CSPI06G32040 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G32040
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein preY, mitochondrial, putative
LocationChr6: 27113680 .. 27115680 (+)
RNA-Seq ExpressionCSPI06G32040
SyntenyCSPI06G32040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGGTGCACTTAATGATGGTATAGATAGGATACATACCCTCTAATAGTAATACGGAGTCTTCAGTCTTCGGCTGTGTATTTAAAAAGCCTTTGGAAGAAGAAATCCAGACTGTGGAAAGGTTGAATACAACTCCTTCAAAAACCTCTCCACTTTCTTCCGACTTCATTCTAAAATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTCATCATTATTCCTTTTCGATTCTATCATTTTCAGTCATTCTCCTCAATCTGTGGTGCATAATTTGGTTTTATTTTCTGTTTTTTCATTAGGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATATGATTGGTGTTTCTTTCCCTGTAAGTATCACCTTGAATTCTGTAAAAAAAAATTGTACTCCGCTATAATTCTTCATCTCTGACCATTTTCTGTTTTCATTGTGATTTTCTTTTTCCTTACTAGCTTTCTGGTTCTTCTTTTAGATCATCTAGGGTGCTGTAGCTGGTTTGTTTTATGAAGTATTTCTCAATTTTGCTAGGTTAGGTAGTAAAAATAGTTGTAGGGATCAGCATCTAGTGTTGAAACCTTTGCTTCTTTTTTTTTTCTCTCCTGTTGGAATGCAATCAATCCATTATCTAGCACTATGAATGACCGAGCAAGCATAGGGTTCAGGGAGGTATTCGTATCATATGTTATTTAAGATTATAGACTAAAGGTTTAGAGTTAGAGATATATATAAACTCTCTAATCTATTGATGCCCCTTTATTATATGATATGAATAAACTGTTCTCTCTTTGCTCAAAGATATAAGTAGCATAATATTAGTGAACTACATGGATCTGTATGTTGATGGTTGTTATTTACGCTTTCTTGTTTTCTTTATTTGTCTGTTTTATAACACCCCTTGTTTGGGGGAGTTAGGTTATAGGACATCTGTTTGTTGTATGTTGTAATTTTGCATACTGTTGTGTTAGATAAGGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGAAAATGATGATGCATTGAAAGATGAGGATACTGTTGAGATTACTCGAGAAAAATGAGCACTGTTTAGTTTGGGGGTCGAAGACAGTTTTTATTTCTTGAGCTCAATAATCAGAAGAGATGTCAACATAACGCCACAACACTTCACACTTGTATTTGTAAGTTTCCACTTTAGAATGAATTGAATGGTTTCATTTTCTCAAACTCACTGGTGTTGCCCAATAAAATAGTCAGATTAGACCACTTGTCCACAGTTCTTTCTTAGGGTGATTTGAAATTGTTATGGTGGAAACTAAACAAGAGAATATCCTCTAAAATTTTCTGTTCAAAACTTTTGGGCTTGTGCTGAACTATCTGATGGTGATTTGAAAAGTTGCTGGCTTAACCTACCTTTATTCCTTGTTTTCCGTAACATCAACTCCTTATCCTTTGGGTTTAACACAACATACCACAATCACATGTGATTTGATAATTGATAATATTTTTCTTCCATGAGGTGAGAAGAACGGGGAAACAGGCGGTGCCATAGTCGCGATAGTTATGGTTATGGCTATTATCGTTATTATTATAGTTTTCTACCTTTACCAATTTACTGTTTTTCAAATTGTATAGTGGGCACCATCTCATTGAGTTCTTGATAGTTAAATGGGGGTTGAAGTGTGAAAAACTCTTTGATGGGTTTGCATTCATGCCATCGCAAAAGGCATCAAAGTTGAGTGGCAATATTCAATTGGCTGAGATTGTTCTCAATTCGGAACCAGTCAAGGTTATGCAATACATTTATATTAATTTTGTGAAACTCTTTTTTTAGTAGAGCTTCGTAACCTGATTTAGGAGACTTCTTGTGTAAAATGACGATGTTCAAGTGTTTGGTTTAGTTGTTAATTTCATTCTTCACCCTTGTTGATGCAAGTGA

