CSPI06G30540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G30540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 26245794 .. 26246783 (-)
RNA-Seq Expression	CSPI06G30540
Synteny	CSPI06G30540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATAGAAAAAGTAAAACCAAAATGCCCAAAAAACCAGACTAAGTCATCAAAGGTCACTTTTTTTTATTTCTTTTATACACTACACCGACTTGTCAGCCTTATCCACAATCATACCTCAATCTGAATATAAATTATGTCATCCTCCTGAAGGGGTCTCCTCAAAATCAACTAAGAGGGAGAGTTGAAAAATCACAGCCATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGAGTTGCTCTATTGGGTTTATATATATATATATTGTAAATGTTTCTCGTCTCTCGCTCTCTCTCTCTCTCAAATCTGTACATTTTTTTTTTTCTTTTTTCCTTTTTTGGATTCTATTAGTTTTGAAATGCTTTTGAATTCGAGAGAAGAAGGGTGAGATTGTATTACGATTTGATGATTATTATAGGGTTTGAATTAACCATATGAATGTTGGGAAAAGATGGATGATTTGGTTTTCAAGAAATCATCGAGAGTTGGCCACTTAGTTGGTGCTTTTAAATATGTGATATGGTGGATGGATGAGGCTGTTCAGATCCCATATTGAAAAATCAATGAATTTAGTTGTTCATAGTTATGATTTGGGATCAATCCACCATCTAAGATGGTATCAATAATAATTTGATATTTATATTTGATATTAAATCGTAGACATAATTTATATTTGATATTAAATTACCTTGTGAGCTTTTCAACTCGTAATTATAATTATGGTCATGATATCTCTTTATGTAATTGATATATAGT

mRNA sequence

CCATAGAAAAAGTAAAACCAAAATGCCCAAAAAACCAGACTAAGTCATCAAAGGTCACTTTTTTTTATTTCTTTTATACACTACACCGACTTGTCAGCCTTATCCACAATCATACCTCAATCTGAATATAAATTATGTCATCCTCCTGAAGGGGTCTCCTCAAAATCAACTAAGAGGGAGAGTTGAAAAATCACAGCCATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGAGTTGCTCTATTGGGTTTATATATATATATATTGTAAATGTTTCTCGTCTCTCGCTCTCTCTCTCTCTCAAATCTGTACATTTTTTTTTTTCTTTTTTCCTTTTTTGGATTCTATTAGTTTTGAAATGCTTTTGAATTCGAGAGAAGAAGGGTGAGATTGTATTACGATTTGATGATTATTATAGGGTTTGAATTAACCATATGAATGTTGGGAAAAGATGGATGATTTGGTTTTCAAGAAATCATCGAGAGTTGGCCACTTAGTTGGTGCTTTTAAATATGTGATATGGTGGATGGATGAGGCTGTTCAGATCCCATATTGAAAAATCAATGAATTTAGTTGTTCATAGTTATGATTTGGGATCAATCCACCATCTAAGATGGTATCAATAATAATTTGATATTTATATTTGATATTAAATCGTAGACATAATTTATATTTGATATTAAATTACCTTGTGAGCTTTTCAACTCGTAATTATAATTATGGTCATGATATCTCTTTATGTAATTGATATATAGT

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGATGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Protein sequence

MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA*

Homology

[Close]

BLAST of CSPI06G30540 vs. ExPASy TrEMBL
Match: A0A0A0KK75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CSPI06G30540 vs. ExPASy TrEMBL
Match: A0A5A7T3Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002530 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR K+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CSPI06G30540 vs. ExPASy TrEMBL
Match: A0A1S4DTC5 (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR K+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CSPI06G30540 vs. ExPASy TrEMBL
Match: A0A6J1KS29 (uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRMKNPR+ +E    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQ-EEKAAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            AE +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAERNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CSPI06G30540 vs. ExPASy TrEMBL
Match: A0A6J1HEA8 (uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC111463202 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRMKNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQK-AAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CSPI06G30540 vs. NCBI nr
Match: XP_011657992.1 (uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical protein Csa_003490 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CSPI06G30540 vs. NCBI nr
Match: XP_016899241.1 (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 uncharacterized protein E6C27_scaffold18G00700 [Cucumis melo var. makuwa] >TYK12665.1 uncharacterized protein E5676_scaffold255G002530 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 4.6e-31
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR K+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CSPI06G30540 vs. NCBI nr
Match: XP_038882836.1 (uncharacterized protein LOC120073972 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRMKNP + QE  +QELQ+L +SGVSISATATSIRMKKMMEMAK+  
Sbjct: 1  MADIAILVAEEYERRMKNPTQVQE--KQELQDL-ASGVSISATATSIRMKKMMEMAKQ-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
           ++++SEF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -NSQISEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CSPI06G30540 vs. NCBI nr
Match: KAG6604012.1 (hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034176.1 hypothetical protein SDJN02_03903, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRMKNPR+ QE   Q+L++L SSGVSISATA++IRMKKMME+A +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDL-SSGVSISATASAIRMKKMMEIAIQ-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
           +AEM+EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -NAEMTEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CSPI06G30540 vs. NCBI nr
Match: XP_023517526.1 (uncharacterized protein LOC111781261 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSI--RMKKMMEMAKK 60
          MADIAILVAEEYERRMKNPR+ Q+    ELQ+L  SGVSISATAT+   R+KKMME+  +
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQKG-AAELQDL-VSGVSISATATATASRVKKMMELELE 60

Query: 61 HNYSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
              A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 LEL-AQQNEFKWVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CSPI06G30540 vs. TAIR 10
Match: AT5G65207.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 36/89 (40.45%), Postives = 40/89 (44.94%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRMK+   G      E          I     +I   KM   + K N
Sbjct: 1  MADIAILVAEEYERRMKHTTVGSRSSPVEF-----DWWKIIPAKMTIAFDKMKIESLKKN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
                     FE KS+   A S GFFSA
Sbjct: 61 -----------FEAKSEFALAISHGFFSA 73

The following BLAST results are available for this feature:

BLAST of CSPI06G30540 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G30540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75	5.0e-39	98.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]
A0A5A7T3Y6	2.2e-31	87.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DTC5	2.2e-31	87.64	uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=...	[more]
A0A6J1KS29	1.7e-18	70.79	uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122...	[more]
A0A6J1HEA8	6.3e-18	69.66	uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]

BLAST of CSPI06G30540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657992.1	1.0e-38	98.88	uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical ...	[more]
XP_016899241.1	4.6e-31	87.64	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 unc...	[more]
XP_038882836.1	1.1e-24	79.78	uncharacterized protein LOC120073972 [Benincasa hispida]	[more]
KAG6604012.1	1.6e-23	77.53	hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517526.1	2.6e-18	70.33	uncharacterized protein LOC111781261 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G30540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65207.1	3.9e-04	40.45	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	EXPRESSED PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR36067:SF1	EXPRESSED PROTEIN	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G30540.1	CSPI06G30540.1	mRNA