CSPI06G29600 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G29600
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	MADS box transcription factor
Location	Chr6: 25654924 .. 25655428 (-)
RNA-Seq Expression	CSPI06G29600
Synteny	CSPI06G29600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGGTTTGTGATTTCTCTCTCTGAGAGCTCATTTTTAGATCAGAAATTGTGTTTGGCTTCTTAGTTAGTTGATAATCTTAGTTTTGTTTTTGGATTTAGAACTGAAAAGGGGAACGGTTATATACGATCAAATAAATTTAAAGCTATTTTTATTAGGAAGAAATTTCTAACTATACTATGAAATTATTTTCTTTGATTTTTGTTGGGGTGAGATTTTAGAGTTATATGATTTGTTTTTGGTGATCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAG

mRNA sequence

ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAG

Coding sequence (CDS)

ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAG

Protein sequence

MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVK

Homology

[Close]

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot
Match: Q9SZJ6 (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-30
Identity = 68/87 (78.16%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEVGLIIFSS+GK Y+FASS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM S+I++YN+ K E + LLNP S+VK
Sbjct: 61 SMKSVIDRYNKSKIEQQQLLNPASEVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot
Match: Q9SI38 (MADS-box transcription factor ANR1 OS=Arabidopsis thaliana OX=3702 GN=ANR1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-28
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS- 60
          MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAEVG+IIFSS+GK Y++AS 
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SSMHSIIEKYNRRKEEDELLLNPISDVK 88
          SSM +IIE+YNR KEE   LLN  S++K
Sbjct: 61 SSMKTIIERYNRVKEEQHQLLNHASEIK 88

[Close]

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot
Match: Q6EP49 (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-27
Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNS SRQVTFSKRR G+ KKAKEL+ILCDAEVGL+IFSS+G+ YE++S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM S+I++Y + K+E + + NP S++K
Sbjct: 61 SMKSVIDRYGKSKDEQQAVANPNSELK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot
Match: Q38840 (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-26
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEV LIIFS++ K Y+FASS
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          S+ S IE++N  K E++ L+NP S+VK
Sbjct: 61 SVKSTIERFNTAKMEEQELMNPASEVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot
Match: Q6VAM4 (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS23 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-25
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKI I+RIDN+ SRQVTFSKRR GL KKA+ELSILCDAEVGL++FSS+ + Y+FASS
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM SIIE+YN  KE+    +N  S+ K
Sbjct: 61 SMKSIIERYNETKEDPHQTMNASSEAK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL
Match: A0A1S3B0V7 (MADS-box transcription factor 23 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484916 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL
Match: A0A1S3B1B7 (MADS-box transcription factor 23 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484916 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL
Match: A0A1S3B214 (MADS-box transcription factor 23 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484916 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL
Match: A0A1S3B1W8 (MADS-box transcription factor 23 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484916 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL
Match: A0A6J1BUC2 (MADS-box transcription factor 23-like OS=Momordica charantia OX=3673 GN=LOC111005852 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.4e-35
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGL+KKAKEL+ILCDAE+GLIIFSSSGKHYEFAS+
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLLKKAKELAILCDAEIGLIIFSSSGKHYEFAST 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          S+ SIIEKYNRRKEEDELLLNP SD+K
Sbjct: 61 SIESIIEKYNRRKEEDELLLNPASDLK 87

[Close]

BLAST of CSPI06G29600 vs. NCBI nr
Match: XP_008440514.1 (PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. NCBI nr
Match: XP_008440515.1 (PREDICTED: MADS-box transcription factor 23 isoform X4 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. NCBI nr
Match: XP_031742506.1 (MADS-box transcription factor 23 isoform X1 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. NCBI nr
Match: XP_031742507.1 (MADS-box transcription factor 23 isoform X2 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. NCBI nr
Match: XP_008440512.1 (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 8.4e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS
Sbjct: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SMHSIIEKYNRRKEEDELLLNPISDVK
Sbjct: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 87

[Close]

BLAST of CSPI06G29600 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-31
Identity = 68/87 (78.16%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVI+RID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEVGLIIFSS+GK Y+FASS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM S+I++YN+ K E + LLNP S+VK
Sbjct: 61 SMKSVIDRYNKSKIEQQQLLNPASEVK 87