mRNA sequence

GGGAGGTGCACTTAATGATGGTATAGATAGGATACATACCCTCTAATAGTAATACGGAGTCTTCAGTCTTCGGCTGTGTATTTAAAAAGCCTTTGGAAGAAGAAATCCAGACTGTGGAAAGGTTGAATACAACTCCTTCAAAAACCTCTCCACTTTCTTCCGACTTCATTCTAAAATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATATGATTGGTGTTTCTTTCCCTGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGAAAATGATGATGCATTGAAAGATGAGGATACTGTTGAGATTACTCGAGAAAAATGAGCACTGTTTAGTTTGGGGGTCGAAGACAGTTTTTATTTCTTGAGCTCAATAATCAGAAGAGATGTCAACATAACGCCACAACACTTCACACTTGTATTTGTAAGTTTCCACTTTAGAATGAATTGAATGGTTTCATTTTCTCAAACTCACTGGTGTTGCCCAATAAAATAGTCAGATTAGACCACTTGTCCACAGTTCTTTCTTAGGGTGATTTGAAATTGTTATGGTGGAAACTAAACAAGAGAATATCCTCTAAAATTTTCTGTTCAAAACTTTTGGGCTTGTGCTGAACTATCTGATGGTGATTTGAAAAGTTGCTGGCTTAACCTACCTTTATTCCTTGTTTTCCGTAACATCAACTCCTTATCCTTTGGGTTTAACACAACATACCACAATCACATGTGATTTGATAATTGATAATATTTTTCTTCCATGAGGTGAGAAGAACGGGGAAACAGGCGGTGCCATAGTCGCGATAGTTATGGTTATGGCTATTATCGTTATTATTATAGTTTTCTACCTTTACCAATTTACTGTTTTTCAAATTGTATAGTGGGCACCATCTCATTGAGTTCTTGATAGTTAAATGGGGGTTGAAGTGTGAAAAACTCTTTGATGGGTTTGCATTCATGCCATCGCAAAAGGCATCAAAGTTGAGTGGCAATATTCAATTGGCTGAGATTGTTCTCAATTCGGAACCAGTCAAGGTTATGCAATACATTTATATTAATTTTGTGAAACTCTTTTTTTAGTAGAGCTTCGTAACCTGATTTAGGAGACTTCTTGTGTAAAATGACGATGTTCAAGTGTTTGGTTTAGTTGTTAATTTCATTCTTCACCCTTGTTGATGCAAGTGA

Coding sequence (CDS)

ATGGTGAGAATAACCAAAGCCCTTCTGAAGGAAGCGACCTCTGGTTTCACCAACACGCTCTCCCAAATCCTTGTCTGCCCCCTCTCCAAACAACCTCTAAGGTATTGTGCGGCCTCGAATTCTCTCATCAGCGATATGATTGGTGTTTCTTTCCCTGGACGGAATTCCTTGTTTGGTGCCGAAGGAAGGAAGAATAATTGA

Protein sequence

MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSLFGAEGRKNN*
Homology
BLAST of CSPI06G32040 vs. ExPASy Swiss-Prot
Match: Q5U1Z8 (Protein preY, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pyurf PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 16 FTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFP 53
          F   L Q LVCPLSK+PLRY A++N LI+D +G+++P
Sbjct: 48 FHPALLQFLVCPLSKKPLRYDASTNELINDELGIAYP 84

BLAST of CSPI06G32040 vs. ExPASy Swiss-Prot
Match: Q96I23 (Protein preY, mitochondrial OS=Homo sapiens OX=9606 GN=PYURF PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.5e-05
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 10 KEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFP 53
          +E    F   L + LVCPLSK+PLRY A++N LI++ +G+++P
Sbjct: 44 EEPPRDFDPALLEFLVCPLSKKPLRYEASTNELINEELGIAYP 86

