CSPI06G31610 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G31610
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 26858695 .. 26859091 (+)
RNA-Seq ExpressionCSPI06G31610
SyntenyCSPI06G31610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCGGATCTCCTCATCTCCTCATCTCCAGACACCACACCCACAACCACTTCCACCACAGTCTCACCGCCATCGCCCACCGTCGCCTCCGCCTCTGTCTTTGTTTTCTTACCCAGGTATATAAATTCTTAATATTAATTCTGAGAGCATGGTGTGTACAGTTAATGATAGAAGTGGCAGAAAACAAAGACATGGGAGATGAATTTCAGAGTATTTAGGTTTAAATTAGGGTTTGGTATTTTCGAGGTTTCTGATTACAGTTTCTGCCTTCAAAATTCTCGACAACTAG

mRNA sequence

ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCGGATCTCCTCATCTCCTCATCTCCAGACACCACACCCACAACCACTTCCACCACAGTCTCACCGCCATCGCCCACCGTCGCCTCCGCCTCTGTCTTTGTTTTCTTACCCAGGTTTCTGATTACAGTTTCTGCCTTCAAAATTCTCGACAACTAG

Coding sequence (CDS)

ATGCGCAAGACACTGACCCTACACACTACCCTAAACCTCTCCTTTTATATTCTCTTTATTTCCCCATTTCCTCCCCTACACTACTCCTCCTTCAAATTACACAATCCCCCTCCGGATCTCCTCATCTCCTCATCTCCAGACACCACACCCACAACCACTTCCACCACAGTCTCACCGCCATCGCCCACCGTCGCCTCCGCCTCTGTCTTTGTTTTCTTACCCAGGTTTCTGATTACAGTTTCTGCCTTCAAAATTCTCGACAACTAG

Protein sequence

MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPPSPTVASASVFVFLPRFLITVSAFKILDN*
Homology
[Close]
BLAST of CSPI06G31610 vs. ExPASy TrEMBL
Match: A0A0A0KKM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505260 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP 60
          MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP
Sbjct: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP 60

Query: 61 SPTVASASVFVFLPRFLITVSAFKILDN 89
          SP+VASASVFVFLPRFLITVSAFKILDN
Sbjct: 61 SPSVASASVFVFLPRFLITVSAFKILDN 88

[Close]
BLAST of CSPI06G31610 vs. NCBI nr
Match: KGN48897.1 (hypothetical protein Csa_003089 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.6e-38
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP 60
          MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP
Sbjct: 1  MRKTLTLHTTLNLSFYILFISPFPPLHYSSFKLHNPPPDLLISSSPDTTPTTTSTTVSPP 60

Query: 61 SPTVASASVFVFLPRFLITVSAFKILDN 89
          SP+VASASVFVFLPRFLITVSAFKILDN
Sbjct: 61 SPSVASASVFVFLPRFLITVSAFKILDN 88

The following BLAST results are available for this feature:
BLAST of CSPI06G31610 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G31610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM13.2e-3898.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505260 PE=4 SV=1[more]
BLAST of CSPI06G31610 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48897.16.6e-3898.86hypothetical protein Csa_003089 [Cucumis sativus][more]
BLAST of CSPI06G31610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G31610.1CSPI06G31610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane