CSPI06G29760 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G29760
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein SKIP34
Location	Chr6: 25741261 .. 25742244 (-)
RNA-Seq Expression	CSPI06G29760
Synteny	CSPI06G29760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACACTGAATTGAGCGTAACATCTACAATATGCTATACTAAACCGCCAAATTAAGAAATGTAGATTCCAACAAAAGTTTACCACCAAATCAAAATAACGTTTCTCCTAACGGCAGGGCTACGACGTCGTTTGGAGTTGGACCATACCCACCCAACCCAAGGATCCGTTTTGACCATAAGTTTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCAGCTCCAAGAATCCGATTTGTTTATCCAAATACCGATTCATCCCTCTTTCCGCCGATCGTCGATTTTCAGTTTCCGCCATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCTGTACCATCCAAAAACTCGTTTTGTTTACATGCCTCTTCGCTCTTCTCATTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCCCCCTAGATTTCACTTGTGAATGGAATCGTAGAATCGATACTGTTAGAATCGAGGGGGATTTTCAGTTTTTTGAATGAGAGCGACTTGCAAATCGCTTAAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTTCTGTAATCTAATTAGTCATATTGTAAGTATTTCTCAGATTAACATTGGTTTTAAAAGGTTTTTAGACGAAACTTATGTCAAATTCATCTTACTTGGGAATGAAATCGTGGAATTGATACC

mRNA sequence

GCGACACTGAATTGAGCGTAACATCTACAATATGCTATACTAAACCGCCAAATTAAGAAATGTAGATTCCAACAAAAGTTTACCACCAAATCAAAATAACGTTTCTCCTAACGGCAGGGCTACGACGTCGTTTGGAGTTGGACCATACCCACCCAACCCAAGGATCCGTTTTGACCATAAGTTTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCAGCTCCAAGAATCCGATTTGTTTATCCAAATACCGATTCATCCCTCTTTCCGCCGATCGTCGATTTTCAGTTTCCGCCATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAGAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCTGTACCATCCAAAAACTCGTTTTGTTTACATGCCTCTTCGCTCTTCTCATTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCCCCCTAGATTTCACTTGTGAATGGAATCGTAGAATCGATACTGTTAGAATCGAGGGGGATTTTCAGTTTTTTGAATGAGAGCGACTTGCAAATCGCTTAAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTTCTGTAATCTAATTAGTCATATTGTAAGTATTTCTCAGATTAACATTGGTTTTAAAAGGTTTTTAGACGAAACTTATGTCAAATTCATCTTACTTGGGAATGAAATCGTGGAATTGATACC

Coding sequence (CDS)

ATGTGTAACGGTCACCACCGACCTTTGTTCAGAGGTAGCCTTCCTCCCTACCAGACCTCCGTACCGGAAAACGGCGCCGTATCCGTTGTGGACAACCTACGGGGTCGATTAGAGGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGATTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAGCGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAG

Protein sequence

MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK*

Homology

[Close]

BLAST of CSPI06G29760 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-16
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.1e-43
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.1e-43
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.3e-36
Identity = 85/97 (87.63%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS+ P QTSVPENG  SVVDNLRGRL ETE RLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEIL+NYLKR+Y DRQEYVVRLL+P+SRK
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of CSPI06G29760 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 6.7e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. NCBI nr
Match: KAE8647547.1 (hypothetical protein Csa_002974 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 8.5e-39
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVV 88
          MKRLVSVMEILENYLKRQYSDRQEYV+
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVI 87

[Close]

BLAST of CSPI06G29760 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 85/97 (87.63%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGA-VSVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MCNGHHR LFRGS+ P QTSVPENG   SVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of CSPI06G29760 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.3e-35
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRG++ P QTSVPENG  SVVDNLRGRL ETE RLAQVRAREA LSRLLEE
Sbjct: 1  MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKRLV VMEILENYLKR+Y DRQEYVVRLL+PVSRK
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96

[Close]

BLAST of CSPI06G29760 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 97
          MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

The following BLAST results are available for this feature:

BLAST of CSPI06G29760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	3.6e-16	52.08	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of CSPI06G29760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR5	3.3e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A5D3CN14	6.1e-43	97.92	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	6.1e-43	97.92	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A6J1GF20	7.3e-36	87.63	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]
A0A6J1IV54	2.1e-35	84.38	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]

BLAST of CSPI06G29760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657944.1	6.7e-44	100.00	protein SKIP34 [Cucumis sativus]	[more]
XP_008440533.1	1.3e-42	97.92	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]
KAE8647547.1	8.5e-39	98.85	hypothetical protein Csa_002974 [Cucumis sativus]	[more]
XP_022950522.1	1.5e-35	87.63	protein SKIP34 [Cucurbita moschata]	[more]
XP_023544310.1	3.3e-35	85.42	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI06G29760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	2.6e-17	52.08	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G29760.1	CSPI06G29760.1	mRNA