BLAST of CSPI06G32040 vs. ExPASy Swiss-Prot
Match: Q2T9V7 (Protein preY, mitochondrial OS=Bos taurus OX=9913 GN=PREY PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-05
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 16 FTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFP 53
          F   L + LVCPLSK+PLRY A++N LI++ +G+++P
Sbjct: 50 FDQALLEFLVCPLSKKPLRYEASTNELINEELGIAYP 86

BLAST of CSPI06G32040 vs. ExPASy Swiss-Prot
Match: Q9D1C3 (Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 16 FTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFP 53
          F   L Q LVCPLSK+PLRY A++N L+++ +G+++P
Sbjct: 48 FHPALLQFLVCPLSKKPLRYEASTNELVNEELGIAYP 84

BLAST of CSPI06G32040 vs. ExPASy Swiss-Prot
Match: Q5M8Z2 (Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-04
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFP 53
          + R  +  LK++ + F  TL Q LVCPLS++ LRY  ++N LI+D +G+++P
Sbjct: 41 VARSPEQSLKDSKT-FDPTLLQFLVCPLSRKSLRYEESTNELINDELGIAYP 91

BLAST of CSPI06G32040 vs. ExPASy TrEMBL
Match: A0A0A0KHC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507170 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-19
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISD IGVSFP R+ +
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDTIGVSFPIRDGI 57

BLAST of CSPI06G32040 vs. ExPASy TrEMBL
Match: A0A5A7SJZ8 (UPF0434 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001030 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVRI+KALLKEA+SGFTNTLSQILVCPLSKQPLRYC ASNSLISD IGVSFP R+ +
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFPIRDGI 57

BLAST of CSPI06G32040 vs. ExPASy TrEMBL
Match: A0A1S3B2Q6 (UPF0434 protein ECH_0194 OS=Cucumis melo OX=3656 GN=LOC103485154 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVRI+KALLKEA+SGFTNTLSQILVCPLSKQPLRYC ASNSLISD IGVSFP R+ +
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFPIRDGI 57

BLAST of CSPI06G32040 vs. ExPASy TrEMBL
Match: A0A6J1BTN7 (uncharacterized protein LOC111005251 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005251 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSLF 59
          MVRI+ ALLK+A SG T TLS+ILVCPL+KQPLRYC ASNSLISD IGVSFPG  ++F
Sbjct: 1  MVRISGALLKDAGSGLTKTLSEILVCPLTKQPLRYCEASNSLISDTIGVSFPGLVAVF 58

BLAST of CSPI06G32040 vs. ExPASy TrEMBL
Match: A0A6J1GDI4 (uncharacterized protein LOC111453193 OS=Cucurbita moschata OX=3662 GN=LOC111453193 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNS---L 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLRYC ASNSLISD I VSFP R     L
Sbjct: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60

Query: 61 FGAEGR 64
             EGR
Sbjct: 61 VPKEGR 66

BLAST of CSPI06G32040 vs. NCBI nr
Match: XP_011658060.1 (uncharacterized protein LOC101219142 [Cucumis sativus] >KGN48943.1 hypothetical protein Csa_003028 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 8.8e-19
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISD IGVSFP R+ +
Sbjct: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDTIGVSFPIRDGI 57

BLAST of CSPI06G32040 vs. NCBI nr
Match: XP_008440859.1 (PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo] >KAA0025649.1 UPF0434 protein [Cucumis melo var. makuwa] >TYK12522.1 UPF0434 protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVRI+KALLKEA+SGFTNTLSQILVCPLSKQPLRYC ASNSLISD IGVSFP R+ +
Sbjct: 1  MVRISKALLKEASSGFTNTLSQILVCPLSKQPLRYCEASNSLISDTIGVSFPIRDGI 57

BLAST of CSPI06G32040 vs. NCBI nr
Match: XP_038883681.1 (UPF0434 protein Ecaj_0131 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-15
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MV+I+KALLKEA+SGFT TLS+ILVCPLSKQPLRYC ASNSLISD I VSFP R+ +
Sbjct: 1  MVKISKALLKEASSGFTKTLSEILVCPLSKQPLRYCEASNSLISDTICVSFPIRDGI 57