[Close]

BLAST of CSPI06G29600 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-29
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS- 60
          MGRGKIVIRRIDNS SRQVTFSKRR GL+KKAKELSILCDAEVG+IIFSS+GK Y++AS 
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query: 61 SSMHSIIEKYNRRKEEDELLLNPISDVK 88
          SSM +IIE+YNR KEE   LLN  S++K
Sbjct: 61 SSMKTIIERYNRVKEEQHQLLNHASEIK 88

[Close]

BLAST of CSPI06G29600 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-27
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKIVI++ID+S SRQVTFSKRRKGLIKKAKEL+ILCDAEV LIIFS++ K Y+FASS
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          S+ S IE++N  K E++ L+NP S+VK
Sbjct: 61 SVKSTIERFNTAKMEEQELMNPASEVK 87

[Close]

BLAST of CSPI06G29600 vs. TAIR 10
Match: AT3G57230.1 (AGAMOUS-like 16 )

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-25
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKI I+RI+NS SRQVTFSKRR GL+KKAKEL+ILCDAEVG+IIFSS+G+ Y+F+SS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM S+IE+Y+  K E     +P S+++
Sbjct: 61 SMKSVIERYSDAKGETSSENDPASEIQ 87

[Close]

BLAST of CSPI06G29600 vs. TAIR 10
Match: AT3G57230.2 (AGAMOUS-like 16 )

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-25
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASS 60
          MGRGKI I+RI+NS SRQVTFSKRR GL+KKAKEL+ILCDAEVG+IIFSS+G+ Y+F+SS
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61 SMHSIIEKYNRRKEEDELLLNPISDVK 88
          SM S+IE+Y+  K E     +P S+++
Sbjct: 61 SMKSVIERYSDAKGETSSENDPASEIQ 87

The following BLAST results are available for this feature:

BLAST of CSPI06G29600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZJ6	3.0e-30	78.16	Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=...	[more]
Q9SI38	1.7e-28	77.27	MADS-box transcription factor ANR1 OS=Arabidopsis thaliana OX=3702 GN=ANR1 PE=1 ...	[more]
Q6EP49	4.1e-27	67.82	MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38840	2.6e-26	71.26	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana OX=3702 GN=AGL17 PE=...	[more]
Q6VAM4	1.3e-25	67.82	MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of CSPI06G29600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0V7	4.1e-38	100.00	MADS-box transcription factor 23 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A1S3B1B7	4.1e-38	100.00	MADS-box transcription factor 23 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A1S3B214	4.1e-38	100.00	MADS-box transcription factor 23 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A1S3B1W8	4.1e-38	100.00	MADS-box transcription factor 23 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A6J1BUC2	9.4e-35	90.80	MADS-box transcription factor 23-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of CSPI06G29600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440514.1	8.4e-38	100.00	PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo]	[more]
XP_008440515.1	8.4e-38	100.00	PREDICTED: MADS-box transcription factor 23 isoform X4 [Cucumis melo]	[more]
XP_031742506.1	8.4e-38	100.00	MADS-box transcription factor 23 isoform X1 [Cucumis sativus]	[more]
XP_031742507.1	8.4e-38	100.00	MADS-box transcription factor 23 isoform X2 [Cucumis sativus]	[more]
XP_008440512.1	8.4e-38	100.00	PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo]	[more]

BLAST of CSPI06G29600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37940.1	2.1e-31	78.16	AGAMOUS-like 21	[more]
AT2G14210.1	1.2e-29	77.27	AGAMOUS-like 44	[more]
AT2G22630.1	1.9e-27	71.26	AGAMOUS-like 17	[more]
AT3G57230.1	1.8e-25	65.52	AGAMOUS-like 16	[more]
AT3G57230.2	1.8e-25	65.52	AGAMOUS-like 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 60.87 coord: 23..38 score: 71.33 coord: 38..59 score: 62.99
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 8.6E-38 score: 141.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 3.7E-25 score: 87.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 30.767738
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..82 e-value: 3.7E-29 score: 102.6
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..76
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..86
None	No IPR available	PANTHER	PTHR48019:SF82	SUBFAMILY NOT NAMED	coord: 1..86
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..77 e-value: 2.41506E-40 score: 125.743

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G29600.1	CSPI06G29600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding