
Sbjct: 1   MHHLAGGKSNLVDSGSETNNLVSRGNNDHPLCPKPRRLGAAIPEFLKPQRCSK--HSQFN 60

Query: 61  GDSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFS 120
            D R +ILNII  KN +GR+ + +GC PSC+ GSPPGRT NPLVHD+ F+HQME+ SPF+
Sbjct: 61  TDGRKDILNIISEKNTDGRETVCNGCTPSCFPGSPPGRTGNPLVHDVQFVHQMELVSPFA 120

Query: 121 RTNLSDKFNLTSASP 135
           RT LSDKF  TSASP
Sbjct: 121 RTKLSDKFGFTSASP 133

[Close]

BLAST of CSPI06G32110 vs. NCBI nr
Match: XP_031743884.1 (uncharacterized protein LOC116404717 [Cucumis sativus] >KGN48953.1 hypothetical protein Csa_003840 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 3.9e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG
Sbjct: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR
Sbjct: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120

Query: 121 TNLSDKFNLTSASPT 136
           TNLSDKFNLTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of CSPI06G32110 vs. NCBI nr
Match: KAA0025640.1 (hypothetical protein E6C27_scaffold253G001330 [Cucumis melo var. makuwa] >TYK12513.1 hypothetical protein E5676_scaffold255G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 126/135 (93.33%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           MHH ATKSNLVDSDLETNQ GFKDNNGLPLCPKPRRLEPAIPSFL PL CAHHIHSQSSG
Sbjct: 1   MHHIATKSNLVDSDLETNQPGFKDNNGLPLCPKPRRLEPAIPSFLVPLRCAHHIHSQSSG 60

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           DSRSE+LNIIEGKNVE RDC SSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEI S FSR
Sbjct: 61  DSRSEVLNIIEGKNVEARDCFSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIRSSFSR 120

Query: 121 TNLSDKFNLTSASPT 136
           TNLSDKFNLTSASPT
Sbjct: 121 TNLSDKFNLTSASPT 135

[Close]

BLAST of CSPI06G32110 vs. NCBI nr
Match: XP_038881848.1 (uncharacterized protein LOC120073212 [Benincasa hispida])

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-63
Identity = 118/135 (87.41%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           M+H ATKSNLVDS L+T+Q GFKDNN LPLCPKPRRLEP IPSFLAPL CAHH+HSQSSG
Sbjct: 48  MYHIATKSNLVDSGLQTDQLGFKDNNSLPLCPKPRRLEPVIPSFLAPLGCAHHVHSQSSG 107

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           D+RS ILNII GK+VEGRDCL SGCYPSCYSGSPPGRTENPLVHD+YFLHQMEIHSPFSR
Sbjct: 108 DTRSGILNIIAGKHVEGRDCLCSGCYPSCYSGSPPGRTENPLVHDVYFLHQMEIHSPFSR 167

Query: 121 TNLSDKFNLTSASPT 136
           TNLSDKF+LTSASPT
Sbjct: 168 TNLSDKFSLTSASPT 182

[Close]

BLAST of CSPI06G32110 vs. NCBI nr
Match: XP_022133306.1 (uncharacterized protein LOC111005918 [Momordica charantia])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 101/136 (74.26%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 1   MH-HRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSS 60
           MH H ATKSNLVDS  ETN     + N LPLCPKPRR  P IP+FL PL CA  IHSQSS
Sbjct: 2   MHRHIATKSNLVDSSPETN----NNVNCLPLCPKPRRPRPTIPNFLVPLRCADRIHSQSS 61

Query: 61  GDSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFS 120
           G+ R+ ILNII GKNVEGRDCL S CYPSCYSGSPP RTENPLVHD+YFLHQME+ SPFS
Sbjct: 62  GEGRNGILNIIAGKNVEGRDCLCSNCYPSCYSGSPPRRTENPLVHDVYFLHQMELLSPFS 121

Query: 121 RTNLSDKFNLTSASPT 136
            T LS+KF+LTSASPT
Sbjct: 122 HTKLSEKFSLTSASPT 133

[Close]

BLAST of CSPI06G32110 vs. NCBI nr
Match: KAG6594753.1 (hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-43
Identity = 91/121 (75.21%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MHHRATKSNLVDSDLETNQHGFKDNNGLPLCPKPRRLEPAIPSFLAPLICAHHIHSQSSG 60
           MHH A KSNLVDS  ET      D+N  PLCPKPRRL PAIPSFLAP  CAH IHSQSS 
Sbjct: 4   MHHIAAKSNLVDSSPET------DHNAPPLCPKPRRLRPAIPSFLAPFRCAHRIHSQSSS 63

Query: 61  DSRSEILNIIEGKNVEGRDCLSSGCYPSCYSGSPPGRTENPLVHDMYFLHQMEIHSPFSR 120
           D RS ILNII GK VEGRDCL   CYPSCYSGSPPGRT NPLV D+YFLHQ+EI SPFSR
Sbjct: 64  DPRSAILNIIAGKGVEGRDCLCLNCYPSCYSGSPPGRTGNPLVQDVYFLHQVEIQSPFSR 118

Query: 121 T 122
           T
Sbjct: 124 T 118

The following BLAST results are available for this feature:

BLAST of CSPI06G32110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G32110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD1	1.9e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507270 PE=4 SV=1	[more]
A0A5D3CKV6	5.9e-68	93.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1BUP6	6.8e-48	74.26	uncharacterized protein LOC111005918 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A2C9WEC2	8.3e-38	61.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G109600 PE=4 SV=...	[more]
A0A2I4FDA1	2.4e-37	62.22	uncharacterized protein LOC108997710 OS=Juglans regia OX=51240 GN=LOC108997710 P...	[more]

BLAST of CSPI06G32110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743884.1	3.9e-74	100.00	uncharacterized protein LOC116404717 [Cucumis sativus] >KGN48953.1 hypothetical ...	[more]
KAA0025640.1	1.2e-67	93.33	hypothetical protein E6C27_scaffold253G001330 [Cucumis melo var. makuwa] >TYK125...	[more]
XP_038881848.1	3.1e-63	87.41	uncharacterized protein LOC120073212 [Benincasa hispida]	[more]
XP_022133306.1	1.4e-47	74.26	uncharacterized protein LOC111005918 [Momordica charantia]	[more]
KAG6594753.1	3.6e-43	75.21	hypothetical protein SDJN03_11306, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI06G32110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33384:SF17	BNAC07G32200D PROTEIN	coord: 1..133
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G32110.1	CSPI06G32110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016020	membrane