BLAST of CSPI06G32040 vs. NCBI nr
Match: XP_022132377.1 (uncharacterized protein LOC111005251 isoform X1 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSLF 59
          MVRI+ ALLK+A SG T TLS+ILVCPL+KQPLRYC ASNSLISD IGVSFPG  ++F
Sbjct: 1  MVRISGALLKDAGSGLTKTLSEILVCPLTKQPLRYCEASNSLISDTIGVSFPGLVAVF 58

BLAST of CSPI06G32040 vs. NCBI nr
Match: KAG6603894.1 (hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNS---L 60
          MVRI+++LLKEA SG T TLS+ILVCPLSKQPLRYC ASNSLISD I VSFP R     L
Sbjct: 1  MVRISQSLLKEAGSGLTKTLSEILVCPLSKQPLRYCEASNSLISDTIRVSFPIRGGVPCL 60

Query: 61 FGAEGR 64
             EGR
Sbjct: 61 VPKEGR 66

BLAST of CSPI06G32040 vs. TAIR 10
Match: AT4G35905.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-13
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MVRITKALLKEATSGFTNTLSQILVCPLSKQPLRYCAASNSLISDMIGVSFPGRNSL 58
          MVR+ + LLK+A +    TLS+ILVCPLSKQPLR+C  + SL+SD IGVSFP ++ +
Sbjct: 1  MVRLNRVLLKDAGNVIDKTLSEILVCPLSKQPLRFCEKTKSLVSDTIGVSFPIKDGI 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q5U1Z82.6e-0556.76Protein preY, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pyurf PE=3 SV=1[more]
Q96I237.5e-0546.51Protein preY, mitochondrial OS=Homo sapiens OX=9606 GN=PYURF PE=1 SV=1[more]
Q2T9V79.8e-0551.35Protein preY, mitochondrial OS=Bos taurus OX=9913 GN=PREY PE=3 SV=1[more]
Q9D1C31.3e-0451.35Protein preY, mitochondrial OS=Mus musculus OX=10090 GN=Pyurf PE=1 SV=1[more]
Q5M8Z24.9e-0442.31Protein preY, mitochondrial OS=Xenopus tropicalis OX=8364 GN=pyurf PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KHC14.3e-1991.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507170 PE=4 SV=1[more]
A0A5A7SJZ81.4e-1785.96UPF0434 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010... [more]
A0A1S3B2Q61.4e-1785.96UPF0434 protein ECH_0194 OS=Cucumis melo OX=3656 GN=LOC103485154 PE=4 SV=1[more]
A0A6J1BTN71.4e-1475.86uncharacterized protein LOC111005251 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1GDI41.2e-1371.21uncharacterized protein LOC111453193 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
Match NameE-valueIdentityDescription
XP_011658060.18.8e-1991.23uncharacterized protein LOC101219142 [Cucumis sativus] >KGN48943.1 hypothetical ... [more]
XP_008440859.12.8e-1785.96PREDICTED: UPF0434 protein ECH_0194 [Cucumis melo] >KAA0025649.1 UPF0434 protein... [more]
XP_038883681.17.7e-1578.95UPF0434 protein Ecaj_0131 [Benincasa hispida][more]
XP_022132377.12.9e-1475.86uncharacterized protein LOC111005251 isoform X1 [Momordica charantia][more]
KAG6603894.12.5e-1371.21hypothetical protein SDJN03_04503, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT4G35905.14.5e-1357.89unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.25.10coord: 23..56
e-value: 1.5E-6
score: 29.7
NoneNo IPR availablePANTHERPTHR33505ZGC:162634coord: 1..54
NoneNo IPR availablePANTHERPTHR33505:SF4ZGC:162634coord: 1..54
NoneNo IPR availableSUPERFAMILY158997Trm112p-likecoord: 17..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G32040.1CSPI06G32040.1mRNA